
Overview
Background
Dr. Kelvin Tuong is a Senior Research Fellow/Group Leader at the Ian Frazer Centre for Children’s Immunotherapy Research (IFCCIR), Child Health Research Centre. He is interested in single-cell analysis of immune cells and harnessing adaptive immune receptors for understanding immune cell development and function in health and in cancer.
Dr. Tuong was born and raised in Singapore and moved to Brisbane, Australia, after completing national service in Singapore and obtaining a Diploma in Biomedical Laboratory Technology (Ngee Ann Polytechnic).
Dr. Tuong was originally trained as a molecular cell biologist and gradually transitioned into bioinformatics during his post-doctoral training. He has been very prolific for an early career researcher, having published >70 articles since 2013, with nearly a third of them as first/co-first or last author and has a stellar track record of pushing out highly collaborative work in prestigious journals including Nature, Cell, Science, Nature Medicine, Nature Biotechnology J Exp Med etc. He has the rare combination of having excellent laboratory and bioinformatics skill sets which provide him a strong command of both fundamental immunology and computational approaches.
Dr. Tuong completed his undergraduate Bachelor's degree in Biomedical science with Class I Honours, followed by his PhD in macrophage cell biology and endocrinology at UQ (Prof. Jenny Stow lab and Emiritus Prof. George Muscat lab, IMB, UQ). He then went on to a post-doc position with Emiritus Prof. Ian Frazer (co-inventor of the Gardasil cervical cancer vaccine, UQ Frazer Institute, Translational Research Institute) where he worked on HPV immunology, cervical cancer and skin cancer. In his time in the Frazer lab, he developed an interest in bioinformatics analyses as a means to tackle and understanding immunology problems in health and disease. He then moved to the UK and joined Prof. Menna Clatworthy's lab at the University of Cambridge and Dr. Sarah Teichmann's lab at the Wellcome Trust Sanger Institute. He has focused his interests on single-cell analyses of tissue immune cells, including T and B cells and their specific receptors (TCR/BCR). He has developed bespoke bioinformatics software, including one tailored for single-cell B Cell Receptor sequencing analysis, Dandelion, which he used in one of the largest combined single-cell transcriptomic, surface proteomic and TCR/BCR sequencing dataset in the world, published in Nature Medicine, and more recently in Nature Biotechnology where we introduced a TCR-based pseudotime trajectory analysis method.
Dr. Tuong is now leading the Computational Immunology group at the IFCCIR and his lab is focused on investigating how pediatric immunity is perturbed during cancer at the cellular level and how this information can be used for creating novel warning systems for children with cancer. For potential students/post-docs/trainees interested in joining the team, please contact Dr. Tuong at z.tuong@uq.edu.au.
Availability
- Dr Kelvin Tuong is:
- Available for supervision
- Media expert
Fields of research
Qualifications
- Doctor of Philosophy, The University of Queensland
Research interests
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Deep learning of immune repertoires
T cells and B cells play a critical role in recognizing and eliminating cancer cells through their highly specific adaptive immune receptors. Our vision is to harness the power of these receptors to enable early cancer detection and real-time disease monitoring, particularly in children. These receptors act as natural "time-keepers" of the immune system’s engagement with tumors, capturing a molecular history of the immune response as cancer progresses. Our research focuses on understanding the properties that make these immune cells effective in the context of childhood cancers. Using high-resolution single-cell gene expression profiling, we aim to uncover how T and B cells behave in pediatric patients and how their receptors evolve during disease and treatment. To achieve this, we are developing new computational tools and algorithms designed to analyze immune receptor sequences and their expression patterns. Using deep learning, we aim to identify receptor signatures that are specific to cancer, and use these patterns to predict therapeutic responses and monitor disease progression in children with blood cancers. This approach offers a path toward highly sensitive tool for early detection and long-term monitoring of pediatric immunity and cancer.
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Single-cell prediction of cancer cells
We’re interested in using deep learning to make sense of single-cell RNA sequencing (scRNA-seq) data, especially to uncover copy number variations (CNVs) that are often hidden in the noise of single-cell measurements. CNVs are a key feature in many cancers, but detecting them reliably at the single-cell level is still a challenge. Rather than relying on traditional approaches that often struggle with the sparse and noisy nature of scRNA-seq, we’re exploring how deep learning models can be trained to recognize subtle patterns in gene expression that point to underlying genomic alterations. Our goal is to build tools that can separate cancer cells from normal cells based on these inferred CNVs, helping us better understand tumor composition, heterogeneity, and evolution. This work has implications not just for identifying malignant cells, but also for tracking how tumors change over time or respond to treatment. We’re also interested in combining this with other data types—like epigenomic or spatial information—to build a more complete picture of what’s happening inside tumors at the single-cell level. We approach this work from both a computational and biological perspective, and we’re motivated by the potential for these methods to contribute to more personalized and effective cancer diagnostics.
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Paediatric Immune Cell Atlas
We’re building the largest immune cell atlas of Australian children to date, profiling blood samples from over 1,000 healthy and disease-affected children using single-cell RNA sequencing (scRNA-seq). Our goal is to create a high-resolution map of the developing immune system in early life—a period when immune function is still maturing and highly dynamic. Children’s immune systems differ significantly from those of adults, yet they remain understudied in immunology. By analyzing immune cell populations at single-cell resolution, we’re uncovering how these cells change with age, how they respond to infections or immune-related diseases, and how early-life immunity is shaped by both genetic and environmental factors. To fully capture the complexity of the pediatric immune system, we’re incorporating machine learning and deep learning approaches to uncover subtle patterns and rare cell states across this large and diverse dataset. We’re also applying integrative methods to link scRNA-seq data with immune repertoire sequencing, enabling us to explore how T and B cell clonality and diversity contribute to immune development and disease. This work has important implications for understanding pediatric diseases, identifying early biomarkers of immune dysregulation, and designing age-specific diagnostics and therapies. In addition to its clinical relevance, the atlas will serve as a foundational reference for researchers working in pediatric immunology and systems biology.
Works
Search Professor Kelvin Tuong’s works on UQ eSpace
2022
Journal Article
Obesity is associated with attenuated tissue immunity in COVID-19
Guo, Shuang A., Bowyer, Georgina S., Ferdinand, John R., Maes, Mailis, Tuong, Zewen K., Gillman, Eleanor, Liao, Mingfeng, Lindeboom, Rik G H, Yoshida, Masahiro, Worlock, Kaylee, Gopee, Hudaa, Stephenson, Emily, Gao, Catherine A, Lyons, Paul A, Smith, Kenneth G C, Haniffa, Muzlifah, Meyer, Kerstin B, Nikolić, Marko Z, Zhang, Zheng, Wunderink, Richard G, Misharin, Alexander V, Dougan, Gordon, Navapurkar, Vilas, Teichmann, Sarah A, Conway Morris, Andrew and Clatworthy, Menna R (2022). Obesity is associated with attenuated tissue immunity in COVID-19. American Journal of Respiratory and Critical Care Medicine, 207 (5), 566-576. doi: 10.1164/rccm.202204-0751OC
2022
Journal Article
Fracture hematoma micro-architecture influences transcriptional profile and plays a crucial role in determining bone healing outcomes
Woloszyk, Anna, Tuong, Zewen K., Perez, Louis, Aguilar, Leonardo, Bankole, Abraham I., Evans, Christopher H. and Glatt, Vaida (2022). Fracture hematoma micro-architecture influences transcriptional profile and plays a crucial role in determining bone healing outcomes. Biomaterials Advances, 139 213027, 1-15. doi: 10.1016/j.bioadv.2022.213027
2022
Journal Article
A robust experimental and computational analysis framework at multiple resolutions, modalities and coverages
Tran, M., Yoon, S., Teoh, M., Andersen, S., Lam, PY., Purdue, B. W., Raghubar, A., Hanson, S.J., Devitt, K., Jones, K., Walters, S., Monkman, J., Kulasinghe, A., Tuong, Z.K., Soyer, H.P., Frazer, I. H. and Nguyen, Q. (2022). A robust experimental and computational analysis framework at multiple resolutions, modalities and coverages. Frontiers in Immunology, 13 911873, 911873. doi: 10.3389/fimmu.2022.911873
2022
Journal Article
Group 3 innate lymphocytes make a distinct contribution to type 17 immunity in bladder defence
Riding, Alexandra M., Loudon, Kevin W., Guo, Andrew, Ferdinand, John R., Lok, Laurence S.C., Richoz, Nathan, Stewart, Andrew, Castro-Dopico, Tomas, Tuong, Zewen Kelvin, Fiancette, Remi, Bowyer, Georgina S., Fleming, Aaron, Gillman, Eleanor S., Suchanek, Ondrej, Mahbubani, Krishnaa T., Saeb-Parsy, Kourosh, Withers, David, Dougan, Gordan, Clare, Simon and Clatworthy, Menna R. (2022). Group 3 innate lymphocytes make a distinct contribution to type 17 immunity in bladder defence. iScience, 25 (7) 104660, 1-30. doi: 10.1016/j.isci.2022.104660
2022
Journal Article
Mapping the developing human immune system across organs
Suo, Chenqu, Dann, Emma, Goh, Issac, Jardine, Laura, Kleshchevnikov, Vitalii, Park, Jong-Eun, Botting, Rachel A., Stephenson, Emily, Engelbert, Justin, Tuong, Zewen Kelvin, Polanski, Krzysztof, Yayon, Nadav, Xu, Chuan, Suchanek, Ondrej, Elmentaite, Rasa, Domínguez Conde, Cecilia, He, Peng, Pritchard, Sophie, Miah, Mohi, Moldovan, Corina, Steemers, Alexander S., Mazin, Pavel, Prete, Martin, Horsfall, Dave, Marioni, John C., Clatworthy, Menna R., Haniffa, Muzlifah and Teichmann, Sarah A. (2022). Mapping the developing human immune system across organs. Science, 376 (6597) eabo0510, eabo0510-+. doi: 10.1126/science.abo0510
2022
Journal Article
Cross-tissue immune cell analysis reveals tissue-specific features in humans
Domínguez Conde, C., Xu, C., Jarvis, L. B., Rainbow, D. B., Wells, S. B., Gomes, T., Howlett, S. K., Suchanek, O., Polanski, K., King, H. W., Mamanova, L., Huang, N., Szabo, P. A., Richardson, L., Bolt, L., Fasouli, E. S., Mahbubani, K. T., Prete, M., Tuck, L., Richoz, N., Tuong, Z. K., Campos, L., Mousa, H. S., Needham, E. J., Pritchard, S., Li, T., Elmentaite, R., Park, J., Rahmani, E. ... Teichmann, S. A. (2022). Cross-tissue immune cell analysis reveals tissue-specific features in humans. Science, 376 (6594) eabl5197, eabl5197-+. doi: 10.1126/science.abl5197
2022
Journal Article
GIMAP6 regulates autophagy, immune competence, and inflammation in mice and humans
Yao, Yikun, Du Jiang, Ping, Chao, Brittany N., Cagdas, Deniz, Kubo, Satoshi, Balasubramaniyam, Arasu, Zhang, Yu, Shadur, Bella, NaserEddin, Adeeb, Folio, Les R., Schwarz, Benjamin, Bohrnsen, Eric, Zheng, Lixin, Lynberg, Matthew, Gottlieb, Simone, Leney-Greene, Michael A., Park, Ann Y., Tezcan, Ilhan, Akdogan, Ali, Gocmen, Rahsan, Onder, Sevgen, Rosenberg, Avi, Soilleux, Elizabeth J., Johnson, Errin, Jackson, Peter K., Demeter, Janos, Chauvin, Samuel D., Paul, Florian, Selbach, Matthias ... Lenardo, Michael J. (2022). GIMAP6 regulates autophagy, immune competence, and inflammation in mice and humans. Journal of Experimental Medicine, 219 (6) e20201405, 1-29. doi: 10.1084/jem.20201405
2022
Journal Article
In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue
Li, Zhi, Tuong, Zewen K., Dean, Isaac, Willis, Claire, Gaspal, Fabrina, Fiancette, Rémi, Idris, Suaad, Kennedy, Bethany, Ferdinand, John R., Peñalver, Ana, Cabantous, Mia, Murtuza Baker, Syed, Fry, Jeremy W., Carlesso, Gianluca, Hammond, Scott A., Dovedi, Simon J., Hepworth, Matthew R., Clatworthy, Menna R. and Withers, David R. (2022). In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue. Journal of Experimental Medicine, 219 (6) e20210749, 1-27. doi: 10.1084/jem.20210749
2022
Journal Article
The impact of hypoxia on B cells in COVID-19
Kotagiri, Prasanti, Mescia, Federica, Hanson, Aimee L., Turner, Lorinda, Bergamaschi, Laura, Peñalver, Ana, Richoz, Nathan, Moore, Stephen D., Ortmann, Brian M., Dunmore, Benjamin J., Morgan, Michael D., Tuong, Zewen Kelvin, Göttgens, Berthold, Toshner, Mark, Hess, Christoph, Maxwell, Patrick. H., Clatworthy, Menna. R., Nathan, James A., Bradley, John R., Lyons, Paul A., Burrows, Natalie and Smith, Kenneth G.C. (2022). The impact of hypoxia on B cells in COVID-19. eBioMedicine, 77 103878, 103878. doi: 10.1016/j.ebiom.2022.103878
2022
Journal Article
B cell receptor repertoire kinetics after SARS-CoV-2 infection and vaccination
Kotagiri, Prasanti, Mescia, Federica, Rae, William M., Bergamaschi, Laura, Tuong, Zewen K., Turner, Lorinda, Hunter, Kelvin, Gerber, Pehuén P., Hosmillo, Myra, Hess, Christoph, Clatworthy, Menna R., Goodfellow, Ian G., Matheson, Nicholas J., McKinney, Eoin F., Wills, Mark R., Gupta, Ravindra K., Bradley, John R., Bashford-Rogers, Rachael J.M., Lyons, Paul A. and Smith, Kenneth G.C. (2022). B cell receptor repertoire kinetics after SARS-CoV-2 infection and vaccination. Cell Reports, 38 (7) 110393, 110393. doi: 10.1016/j.celrep.2022.110393
2022
Journal Article
Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity
Uzzan, Mathieu, Martin, Jerome C., Mesin, Luka, Livanos, Alexandra E., Castro-Dopico, Tomas, Huang, Ruiqi, Petralia, Francesca, Magri, Giuliana, Kumar, Shashi, Zhao, Qing, Rosenstein, Adam K., Tokuyama, Minami, Sharma, Keshav, Ungaro, Ryan, Kosoy, Roman, Jha, Divya, Fischer, Jeremy, Singh, Harpriya, Keir, Mary E., Ramamoorthi, Nandhini, Gorman, William E. O’, Cohen, Benjamin L., Rahman, Adeeb, Cossarini, Francesca, Seki, Akihiro, Leyre, Louise, Vaquero, Sonia Tejedor, Gurunathan, Sakteesh, Grasset, Emilie K. ... Mehandru, Saurabh (2022). Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity. Nature Medicine, 28 (4), 766-779. doi: 10.1038/s41591-022-01680-y
2022
Journal Article
Secreted toxins from Staphylococcus aureus strains isolated from keratinocyte skin cancers mediate pro-tumorigenic inflammatory responses in the skin
Krueger, Annika, Zaugg, Julian, Chisholm, Sarah, Linedale, Richard, Lachner, Nancy, Teoh, Siok Min, Tuong, Zewen K., Lukowski, Samuel W., Morrison, Mark, Soyer, H. Peter, Hugenholtz, Philip, Hill, Michelle M. and Frazer, Ian H. (2022). Secreted toxins from Staphylococcus aureus strains isolated from keratinocyte skin cancers mediate pro-tumorigenic inflammatory responses in the skin. Frontiers in Microbiology, 12 789042, 789042. doi: 10.3389/fmicb.2021.789042
2022
Journal Article
Epigenetics and tissue immunity—translating environmental cues into functional adaptations*
Tuong, Zewen Kelvin, Stewart, Benjamin J., Guo, Shuang Andrew and Clatworthy, Menna R. (2022). Epigenetics and tissue immunity—translating environmental cues into functional adaptations*. Immunological Reviews, 305 (1), 111-136. doi: 10.1111/imr.13036
2021
Journal Article
Resolving the immune landscape of human prostate at a single-cell level in health and cancer
Tuong, Zewen Kelvin, Loudon, Kevin W., Berry, Brendan, Richoz, Nathan, Jones, Julia, Tan, Xiao, Nguyen, Quan, George, Anne, Hori, Satoshi, Field, Sarah, Lynch, Andy G., Kania, Katarzyna, Coupland, Paul, Babbage, Anne, Grenfell, Richard, Barrett, Tristan, Warren, Anne Y., Gnanapragasam, Vincent, Massie, Charlie and Clatworthy, Menna R. (2021). Resolving the immune landscape of human prostate at a single-cell level in health and cancer. Cell Reports, 37 (12) 110132, 110132. doi: 10.1016/j.celrep.2021.110132
2021
Journal Article
Aldehyde-driven transcriptional stress triggers an anorexic DNA damage response
Mulderrig, Lee, Garaycoechea, Juan I., Tuong, Zewen K., Millington, Christopher L., Dingler, Felix A., Ferdinand, John R., Gaul, Liam, Tadross, John A., Arends, Mark J., O’Rahilly, Stephen, Crossan, Gerry P., Clatworthy, Menna R. and Patel, Ketan J. (2021). Aldehyde-driven transcriptional stress triggers an anorexic DNA damage response. Nature, 600 (7887), 158-163. doi: 10.1038/s41586-021-04133-7
2021
Journal Article
A model of impaired Langerhans cell maturation associated with HPV induced epithelial hyperplasia
Tuong, Zewen K., Lukowski, Samuel W., Nguyen, Quan H., Chandra, Janin, Zhou, Chenhao, Gillinder, Kevin, Bashaw, Abate A., Ferdinand, John R., Stewart, Benjamin J., Teoh, Siok Min, Hanson, Sarah J., Devitt, Katharina, Clatworthy, Menna R., Powell, Joseph E. and Frazer, Ian H. (2021). A model of impaired Langerhans cell maturation associated with HPV induced epithelial hyperplasia. iScience, 24 (11) 103326, 103326. doi: 10.1016/j.isci.2021.103326
2021
Journal Article
B-cells are abnormal in psychosocial stress and regulate meningeal myeloid cell activation
Lynall, Mary-Ellen, Kigar, Stacey L., Lehmann, Michael L., DePuyt, Allison E., Tuong, Zewen Kelvin, Listwak, Samuel J., Elkahloun, Abdel G., Bullmore, Edward T., Herkenham, Miles and Clatworthy, Menna R. (2021). B-cells are abnormal in psychosocial stress and regulate meningeal myeloid cell activation. Brain, Behavior, and Immunity, 97, 226-238. doi: 10.1016/j.bbi.2021.08.002
2021
Conference Publication
Tissue-resident B cells orchestrate macrophage phenotype and function in non-lymphoid organs
Suchanek, Ondrej, Ferdinand, John R., Wijeyesinghe, Sathi, Tuong, Zewen K., Clare, Simon, Rogers, Rachael Bashford, Chandra, Anita, Mahbubani, Krishnaa, Lawley, Trevor, Okkenhaug, Klaus, Masopust, David and Clatworthy, Menna R. (2021). Tissue-resident B cells orchestrate macrophage phenotype and function in non-lymphoid organs. HOBOKEN: WILEY.
2021
Journal Article
IFN-γ critically enables the intratumoural infiltration of CXCR3+ CD8+ T cells to drive squamous cell carcinoma regression
Zeng, Zhen, Veitch, Margaret, Kelly, Gabrielle A., Tuong, Zewen K., Cruz, Jazmina G., Frazer, Ian H. and Wells, James W. (2021). IFN-γ critically enables the intratumoural infiltration of CXCR3+ CD8+ T cells to drive squamous cell carcinoma regression. Cancers, 13 (9) 2131, 2131. doi: 10.3390/cancers13092131
2021
Journal Article
Antigen nonspecific induction of distinct regulatory T cell states in oncogene-driven hyperproliferative skin
Zhou, Chenhao, Tuong, Zewen Kelvin, Lukowski, Samuel Wieslaw, Chandra, Janin and Frazer, Ian H. (2021). Antigen nonspecific induction of distinct regulatory T cell states in oncogene-driven hyperproliferative skin. ImmunoHorizons, 5 (2), 102-116. doi: 10.4049/immunohorizons.2100006
Funding
Current funding
Past funding
Supervision
Availability
- Dr Kelvin Tuong is:
- Available for supervision
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Supervision history
Current supervision
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Doctor Philosophy
Harnessing adaptive immune receptors to monitor paediatric immunity in cancer and enhance neoantigen vaccine pipeline
Principal Advisor
Other advisors: Professor Di Yu, Dr Jazmina Gonzalez Cruz
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Doctor Philosophy
A Comprehensive Paediatric Immune Cell Atlas for Children's Immunotherapy Innovation
Principal Advisor
Other advisors: Dr Quan Nguyen, Professor Di Yu
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Doctor Philosophy
Advancing Paediatric Cancer Immunotherapy with Antigen Receptors and Artificial Intelligence
Principal Advisor
Other advisors: Dr Yang Yang
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Doctor Philosophy
Development of novel vaccines for cancer immunotherapy
Associate Advisor
Other advisors: Professor Maher Gandhi, Honorary Professor Kristen Radford
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Doctor Philosophy
Pipelines to model immune signalling networks in barrier tissue protection
Associate Advisor
Other advisors: Professor Gabrielle Belz
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Doctor Philosophy
Decipher interleukin-21 signaling and engineer next generation immunotherapies
Associate Advisor
Other advisors: Dr Zhian Chen
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Doctor Philosophy
Investigate T cell specificity and function in immune responses by systems immunology
Associate Advisor
Other advisors: Dr Yang Yang, Professor Di Yu
Completed supervision
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2022
Doctor Philosophy
Understanding CD4+ T cell responses to HPV16 E7 antigen in a mouse model of precancerous skin
Associate Advisor
Other advisors: Professor Ian Frazer, Dr Janin Chandra
Media
Enquiries
Contact Dr Kelvin Tuong directly for media enquiries about:
- Cancer
- Genomics
- Immunology
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