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Dr Kelvin Tuong
Dr

Kelvin Tuong

Email: 
Phone: 
+61 7 3069 7506

Overview

Background

Dr. Kelvin Tuong is a Senior Research Fellow/Group Leader at the Ian Frazer Centre for Children’s Immunotherapy Research (IFCCIR), Child Health Research Centre. He is interested in single-cell analysis of immune cells and harnessing adaptive immune receptors for understanding immune cell development and function in health and in cancer.

Dr. Tuong was born and raised in Singapore and moved to Brisbane, Australia, after completing national service in Singapore and obtaining a Diploma in Biomedical Laboratory Technology (Ngee Ann Polytechnic).

Dr. Tuong was originally trained as a molecular cell biologist and gradually transitioned into bioinformatics during his post-doctoral training. He has been very prolific for an early career researcher, having published >50 articles since 2013, with nearly a third of them as first/co-first or last author and has a stellar track record of pushing out highly collaborative work in prestigious journals including Nature, Cell, Science, Nature Medicine, Nature Biotechnology J Exp Med etc. He has the rare combination of having excellent laboratory and bioinformatics skill sets which provide him a strong command of both fundamental immunology and computational approaches.

Dr. Tuong completed his undergraduate Bachelor's degree in Biomedical science with Class I Honours, followed by his PhD in macrophage cell biology and endocrinology at UQ (Prof. Jenny Stow lab and Emiritus Prof. George Muscat lab, IMB, UQ). He then went on to a post-doc position with Emiritus Prof. Ian Frazer (co-inventor of the Gardasil cervical cancer vaccine, UQ Frazer Institute, Translational Research Institute) where he worked on HPV immunology, cervical cancer and skin cancer. In his time in the Frazer lab, he developed an interest in bioinformatics analyses as a means to tackle and understanding immunology problems in health and disease. He then moved to the UK and joined Prof. Menna Clatworthy's lab at the University of Cambridge and Dr. Sarah Teichmann's lab at the Wellcome Trust Sanger Institute. He has focused his interests on single-cell analyses of tissue immune cells, including T and B cells and their specific receptors (TCR/BCR). He has developed bespoke bioinformatics software, including one tailored for single-cell B Cell Receptor sequencing analysis, Dandelion, which he used in one of the largest combined single-cell transcriptomic, surface proteomic and TCR/BCR sequencing dataset in the world, published in Nature Medicine, and more recently in Nature Biotechnology where we introduced a TCR-based pseudotime trajectory analysis method.

Dr. Tuong is now leading the Computational Immunology group at the IFCCIR and his lab is focused on investigating how pediatric immunity is perturbed during cancer at the cellular level and how this information can be used for creating novel warning systems for children with cancer. For potential students/post-docs/trainees interested in joining the team, please contact Dr. Tuong at z.tuong@uq.edu.au.

Availability

Dr Kelvin Tuong is:
Available for supervision

Qualifications

  • Doctor of Philosophy, The University of Queensland

Research interests

  • Single-cell analysis of immune repertoires

    Specialized immune cells known as T-cells and B-cells use specific receptors to recognize tumor antigens and fight cancerous cells. My vision is to harness these cells and their receptors to enable early cancer detection and disease monitoring. These specific adaptive immune receptors are essential for all aspects of the T- and B-cell’s life cycle, serving as natural ‘time-keepers’ of the immune response against cancer progression. My research team will explore the properties that define how effective these immune cells are in childhood cancer by performing high resolution gene expression profiling at the single-cell level. To achieve this, we will develop critical software and algorithms for analyzing these immune cells and their receptors. We will develop highly advanced computer models that can be used to detect adaptive immune receptors that are targeted towards cancer. These models will learn and identify cancer-specific patterns and we will apply it onto predicting and monitoring response to therapy in children with blood cancer. This will allow for a highly precise mechanism that could be deployed early for initial cancer detection and monitoring of childhood cancer progression.

Works

Search Professor Kelvin Tuong’s works on UQ eSpace

89 works between 2013 and 2025

41 - 60 of 89 works

2022

Journal Article

In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue

Li, Zhi, Tuong, Zewen K., Dean, Isaac, Willis, Claire, Gaspal, Fabrina, Fiancette, Rémi, Idris, Suaad, Kennedy, Bethany, Ferdinand, John R., Peñalver, Ana, Cabantous, Mia, Murtuza Baker, Syed, Fry, Jeremy W., Carlesso, Gianluca, Hammond, Scott A., Dovedi, Simon J., Hepworth, Matthew R., Clatworthy, Menna R. and Withers, David R. (2022). In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue. Journal of Experimental Medicine, 219 (6) e20210749, 1-27. doi: 10.1084/jem.20210749

In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue

2022

Journal Article

The impact of hypoxia on B cells in COVID-19

Kotagiri, Prasanti, Mescia, Federica, Hanson, Aimee L., Turner, Lorinda, Bergamaschi, Laura, Peñalver, Ana, Richoz, Nathan, Moore, Stephen D., Ortmann, Brian M., Dunmore, Benjamin J., Morgan, Michael D., Tuong, Zewen Kelvin, Göttgens, Berthold, Toshner, Mark, Hess, Christoph, Maxwell, Patrick. H., Clatworthy, Menna. R., Nathan, James A., Bradley, John R., Lyons, Paul A., Burrows, Natalie and Smith, Kenneth G.C. (2022). The impact of hypoxia on B cells in COVID-19. eBioMedicine, 77 103878, 103878. doi: 10.1016/j.ebiom.2022.103878

The impact of hypoxia on B cells in COVID-19

2022

Journal Article

B cell receptor repertoire kinetics after SARS-CoV-2 infection and vaccination

Kotagiri, Prasanti, Mescia, Federica, Rae, William M., Bergamaschi, Laura, Tuong, Zewen K., Turner, Lorinda, Hunter, Kelvin, Gerber, Pehuén P., Hosmillo, Myra, Hess, Christoph, Clatworthy, Menna R., Goodfellow, Ian G., Matheson, Nicholas J., McKinney, Eoin F., Wills, Mark R., Gupta, Ravindra K., Bradley, John R., Bashford-Rogers, Rachael J.M., Lyons, Paul A. and Smith, Kenneth G.C. (2022). B cell receptor repertoire kinetics after SARS-CoV-2 infection and vaccination. Cell Reports, 38 (7) 110393, 110393. doi: 10.1016/j.celrep.2022.110393

B cell receptor repertoire kinetics after SARS-CoV-2 infection and vaccination

2022

Journal Article

Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity

Uzzan, Mathieu, Martin, Jerome C., Mesin, Luka, Livanos, Alexandra E., Castro-Dopico, Tomas, Huang, Ruiqi, Petralia, Francesca, Magri, Giuliana, Kumar, Shashi, Zhao, Qing, Rosenstein, Adam K., Tokuyama, Minami, Sharma, Keshav, Ungaro, Ryan, Kosoy, Roman, Jha, Divya, Fischer, Jeremy, Singh, Harpriya, Keir, Mary E., Ramamoorthi, Nandhini, Gorman, William E. O’, Cohen, Benjamin L., Rahman, Adeeb, Cossarini, Francesca, Seki, Akihiro, Leyre, Louise, Vaquero, Sonia Tejedor, Gurunathan, Sakteesh, Grasset, Emilie K. ... Mehandru, Saurabh (2022). Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity. Nature Medicine, 28 (4), 766-779. doi: 10.1038/s41591-022-01680-y

Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity

2022

Journal Article

Secreted toxins from Staphylococcus aureus strains isolated from keratinocyte skin cancers mediate pro-tumorigenic inflammatory responses in the skin

Krueger, Annika, Zaugg, Julian, Chisholm, Sarah, Linedale, Richard, Lachner, Nancy, Teoh, Siok Min, Tuong, Zewen K., Lukowski, Samuel W., Morrison, Mark, Soyer, H. Peter, Hugenholtz, Philip, Hill, Michelle M. and Frazer, Ian H. (2022). Secreted toxins from Staphylococcus aureus strains isolated from keratinocyte skin cancers mediate pro-tumorigenic inflammatory responses in the skin. Frontiers in Microbiology, 12 789042, 789042. doi: 10.3389/fmicb.2021.789042

Secreted toxins from Staphylococcus aureus strains isolated from keratinocyte skin cancers mediate pro-tumorigenic inflammatory responses in the skin

2022

Journal Article

Epigenetics and tissue immunity—translating environmental cues into functional adaptations*

Tuong, Zewen Kelvin, Stewart, Benjamin J., Guo, Shuang Andrew and Clatworthy, Menna R. (2022). Epigenetics and tissue immunity—translating environmental cues into functional adaptations*. Immunological Reviews, 305 (1), 111-136. doi: 10.1111/imr.13036

Epigenetics and tissue immunity—translating environmental cues into functional adaptations*

2021

Journal Article

Resolving the immune landscape of human prostate at a single-cell level in health and cancer

Tuong, Zewen Kelvin, Loudon, Kevin W., Berry, Brendan, Richoz, Nathan, Jones, Julia, Tan, Xiao, Nguyen, Quan, George, Anne, Hori, Satoshi, Field, Sarah, Lynch, Andy G., Kania, Katarzyna, Coupland, Paul, Babbage, Anne, Grenfell, Richard, Barrett, Tristan, Warren, Anne Y., Gnanapragasam, Vincent, Massie, Charlie and Clatworthy, Menna R. (2021). Resolving the immune landscape of human prostate at a single-cell level in health and cancer. Cell Reports, 37 (12) 110132, 110132. doi: 10.1016/j.celrep.2021.110132

Resolving the immune landscape of human prostate at a single-cell level in health and cancer

2021

Journal Article

Aldehyde-driven transcriptional stress triggers an anorexic DNA damage response

Mulderrig, Lee, Garaycoechea, Juan I., Tuong, Zewen K., Millington, Christopher L., Dingler, Felix A., Ferdinand, John R., Gaul, Liam, Tadross, John A., Arends, Mark J., O’Rahilly, Stephen, Crossan, Gerry P., Clatworthy, Menna R. and Patel, Ketan J. (2021). Aldehyde-driven transcriptional stress triggers an anorexic DNA damage response. Nature, 600 (7887), 158-163. doi: 10.1038/s41586-021-04133-7

Aldehyde-driven transcriptional stress triggers an anorexic DNA damage response

2021

Journal Article

B-cells are abnormal in psychosocial stress and regulate meningeal myeloid cell activation

Lynall, Mary-Ellen, Kigar, Stacey L., Lehmann, Michael L., DePuyt, Allison E., Tuong, Zewen Kelvin, Listwak, Samuel J., Elkahloun, Abdel G., Bullmore, Edward T., Herkenham, Miles and Clatworthy, Menna R. (2021). B-cells are abnormal in psychosocial stress and regulate meningeal myeloid cell activation. Brain, Behavior, and Immunity, 97, 226-238. doi: 10.1016/j.bbi.2021.08.002

B-cells are abnormal in psychosocial stress and regulate meningeal myeloid cell activation

2021

Journal Article

A model of impaired Langerhans cell maturation associated with HPV induced epithelial hyperplasia

Tuong, Zewen K., Lukowski, Samuel W., Nguyen, Quan H., Chandra, Janin, Zhou, Chenhao, Gillinder, Kevin, Bashaw, Abate A., Ferdinand, John R., Stewart, Benjamin J., Teoh, Siok Min, Hanson, Sarah J., Devitt, Katharina, Clatworthy, Menna R., Powell, Joseph E. and Frazer, Ian H. (2021). A model of impaired Langerhans cell maturation associated with HPV induced epithelial hyperplasia. iScience, 24 (11) 103326, 103326. doi: 10.1016/j.isci.2021.103326

A model of impaired Langerhans cell maturation associated with HPV induced epithelial hyperplasia

2021

Conference Publication

Tissue-resident B cells orchestrate macrophage phenotype and function in non-lymphoid organs

Suchanek, Ondrej, Ferdinand, John R., Wijeyesinghe, Sathi, Tuong, Zewen K., Clare, Simon, Rogers, Rachael Bashford, Chandra, Anita, Mahbubani, Krishnaa, Lawley, Trevor, Okkenhaug, Klaus, Masopust, David and Clatworthy, Menna R. (2021). Tissue-resident B cells orchestrate macrophage phenotype and function in non-lymphoid organs. HOBOKEN: WILEY.

Tissue-resident B cells orchestrate macrophage phenotype and function in non-lymphoid organs

2021

Journal Article

IFN-γ critically enables the intratumoural infiltration of CXCR3+ CD8+ T cells to drive squamous cell carcinoma regression

Zeng, Zhen, Veitch, Margaret, Kelly, Gabrielle A., Tuong, Zewen K., Cruz, Jazmina G., Frazer, Ian H. and Wells, James W. (2021). IFN-γ critically enables the intratumoural infiltration of CXCR3+ CD8+ T cells to drive squamous cell carcinoma regression. Cancers, 13 (9) 2131, 2131. doi: 10.3390/cancers13092131

IFN-γ critically enables the intratumoural infiltration of CXCR3+ CD8+ T cells to drive squamous cell carcinoma regression

2021

Journal Article

Antigen nonspecific induction of distinct regulatory T cell states in oncogene-driven hyperproliferative skin

Zhou, Chenhao, Tuong, Zewen Kelvin, Lukowski, Samuel Wieslaw, Chandra, Janin and Frazer, Ian H. (2021). Antigen nonspecific induction of distinct regulatory T cell states in oncogene-driven hyperproliferative skin. ImmunoHorizons, 5 (2), 102-116. doi: 10.4049/immunohorizons.2100006

Antigen nonspecific induction of distinct regulatory T cell states in oncogene-driven hyperproliferative skin

2021

Journal Article

Manganese-doped silica-based nanoparticles promote the efficacy of antigen-specific immunotherapy

Chandra, Janin, Teoh, Siok Min, Kuo, Paula, Tolley, Lynn, Bashaw, Abate Assefa, Tuong, Zewen Kelvin, Liu, Yang, Chen, Zibin, Wells, James W., Yu, Chengzhong, Frazer, Ian H. and Yu, Meihua (2021). Manganese-doped silica-based nanoparticles promote the efficacy of antigen-specific immunotherapy. The Journal of Immunology, 206 (5), ji2000355-998. doi: 10.4049/jimmunol.2000355

Manganese-doped silica-based nanoparticles promote the efficacy of antigen-specific immunotherapy

2021

Journal Article

Single-cell multi-omics analysis of the immune response in COVID-19

Stephenson, Emily, Reynolds, Gary, Botting, Rachel A., Calero-Nieto, Fernando J., Morgan, Michael D., Tuong, Zewen Kelvin, Bach, Karsten, Sungnak, Waradon, Worlock, Kaylee B., Yoshida, Masahiro, Kumasaka, Natsuhiko, Kania, Katarzyna, Engelbert, Justin, Olabi, Bayanne, Spegarova, Jarmila Stremenova, Wilson, Nicola K., Mende, Nicole, Jardine, Laura, Gardner, Louis C. S., Goh, Issac, Horsfall, Dave, McGrath, Jim, Webb, Simone, Mather, Michael W., Lindeboom, Rik G. H., Dann, Emma, Huang, Ni, Polanski, Krzysztof, Prigmore, Elena ... Haniffa, Muzlifah (2021). Single-cell multi-omics analysis of the immune response in COVID-19. Nature Medicine, 27 (5), 904-916. doi: 10.1038/s41591-021-01329-2

Single-cell multi-omics analysis of the immune response in COVID-19

2020

Journal Article

Increased lipid metabolism impairs NK cell function and mediates adaptation to the lymphoma environment

Kobayashi, Takumi, Lam, Pui Yeng, Jiang, Hui, Bednarska, Karolina, Gloury, Renee Elyse, Murigneux, Valentine, Tay, Joshua, Jacquelot, Nicolas, Li, Rui, Tuong, Zewen Kelvin, Leggatt, Graham, Gandhi, Maher K., Hill, Michelle M, Belz, Gabrielle T., Ngo, Shyuan, Kallies, Axel and Mattarollo, Stephen R. (2020). Increased lipid metabolism impairs NK cell function and mediates adaptation to the lymphoma environment. Blood, 136 (26), 3004-3017. doi: 10.1182/blood.2020005602

Increased lipid metabolism impairs NK cell function and mediates adaptation to the lymphoma environment

2020

Journal Article

Gut-educated IgA plasma cells defend the meningeal venous sinuses

Fitzpatrick, Zachary, Frazer, Gordon, Ferro, Ashley, Clare, Simon, Bouladoux, Nicolas, Ferdinand, John, Tuong, Zewen Kelvin, Negro-Demontel, Maria Luciana, Kumar, Nitin, Suchanek, Ondrej, Tajsic, Tamara, Harcourt, Katherine, Scott, Kirsten, Bashford-Rogers, Rachel, Helmy, Adel, Reich, Daniel S, Belkaid, Yasmine, Lawley, Trevor D, McGavern, Dorian B and Clatworthy, Menna R (2020). Gut-educated IgA plasma cells defend the meningeal venous sinuses. Nature, 587 (7834), 472-476. doi: 10.1038/s41586-020-2886-4

Gut-educated IgA plasma cells defend the meningeal venous sinuses

2020

Journal Article

B lymphocyte-derived CCL7 augments neutrophil and monocyte recruitment, exacerbating acute kidney injury

Inaba, Akimichi, Tuong, Zewen K., Riding, Alexandra M., Mathews, Rebeccah J., Martin, Jack L., Saeb-Parsy, Kourosh and Clatworthy, Menna R. (2020). B lymphocyte-derived CCL7 augments neutrophil and monocyte recruitment, exacerbating acute kidney injury. Journal of Immunology, 205 (5), 1376-1384. doi: 10.4049/jimmunol.2000454

B lymphocyte-derived CCL7 augments neutrophil and monocyte recruitment, exacerbating acute kidney injury

2020

Journal Article

Organ immune responses — don’t forget the structural cells

Tuong, Zewen Kelvin and Clatworthy, Menna R. (2020). Organ immune responses — don’t forget the structural cells. Nature Reviews Nephrology, 16 (10), 570-571. doi: 10.1038/s41581-020-00334-x

Organ immune responses — don’t forget the structural cells

2020

Journal Article

GM-CSF Calibrates Macrophage Defense and Wound Healing Programs during Intestinal Infection and Inflammation

Castro-Dopico, Tomas, Fleming, Aaron, Dennison, Thomas W., Ferdinand, John R., Harcourt, Katherine, Stewart, Benjamin J., Cader, Zaeem, Tuong, Zewen K., Jing, Chenzhi, Lok, Laurence S. C., Mathews, Rebeccah J., Portet, Anaïs, Kaser, Arthur, Clare, Simon and Clatworthy, Menna R. (2020). GM-CSF Calibrates Macrophage Defense and Wound Healing Programs during Intestinal Infection and Inflammation. Cell Reports, 32 (1) 107857, 107857. doi: 10.1016/j.celrep.2020.107857

GM-CSF Calibrates Macrophage Defense and Wound Healing Programs during Intestinal Infection and Inflammation

Funding

Current funding

  • 2024 - 2029
    Paediatric Immune Cell Atlas for Immunotherapy Innovation (PICACHIU)
    MRFF - National Critical Infrastructure Initiative
    Open grant
  • 2024 - 2026
    Deciphering interleukin-21 agonism in boosting CD8+ T cell mediated anti-tumour immunity to engineer next-generation immunotherapies
    Cure Cancer Early Career Research Grants
    Open grant

Past funding

  • 2017 - 2018
    Is there really a viral cause for skin cancer?
    Australasian College of Dermatologists Scientific Research Fund
    Open grant
  • 2017 - 2019
    Approaching antigen-presenting cell immunotherapy for cervical cancers using single-cell transcriptomics
    Advance Queensland Research Fellowships
    Open grant

Supervision

Availability

Dr Kelvin Tuong is:
Available for supervision

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Available projects

  • Developing single-cell analysis methods harnessing adaptive immune receptors

    The direct linkage of adaptive immune receptor repertoire with cellular phenotypes from single-cell sequencing technology has proven to be a powerful tool in understanding lymphocyte development and function in healthy and disease contexts. Multi-omics analysis leverages data from different modalities e.g. transcriptomics, epigenetics, proteomics. Recent advances has successfully integrated the data modalities to study cellular biology at an unprecedented resolution. However, unlike the other data modalities, which are largely continuous data, single-cell adaptive immune receptor sequencing (scVDJ-seq) data are a mixture of categorical and continuous data which poses additional challenges for integration. It consists of annotations of variable (V), diversity (D) and joining (J) genes, which are selected and recombined during B/T-cell development. The technology to profile this at the single cell level with paired gene expression data is relatively new. I have led the development of Dandelion, a scVDJ-seq software framework which has been used to deeply profile single-cell lymphocyte biology and I aim to expand on the its capabilities for immunology research.

Supervision history

Current supervision

  • Doctor Philosophy

    Advancing Paediatric Cancer Immunotherapy with Antigen Receptors and Artificial Intelligence

    Principal Advisor

    Other advisors: Dr Yang Yang

  • Doctor Philosophy

    A Comprehensive Paediatric Immune Cell Atlas for Children's Immunotherapy Innovation

    Principal Advisor

    Other advisors: Dr Quan Nguyen, Professor Di Yu

  • Doctor Philosophy

    Harnessing adaptive immune receptors to monitor paediatric immunity in cancer and enhance neoantigen vaccine pipeline

    Principal Advisor

    Other advisors: Professor Di Yu, Dr Jazmina Gonzalez Cruz

  • Doctor Philosophy

    Investigate T cell specificity and function in immune responses by systems immunology

    Associate Advisor

    Other advisors: Dr Yang Yang, Professor Di Yu

  • Doctor Philosophy

    Decipher interleukin-21 signaling and engineer next generation immunotherapies

    Associate Advisor

    Other advisors: Dr Zhian Chen

  • Doctor Philosophy

    Development of novel vaccines for cancer immunotherapy

    Associate Advisor

    Other advisors: Professor Maher Gandhi, Honorary Professor Kristen Radford

Completed supervision

Media

Enquiries

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