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2024 Conference Publication Early Human Lung Immune Cell Development and Its Role in Epithelial Cell FateNikolic, M., Barnes, J. L., Yoshida, M., He, P., Worlock, K. B., Lindeboom, R. G. H., Suo, C., Pett, J. P., Wilbrey-Clark, A., Dann, E., Mamanova, L., Richardson, L., Polanski, K., Pennycuick, A., Allen-Hyttinen, J., Herczeg, I., Arzili, R., Hynds, R. E., Teixeira, V. H., Haniffa, M., Lim, K., Sun, D., Rawlins, E. L., Oliver, A., Lyons, P. A., Marioni, J. C., Ruhrberg, C., Tuong, Z. K., Clatworthy, M. R. ... Meyer, K. B. (2024). Early Human Lung Immune Cell Development and Its Role in Epithelial Cell Fate. International Conference of the American-Thoracic-Society (ATS), San Diego Ca, May 17-22, 2024. NEW YORK: AMER THORACIC SOC. |
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2024 Conference Publication Early Human Lung Immune Cell Development and Its Role in Epithelial Cell FateNikolic, M., Barnes, J.L., Yoshida, M., He, P., Worlock, K.B., Lindeboom, R.G.H., Suo, C., Pett, J.P., Wilbrey-Clark, A., Dann, E., Mamanova, L., Richardson, L., Polanski, K., Pennycuick, A., Allen-Hyttinen, J., Herczeg, I., Arzili, R., Hynds, R.E., Teixeira, V.H., Haniffa, M., Lim, K., Sun, D., Rawlins, E.L., Oliver, A., Lyons, P.A., Marioni, J.C., Ruhrberg, C., Tuong, Z.K., Clatworthy, M.R. ... Meyer, K.B. (2024). Early Human Lung Immune Cell Development and Its Role in Epithelial Cell Fate. American Thoracic Society 2024 International Conference, San Diego, CA United States, 17-22 May 2024. New York, NY United States: American Thoracic Society. doi: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a7456 |
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2024 Journal Article Single-cell immune repertoire analysisIrac, Sergio E., Soon, Megan Sioe Fei, Borcherding, Nicholas and Tuong, Zewen Kelvin (2024). Single-cell immune repertoire analysis. Nature Methods, 21 (5), 777-792. doi: 10.1038/s41592-024-02243-4 |
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2024 Journal Article Venous-plexus-associated lymphoid hubs support meningeal humoral immunityFitzpatrick, Zachary, Ghabdan Zanluqui, Nagela, Rosenblum, Jared S., Tuong, Zewen Kelvin, Lee, Colin Y. C., Chandrashekhar, Vikram, Negro-Demontel, Maria Luciana, Stewart, Andrew P., Posner, David A., Buckley, Monica, Allinson, Kieren S. J., Mastorakos, Panagiotis, Chittiboina, Prashant, Maric, Dragan, Donahue, Danielle, Helmy, Adel, Tajsic, Tamara, Ferdinand, John R., Portet, Anais, Peñalver, Ana, Gillman, Eleanor, Zhuang, Zhengping, Clatworthy, Menna R. and McGavern, Dorian B. (2024). Venous-plexus-associated lymphoid hubs support meningeal humoral immunity. Nature, 628 (8008) s41586-024-07202-9, 612-619. doi: 10.1038/s41586-024-07202-9 |
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2024 Journal Article Rapid functional impairment of natural killer cells following tumor entry limits anti-tumor immunityDean, Isaac, Lee, Colin Y. C., Tuong, Zewen K., Li, Zhi, Tibbitt, Christopher A., Willis, Claire, Gaspal, Fabrina, Kennedy, Bethany C., Matei-Rascu, Veronika, Fiancette, Rémi, Nordenvall, Caroline, Lindforss, Ulrik, Baker, Syed Murtuza, Stockmann, Christian, Sexl, Veronika, Hammond, Scott A., Dovedi, Simon J., Mjösberg, Jenny, Hepworth, Matthew R., Carlesso, Gianluca, Clatworthy, Menna R. and Withers, David R. (2024). Rapid functional impairment of natural killer cells following tumor entry limits anti-tumor immunity. Nature Communications, 15 (1) 683, 1-18. doi: 10.1038/s41467-024-44789-z |
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2024 Journal Article Tumour-retained activated CCR7+ dendritic cells are heterogeneous and regulate local anti-tumour cytolytic activityLee, Colin Y. C., Kennedy, Bethany C., Richoz, Nathan, Dean, Isaac, Tuong, Zewen K., Gaspal, Fabrina, Li, Zhi, Willis, Claire, Hasegawa, Tetsuo, Whiteside, Sarah K., Posner, David A., Carlesso, Gianluca, Hammond, Scott A., Dovedi, Simon J., Roychoudhuri, Rahul, Withers, David R. and Clatworthy, Menna R. (2024). Tumour-retained activated CCR7+ dendritic cells are heterogeneous and regulate local anti-tumour cytolytic activity. Nature Communications, 15 (1) 682, 1-18. doi: 10.1038/s41467-024-44787-1 |
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2023 Journal Article Early human lung immune cell development and its role in epithelial cell fateBarnes, Josephine L., Yoshida, Masahiro, He, Peng, Worlock, Kaylee B., Lindeboom, Rik G. H., Suo, Chenqu, Pett, J. Patrick, Wilbrey-Clark, Anna, Dann, Emma, Mamanova, Lira, Richardson, Laura, Polanski, Krzysztof, Pennycuick, Adam, Allen-Hyttinen, Jessica, Herczeg, Iván T., Arzili, Romina, Hynds, Robert E., Teixeira, Vitor H., Haniffa, Muzlifah, Lim, Kyungtae, Sun, Dawei, Rawlins, Emma L., Oliver, Amanda J., Lyons, Paul A., Marioni, John C., Ruhrberg, Christiana, Tuong, Zewen Kelvin, Clatworthy, Menna R., Reading, James L. ... Nikolić, Marko Z. (2023). Early human lung immune cell development and its role in epithelial cell fate. Science Immunology, 8 (90) eadf9988, 1-18. doi: 10.1126/sciimmunol.adf9988 |
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2023 Journal Article Tissue-resident B cells orchestrate macrophage polarisation and functionSuchanek, Ondrej, Ferdinand, John R., Tuong, Zewen K., Wijeyesinghe, Sathi, Chandra, Anita, Clauder, Ann-Katrin, Almeida, Larissa N., Clare, Simon, Harcourt, Katherine, Ward, Christopher J., Bashford-Rogers, Rachael, Lawley, Trevor, Manz, Rudolf A., Okkenhaug, Klaus, Masopust, David and Clatworthy, Menna R. (2023). Tissue-resident B cells orchestrate macrophage polarisation and function. Nature Communications, 14 (1) 7081, 1-20. doi: 10.1038/s41467-023-42625-4 |
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2023 Journal Article Autoimmune uveitis in Behçet's disease and Vogt‐Koyanagi‐Harada disease differ in tissue immune infiltration and T cell clonalityKang, Hao, Sun, Hongjian, Yang, Yang, Tuong, Zewen K., Shu, Minglei, Wei, Yunbo, Zhang, Yu, Yu, Di and Tao, Yong (2023). Autoimmune uveitis in Behçet's disease and Vogt‐Koyanagi‐Harada disease differ in tissue immune infiltration and T cell clonality. Clinical and Translational Immunology, 12 (9) e1461, 1-17. doi: 10.1002/cti2.1461 |
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2023 Journal Article Atypical B cells and impaired SARS-CoV-2 neutralization following heterologous vaccination in the elderlyFerreira, Isabella A.T.M., Lee, Colin Y.C., Foster, William S., Abdullahi, Adam, Dratva, Lisa M., Tuong, Zewen Kelvin, Stewart, Benjamin J., Ferdinand, John R., Guillaume, Stephane M., Potts, Martin O.P., Perera, Marianne, Krishna, Benjamin A., Peñalver, Ana, Cabantous, Mia, Kemp, Steven A., Ceron-Gutierrez, Lourdes, Ebrahimi, Soraya, Lyons, Paul, Smith, Kenneth G.C., Bradley, John, Collier, Dami A., McCoy, Laura E., van der Klaauw, Agatha, Thaventhiran, James E.D., Farooqi, I. Sadaf, Teichmann, Sarah A., MacAry, Paul A., Doffinger, Rainer, Wills, Mark R. ... Gupta, Ravindra K. (2023). Atypical B cells and impaired SARS-CoV-2 neutralization following heterologous vaccination in the elderly. Cell Reports, 42 (8) 112991, 112991. doi: 10.1016/j.celrep.2023.112991 |
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2023 Journal Article A novel multifunctional radioprotective strategy using P7C3 as a countermeasure against ionizing radiation-induced bone lossWei, Fei, Tuong, Zewen Kelvin, Omer, Mahmoud, Ngo, Christopher, Asiatico, Jackson, Kinzel, Michael, Pugazhendhi, Abinaya Sindu, Khaled, Annette R., Ghosh, Ranajay and Coathup, Melanie (2023). A novel multifunctional radioprotective strategy using P7C3 as a countermeasure against ionizing radiation-induced bone loss. Bone Research, 11 (1) 34, 1-20. doi: 10.1038/s41413-023-00273-w |
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2023 Journal Article Distinct pathogenic roles for resident and monocyte-derived macrophages in lupus nephritis (vol 7, e159751, 2022)Richoz, Nathan, Tuong, Zewen K., Loudon, Kevin W., Patino-Martinez, Eduardo, Ferdinand, John R., Portet, Anais, Romo-Tena, Jorge, Bashant, Kathleen R., Thevenon, Emeline, Rucci, Francesca, Hoyler, Thomas, Junt, Tobias, Kaplan, Mariana J., Siegel, Richard M. and Clatworthy, Menna R. (2023). Distinct pathogenic roles for resident and monocyte-derived macrophages in lupus nephritis (vol 7, e159751, 2022). Jci Insight, 8 (10) e171762. doi: 10.1172/jci.insight.171762 |
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2023 Conference Publication Venous plexus-associated lymphoid hubs support meningeal humoral immunityZanluqui, Nagela Ghabdan, Fitzpatrick, Zachary, Rosenblum, Jared S., Tuong, Zewen Kelvin, Chandrashekhar, Vikram, Negro-Demontel, Maria Luciana, Allinson, Kieren S. J., Mastorakos, Panagiotis, Chittiboina, Prashant, Maric, Dragan, Donahue, Danielle, Ferdinand, John R., Portet, Anais, Penalver, Ana, Gillman, Eleanor, Zhuang, Zhengping, Clatworthy, Menna R. and McGavern, Dorian B. (2023). Venous plexus-associated lymphoid hubs support meningeal humoral immunity. Immunology 2023™ Meeting, Washington, DC United States, 11-15 May 2023. Rockville, MD United States: American Association of Immunologists. doi: 10.4049/jimmunol.210.supp.76.23 |
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2023 Journal Article Dandelion uses the single-cell adaptive immune receptor repertoire to explore lymphocyte developmental originsSuo, Chenqu, Polanski, Krzysztof, Dann, Emma, Lindeboom, Rik G. H., Vilarrasa-Blasi, Roser, Vento-Tormo, Roser, Haniffa, Muzlifah, Meyer, Kerstin B., Dratva, Lisa M., Tuong, Zewen Kelvin, Clatworthy, Menna R. and Teichmann, Sarah A. (2023). Dandelion uses the single-cell adaptive immune receptor repertoire to explore lymphocyte developmental origins. Nature Biotechnology, 42 (1), 40-51. doi: 10.1038/s41587-023-01734-7 |
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2023 Journal Article Low-dose IL-2 enhances the generation of IL-10-producing immunoregulatory B cellsInaba, Akimichi, Tuong, Zewen Kelvin, Zhao, Tian X., Stewart, Andrew P., Mathews, Rebeccah, Truman, Lucy, Sriranjan, Rouchelle, Kennet, Jane, Saeb-Parsy, Kourosh, Wicker, Linda, Waldron-Lynch, Frank, Cheriyan, Joseph, Todd, John A., Mallat, Ziad and Clatworthy, Menna R. (2023). Low-dose IL-2 enhances the generation of IL-10-producing immunoregulatory B cells. Nature Communications, 14 (1) 2071, 1-11. doi: 10.1038/s41467-023-37424-w |
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2023 Journal Article Heparan sulfate regulates IL-21 bioavailability and signal strength that control germinal center B cell selection and differentiationChen, Zhian, Cui, Yanfang, Yao, Yin, Liu, Bo, Yunis, Joseph, Gao, Xin, Wang, Naiqi, Cañete, Pablo F., Tuong, Zewen Kelvin, Sun, Hongjian, Wang, Hao, Yang, Siling, Wang, Runli, Leong, Yew Ann, Simon Davis, David, Qin, Jiahuan, Liang, Kaili, Deng, Jun, Wang, Conan K., Huang, Yen-Hua, Roco, Jonathan A., Nettelfield, Sam, Zhu, Huaming, Xu, Huajun, Yu, Zhijia, Craik, David, Liu, Zheng, Qi, Hai, Parish, Christopher and Yu, Di (2023). Heparan sulfate regulates IL-21 bioavailability and signal strength that control germinal center B cell selection and differentiation. Science immunology, 8 (80) eadd1728, 1-17. doi: 10.1126/sciimmunol.add1728 |
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2023 Journal Article Dimensionality reduction under scrutinyYang, Yang, Tuong, Zewen K. and Yu, Di (2023). Dimensionality reduction under scrutiny. Nature Computational Science, 3 (1), 8-9. doi: 10.1038/s43588-022-00383-1 |
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2022 Journal Article A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fatesHe, Peng, Lim, Kyungtae, Sun, Dawei, Pett, Jan Patrick, Jeng, Quitz, Polanski, Krzysztof, Dong, Ziqi, Bolt, Liam, Richardson, Laura, Mamanova, Lira, Dabrowska, Monika, Wilbrey-Clark, Anna, Madissoon, Elo, Tuong, Zewen Kelvin, Dann, Emma, Suo, Chenqu, Goh, Isaac, Yoshida, Masahiro, Nikolić, Marko Z., Janes, Sam M., He, Xiaoling, Barker, Roger A., Teichmann, Sarah A., Marioni, John C., Meyer, Kerstin B. and Rawlins, Emma L. (2022). A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates. Cell, 185 (25), 4841-4860.e25. doi: 10.1016/j.cell.2022.11.005 |
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2022 Journal Article Distinct pathogenic roles for resident and monocyte-derived macrophages in lupus nephritisRichoz, Nathan, Tuong, Zewen K., Loudon, Kevin W., Patiño-Martínez, Eduardo, Ferdinand, John R., Portet, Anaïs, Bashant, Kathleen R., Thevenon, Emeline, Rucci, Francesca, Hoyler, Thomas, Junt, Tobias, Kaplan, Mariana J., Siegel, Richard M. and Clatworthy, Menna R. (2022). Distinct pathogenic roles for resident and monocyte-derived macrophages in lupus nephritis. JCI Insight, 7 (21) e159751, 1-19. doi: 10.1172/jci.insight.159751 |
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2022 Journal Article Obesity is associated with attenuated tissue immunity in COVID-19Guo, Shuang A., Bowyer, Georgina S., Ferdinand, John R., Maes, Mailis, Tuong, Zewen K., Gillman, Eleanor, Liao, Mingfeng, Lindeboom, Rik G H, Yoshida, Masahiro, Worlock, Kaylee, Gopee, Hudaa, Stephenson, Emily, Gao, Catherine A, Lyons, Paul A, Smith, Kenneth G C, Haniffa, Muzlifah, Meyer, Kerstin B, Nikolić, Marko Z, Zhang, Zheng, Wunderink, Richard G, Misharin, Alexander V, Dougan, Gordon, Navapurkar, Vilas, Teichmann, Sarah A, Conway Morris, Andrew and Clatworthy, Menna R (2022). Obesity is associated with attenuated tissue immunity in COVID-19. American Journal of Respiratory and Critical Care Medicine, 207 (5), 566-576. doi: 10.1164/rccm.202204-0751OC |
