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2026 Journal Article IL-33/IL1RL1 (ST2) signalling drives immune suppression in squamous intraepithelial hyperplasiaZhou, Chenhao, Gonzalez Cruz, Jazmina, Teoh, Siok Min, Tran, Minh, Goh, Denise, Narayanan, Divyaa, Tan, Xiao, Dang, Thi Viet Trinh, Tuong, Zewen Kelvin, Gillinder, Kevin, Bashaw, Abate, Wells, James W., Frazer, Ian H., Nguyen, Quan, Chen, Yu, Yu, Meihua and Chandra, Janin (2026). IL-33/IL1RL1 (ST2) signalling drives immune suppression in squamous intraepithelial hyperplasia. Tumour Virus Research, 22 200350, 200350. doi: 10.1016/j.tvr.2026.200350 |
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2026 Journal Article Recent advances in unlocking T cell signatures in cancer through deep learningYap, Norman Teik Wei, Wu, Kesong, Li, Linlin, Wang, Sen and Tuong, Zewen Kelvin (2026). Recent advances in unlocking T cell signatures in cancer through deep learning. Seminars in Cancer Biology, 126 102620, 1-9. doi: 10.1016/j.semcancer.2026.102620 |
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2026 Journal Article Intestinal infections establish antigen-specific, long-lived memory CD4+ T cells in the brain and meningesFleming, Aaron, Neish, Karen, Di Marco-Barros, Rafael, Posner, David A., Lee, Colin Y. C., Stewart, Andrew, Tuong, Zewen Kelvin, Bremridge, Miles, Peñalver, Ana, Cabantous, Mia, Richoz, Nathan, Portet, Anais, Harcourt, Katherine, Gillman, Eleanor, Sow, Tammie Tao Min, Hasegawa, Tetsuo, Ruano-Gallego, David, Frankel, Gad, Withers, David, Clare, Simon and Clatworthy, Menna R. (2026). Intestinal infections establish antigen-specific, long-lived memory CD4+ T cells in the brain and meninges. Nature Neuroscience. doi: 10.1038/s41593-026-02428-4 |
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2026 Journal Article Author Correction: Peyer’s patch M cells organize an epithelial niche that sustains group 3 innate lymphoid cells and IL-22Cao, Wang H. J., You, Yue, Wang, Nancy, Chaudhry, M. Zeeshan, Yu, Huiyang, Bell, Peter T., Noye, Ellesandra C., Denman, Renae, Lee, Byungchul, Waddington, Abbey, Ye, Junpeng, Schreuder, Jaring, Huang, Qiutong, Tellier, Julie, Curio, Sophie, Santiago, James, Amann-Zalcenstein, Daniela, Jacquelot, Nicolas, Hickey, Peter, Nutt, Stephen L., Seillet, Cyril, Hansbro, Philip M., Wimmer, Verena C., Strugnell, Richard A., Tuong, Zewen Kelvin, Ritchie, Matthew E. and Belz, Gabrielle T. (2026). Author Correction: Peyer’s patch M cells organize an epithelial niche that sustains group 3 innate lymphoid cells and IL-22. Nature Immunology, 27 (10), 2173-2173. doi: 10.1038/s41590-026-02669-2 |
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2026 Journal Article Peyer’s patch M cells organize an epithelial niche that sustains group 3 innate lymphoid cells and IL-22Cao, Wang H. J., You, Yue, Wang, Nancy, Chaudhry, M. Zeeshan, Yu, Huiyang, Bell, Peter T., Noye, Ellesandra C., Denman, Renae, Lee, Byungchul, Waddington, Abbey, Ye, Junpeng, Schreuder, Jaring, Huang, Qiutong, Tellier, Julie, Curio, Sophie, Santiago, James, Amann-Zalcenstein, Daniela, Jacquelot, Nicolas, Hickey, Peter, Nutt, Stephen L., Seillet, Cyril, Hansbro, Philip M., Wimmer, Verena C., Strugnell, Richard A., Tuong, Zewen Kelvin, Richie, Matthew E. and Belz, Gabrielle T. (2026). Peyer’s patch M cells organize an epithelial niche that sustains group 3 innate lymphoid cells and IL-22. Nature Immunology, 27 (9), 1829-1841. doi: 10.1038/s41590-026-02606-3 |
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2026 Journal Article Ancestry matters in decoding immunityWu, Kesong, Oliver, Amanda J. and Tuong, Zewen Kelvin (2026). Ancestry matters in decoding immunity. Immunology & Cell Biology, 104 (7), 708-710. doi: 10.1111/imcb.70143 |
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2026 Journal Article A temporal map of B cell diversification mechanisms in miceSkinner, Oliver P., Asad, Saba, Moreira, Marcela L., Lee, Hyun Jae, Williams, Cameron G., Ruan, Zheng, Lim, Jorene, Kerr, Ashlyn S., Li, Shihan, Zhu, Chen, Jin, Wang, Steiner, Thiago M., Asatsuma, Takahiro, Wanrooy, Brooke J., Liu, Zihan, Tong, Marcus Z. W., Soon, Megan S. F., Engel, Jessica A., Shobhana, Kalyan, Uldrich, Adam P., Khoury, David S., Tuong, Zewen Kelvin, King, Hamish W. and Haque, Ashraful (2026). A temporal map of B cell diversification mechanisms in mice. Nature Immunology, 27 (7), 1502-1516. doi: 10.1038/s41590-026-02563-x |
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2026 Journal Article Coupling dead cell recognition to Fcγ receptors augments anticancer immunityCastro-Dopico, Tomás, Piot, Cécile, Buck, Michael D., Gandullo-Sánchez, Lucía, Lim, Kok Haw Jonathan, Gonzales, Gerone A., Rosendahl, Nikita, Schulz, Oliver, Stainier, William, Vash, Brian, Maiocco, Stephanie, Henry, Conor M., Frederico, Bruno, Lee, Sonia, Zhang, Andy Bo, Rogers, Neil C., Bordoloi, Jayanta, Roustan, Chloë, Kjaer, Svend, Trikha, Mohit, Stauss, Hans, Hazini, Ahmet, Radford, Kristen J., Tuong, Zewen Kelvin, Canton, Johnathan, Mehta, Raj and Reis e Sousa, Caetano (2026). Coupling dead cell recognition to Fcγ receptors augments anticancer immunity. Nature Cancer. doi: 10.1038/s43018-026-01168-5 |
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2026 Journal Article The GFI1-FOXO1 axis regulates NK cell maturation and functionHuang, Qiutong, Chaudhry, M. Zeeshan, Dight, James, Alim, Louisa, Yu, Huiyang, Denman, Renae, Man, Hiu On, Schreuder, Jaring, Garnham, Alexandra L., Tuong, Zewen K., Souza-Fonseca-Guimaraes, Fernando, Jacquelot, Nicolas and Belz, Gabrielle T. (2026). The GFI1-FOXO1 axis regulates NK cell maturation and function. Nature Communications, 17 (1) 5593, 1. doi: 10.1038/s41467-026-72022-6 |
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2026 Journal Article Feature-preserving manifold approximation and projection to analyze single-cell dataYang, Yang, Gong, Jialei, Sun, Hongjian, Choo, Amos, Mar, Jessica Cara, Wei, Yunbo, Zhang, Yu, Zhang, Wenjie, Shu, Minglei, Tuong, Zewen Kelvin and Yu, Di (2026). Feature-preserving manifold approximation and projection to analyze single-cell data. Nature Computational Science, 6 (5), 478-496. doi: 10.1038/s43588-026-00970-6 |
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2026 Journal Article Subclinical fields of BRAF V600E-mutant melanocytes populate human skin and are enriched around melanoma and naeviLee, Katie J., Kao, Yung-Ching, Jiang, Amanda, Prokofyeva, Anastasia, Tom, Lisa N., Jagirdar, Kasturee, Smit, Darren J., Oey, Harald M., Tan, Jean-Marie, Ainger, Stephen A., Huang, Nancy, Tuong, Zewen Kelvin, Andersen, Stacey, Senabouth, Anne, Powell, Joseph E., Lambie, Duncan, Schaider, Helmut, Soyer, H. Peter, Sturm, Richard A., Welm, Alana L., Grossman, Douglas, Judson-Torres, Robert L. and Stark, Mitchell S. (2026). Subclinical fields of BRAF V600E-mutant melanocytes populate human skin and are enriched around melanoma and naevi. British Journal of Dermatology, 194 (2), 301-310. doi: 10.1093/bjd/ljaf412 |
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2025 Conference Publication Single-cell atlases of myeloid antigen-presenting cells converge in human cancerRosendahl, Nikita, Xu, Xiaohan, Yap, Norman Teik-Wei, Tuong, Zewen Kelvin and Radford, Kristen J (2025). Single-cell atlases of myeloid antigen-presenting cells converge in human cancer. SITC 40th Annual Meeting (SITC 2025), National Harbor, MD United States, 5-9 November 2025. London, United Kingdom: BMJ Group. doi: 10.1136/jitc-2025-sitc2025.0768 |
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2025 Journal Article Cell-cell interactions as predictive and prognostic markers for drug responses in cancerLu, Xuehan, Tan, Xiao, Kim, Eun Ju, Jin, Xinnan, Donovan, Meg L, Gonzalez Cruz, Jazmina L., Xiong, Zherui, de Los Reyes Becerra Perez, Maria Reyes Becerra, Gong, Jialei, Monkman, James, Agrawal, Divya, Kulasinghe, Arutha, U. Q. CellOmics Innovation Forum, Nguyen, Quan and Tuong, Zewen Kelvin (2025). Cell-cell interactions as predictive and prognostic markers for drug responses in cancer. Genome Medicine, 17 (1) 117, 1-20. doi: 10.1186/s13073-025-01518-5 |
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2025 Conference Publication Enrichment of putative bacteria-reactive gut-derived IL-17+tissue resident memory helper T cells in arthritic ankles in the SKG mouse model of spondyloarthritisCai, Benjamin, Soon, Megan, Tuong, Zewen Kelvin, Morrison, Mark, Bergot, Anne-Sophie and Thomas, Ranjeny (2025). Enrichment of putative bacteria-reactive gut-derived IL-17+tissue resident memory helper T cells in arthritic ankles in the SKG mouse model of spondyloarthritis. ACR Convergence 2025, Chicago, IL, United States, 24 – 29 October 2025. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1002/art.43421 |
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2025 Journal Article In vivo labelling resolves distinct temporal, spatial, and functional properties of tumour macrophages, and identifies subset-specific effects of PD-L1 blockadeLee, Colin Y. C., Dean, Isaac, Richoz, Nathan, Li, Zhi, Kennedy, Bethany C., Vettore, Lisa A., Samarakoon, Youhani, Gilroy, Kathryn L., Hasegawa, Tetsuo, Carlesso, Gianluca, Hammond, Scott A., Dovedi, Simon J., Sansom, Owen J., Tuong, Zewen K., Halim, Timotheus YF., Withers, David R. and Clatworthy, Menna R. (2025). In vivo labelling resolves distinct temporal, spatial, and functional properties of tumour macrophages, and identifies subset-specific effects of PD-L1 blockade. Cancer Immunology Research, 13 (9), 1453-1470. doi: 10.1158/2326-6066.cir-24-1233 |
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2025 Other Outputs Integrating 12 spatial and single cell technologies to characterise tumour neighbourhoods and cellular interactions in three skin cancer typesPrakrithi, P., Grice, Laura F., Zhang, Feng, Hockey, Levi, Tan, Samuel X., Tan, Xiao, Xiong, Zherui, Mulay, Onkar, Causer, Andrew, Newman, Andrew, Pham, Duy, Ni, Guiyan, Tuong, Kelvin, Jin, Xinnan, Kim, Eunju, Tran, Minh, Vu, Hani, Muller, Nicholas M., Killingbeck, Emily E., Gregory, Mark T., Teoh, Siok Min, Vo, Tuan, Zhang, Min, Landi, Maria Teresa, Brown, Kevin M., Iles, Mark M., Reitz, Zachary, Devitt, Katharina, Pan, Liuliu ... Nguyen, Quan (2025). Integrating 12 spatial and single cell technologies to characterise tumour neighbourhoods and cellular interactions in three skin cancer types. doi: 10.1101/2025.07.25.666708 |
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2025 Journal Article scRepertoire 2: Enhanced and efficient toolkit for single-cell immune profilingYang, Qile, Safina, Ksenia R., Nguyen, Kieu Diem Quynh, Tuong, Zewen Kelvin and Borcherding, Nicholas (2025). scRepertoire 2: Enhanced and efficient toolkit for single-cell immune profiling. PLOS Computational Biology, 21 (6) e1012760, 1-10. doi: 10.1371/journal.pcbi.1012760 |
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2025 Journal Article Temporal multi-omics analysis of COVID-19 in end-stage kidney diseaseStephenson, Emily, Macdonald-Dunlop, Erin, Dratva, Lisa M., Lindeboom, Rik G.H., Tuong, Zewen Kelvin, Tun, Win Min, Kretschmer, Lorenz, Buang, Norzawani B., Ballereau, Stephane, Cabantaus, Mia, Peñalver, Ana, Prigmore, Elena, Ferdinand, John R., Stewart, Benjamin J., Gisby, Jack, Malik, Talat H., Clarke, Candice L., Medjeral-Thomas, Nicholas, Prendecki, Maria, McAdoo, Stephen, Portet, Anais, Willicombe, Michelle, Sandhu, Eleanor, Pickering, Matthew C., Botto, Marina, Teichmann, Sarah A., Haniffa, Muzlifah, Clatworthy, Menna R., Thomas, David C. and Peters, James E. (2025). Temporal multi-omics analysis of COVID-19 in end-stage kidney disease. Cell Genomics, 5 (8) 100918, 100918. doi: 10.1016/j.xgen.2025.100918 |
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2025 Journal Article Low-dose interleukin-2 induces clonal expansion of BACH2-repressed effector regulatory T cells following acute coronary syndromeCase, A. G., O’Brien, J. W., Lu, Y., Charlier, F. T. W., Zhao, X., Weng, Y., Masters, L., Tuong, Z. K., Sriranjan, R., Cheriyan, J., Kemper, C., Clatworthy, M. R., Mallat, Z. and Zhao, T. X. (2025). Low-dose interleukin-2 induces clonal expansion of BACH2-repressed effector regulatory T cells following acute coronary syndrome. Nature Cardiovascular Research, 4 (6) 40, 727-739. doi: 10.1038/s44161-025-00652-y |
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2025 Journal Article GFI1-driven transcriptional and epigenetic programs maintain CD8+ T cell stemness and persistenceChaudhry, M. Zeeshan, Chen, Evelyn, Man, Hiu On, Jones, Aneesha, Denman, Renae, Yu, Huiyang, Huang, Qiutong, Ilich, Adrian, Schreuder, Jaring, Navarro, Severine, Tuong, Zewen K. and Belz, Gabrielle T. (2025). GFI1-driven transcriptional and epigenetic programs maintain CD8+ T cell stemness and persistence. Nature Immunology, 26 (6) 1418, 894-907. doi: 10.1038/s41590-025-02151-5 |
