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Dr Loan Nguyen
Dr

Loan Nguyen

Email: 
Phone: 
+61 7 334 62179

Overview

Background

Dr. Nguyen is an expert in applying long-read Oxford Nanopore Sequencing Technologies (ONT) in agriculture, particularly livestock and other sectors. Her groundbreaking contributions include being the pioneer in sequencing the genomes of Brahman and Wagyu cattle, developing an innovative epigenetic clock for age prediction in cattle, and successfully implementing ONT portable sequencers for Blockchain traceability systems in Australia.

As a leader in the field, Dr. Nguyen spearheads the use of ONT long-read technology to scaffold genome assemblies in livestock, plants, protists, and insects. Her multidisciplinary expertise in molecular biology, advanced genomics, and animal sciences also empowers her to explore causative markers for commercial SNP arrays and identify significant DNA variants from low-coverage sequencing data sets.

Dr. Nguyen's exceptional achievements and expertise have been acknowledged through the prestigious ARC Industry Fellowship, recognising her as a promising early career researcher. Her work has significantly contributed to advancing genomic research in agriculture and has opened new avenues for utilising ONT sequencing technologies across diverse domains.

Availability

Dr Loan Nguyen is:
Available for supervision

Qualifications

  • Doctor of Philosophy, The University of Queensland

Works

Search Professor Loan Nguyen’s works on UQ eSpace

66 works between 2014 and 2025

1 - 20 of 66 works

2025

Journal Article

Genetic analysis of Ornithobacterium rhinotracheale isolates; an Australian perspective

Naseem, Muhammad Noman, Bisset, Sean William, Heng, Zi Ming, Nguyen, Loan To, Anwar, Arif, Scott, Peter, Blackall, Patrick J, Turni, Conny and Omaleki, Lida (2025). Genetic analysis of Ornithobacterium rhinotracheale isolates; an Australian perspective. Avian Pathology, 1-27. doi: 10.1080/03079457.2025.2552314

Genetic analysis of Ornithobacterium rhinotracheale isolates; an Australian perspective

2025

Journal Article

Proof-of-concept trial in mature bulls prophylactically and therapeutically vaccinated with an experimental whole-cell killed Tritrichomonas foetus vaccine

Santos, John Harvey M., Cavallaro, Antonino S., McCosker, Kieren D., McGowan, Michael R., Siddle, Hannah V., Nguyen, Loan T., Raza, Ali, Boe-Hansen, Gry B. and Tabor, Ala E. (2025). Proof-of-concept trial in mature bulls prophylactically and therapeutically vaccinated with an experimental whole-cell killed Tritrichomonas foetus vaccine. Parasitology, 1-33. doi: 10.1017/s0031182025100772

Proof-of-concept trial in mature bulls prophylactically and therapeutically vaccinated with an experimental whole-cell killed Tritrichomonas foetus vaccine

2025

Journal Article

Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing

Nguyen, Thi Dieu Thuy, Tran, Thi Binh Nguyen and Nguyen, Loan T. (2025). Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing. BMC Genomic Data, 26 (1) 42. doi: 10.1186/s12863-025-01331-4

Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing

2025

Journal Article

Potassium Bromide scattering simulation for improving phosphor-converting white LED performance

Anh, Nguyen Doan Quoc, Loan, Nguyen Thi Phuong, De, Pham Van and Lee, Hsiao-Yi (2025). Potassium Bromide scattering simulation for improving phosphor-converting white LED performance. Optoelectronics and Advanced Materials-Rapid Communications, 19 (7-8), 378-383.

Potassium Bromide scattering simulation for improving phosphor-converting white LED performance

2025

Journal Article

Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis

Chen, Ziming, Ong, Chian Teng, Nguyen, Loan To, Lamb, Harrison J., González-Recio, O., Gutiérrez-Rivas, M., Meale, Sarah J. and Ross, Elizabeth M. (2025). Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis. BMC Genomics, 26 (1) 504, 504. doi: 10.1186/s12864-025-11649-z

Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis

2025

Journal Article

Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologies

Banerjee, Priyanka, de Lima, Andressa Oliveira, Nguyen, Loan T. and Diniz, Wellison J. S. (2025). Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologies. Frontiers in Genetics, 16 1565301, 1-2. doi: 10.3389/fgene.2025.1565301

Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologies

2025

Journal Article

Scattering regulation using barium sulfate particles to achieve improved colour temperature uniformity of white LEDs

Hanh, N. T. M., Thai, N. L., Loan, N. T. P. and Lee, H. Y. (2025). Scattering regulation using barium sulfate particles to achieve improved colour temperature uniformity of white LEDs. Journal of Optoelectronics and Advanced Materials, 27 (1-2), 28-33.

Scattering regulation using barium sulfate particles to achieve improved colour temperature uniformity of white LEDs

2025

Journal Article

Systematic review of vaccine strategies against Tritrichomonas foetus infection in cattle: Insights, challenges, and prospects

Santos, John Harvey M., Boe‐Hansen, Gry B., Siddle, Hannah V., Nguyen, Loan T., Raza, Ali, McGowan, Michael, McCosker, Kieren D. and Tabor, Ala E. (2025). Systematic review of vaccine strategies against Tritrichomonas foetus infection in cattle: Insights, challenges, and prospects. Parasite Immunology, 47 (1) e70003, 1-23. doi: 10.1111/pim.70003

Systematic review of vaccine strategies against Tritrichomonas foetus infection in cattle: Insights, challenges, and prospects

2024

Journal Article

Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots

Dao, Van Hong Thi, Nguyen, Loan To, Do, Khanh Phuong, Nguyen, Vinh The, Van Nguyen, Hieu, Pham, Khanh Ngoc, Nguyen, Truong Xuan and Dinh, Son Truong (2024). Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots. BMC Genomic Data, 25 (1) 107, 107. doi: 10.1186/s12863-024-01291-1

Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots

2024

Journal Article

Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility

Mantilla Valdivieso, Emily F., Ross, Elizabeth M., Raza, Ali, Nguyen, Loan, Hayes, Ben J., Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2024). Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility. Scientific Reports, 14 (1) 4419, 1-14. doi: 10.1038/s41598-024-54577-w

Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility

2024

Conference Publication

Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattle

Tahir, Muhammad Sajid, Goddard, Mike, Hayes, Ben, Vander Jagt, Christy, Ross, Elizabeth, Forutan, Mehrnush, Nguyen, Loan, Mason, Brett, Van den Berg, Irene, Phyn, Claire, Meier, Susanne, Bruke, Chris and Chamberlain, Amanda (2024). Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattle. PAG Australia 2024, Perth, WA, Australia, 18 - 20 September 2024.

Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattle

2024

Journal Article

Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation

Ong, Chian Teng, Blackall, Patrick. J., Boe-Hansen, Gry B., deWet, Sharon, Hayes, Ben J., Indjein, Lea, Korolik, Victoria, Minchin, Catherine, Nguyen, Loan To, Nordin, Yusralimuna, Siddle, Hannah, Turni, Conny, Venus, Bronwyn, Westman, Mark E., Zhang, Zhetao and Tabor, Ala E. (2024). Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation. Frontiers in Microbiology, 15 1452564, 1452564. doi: 10.3389/fmicb.2024.1452564

Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation

2024

Conference Publication

Assessment of Ajwa date fruit impact on gut microbiota and metabolite composition

Madani, Khalil Saber H., Netzel, Michael E., Nguyen, Loan, Phan, Anh Dao Thi and Sultanbawa, Yasmina (2024). Assessment of Ajwa date fruit impact on gut microbiota and metabolite composition. NextGen Ag Symposium, St Lucia, QLD, Australia, 6 September 2024.

Assessment of Ajwa date fruit impact on gut microbiota and metabolite composition

2024

Journal Article

Stress-induced epigenetic effects driven by maternal lactation in dairy cattle: a comethylation network approach

López-Catalina, Adrián, Reverter, Antonio, Alexandre, Pamela A., Nguyen, Loan T. and González-Recio, Oscar (2024). Stress-induced epigenetic effects driven by maternal lactation in dairy cattle: a comethylation network approach. Epigenetics, 19 (1) 2381856, 2381856. doi: 10.1080/15592294.2024.2381856

Stress-induced epigenetic effects driven by maternal lactation in dairy cattle: a comethylation network approach

2024

Journal Article

Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis

Ong, Chian Teng, Mody, Karishma T., Cavallaro, Antonino S., Yan, Yakun, Nguyen, Loan T., Shao, Renfu, Mitter, Neena, Mahony, Timothy J. and Ross, Elizabeth M. (2024). Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis. International Journal of Molecular Sciences, 25 (14) 7824, 1-15. doi: 10.3390/ijms25147824

Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis

2024

Journal Article

Whole-genome sequence of Micrococcus sp. strain HOU01 isolated from potato root

Dao, Van Hong Thi, Nguyen, Loan To, Tran, Phuong Minh Thi, Nguyen, Truong Xuan, Le, Ha Hai Thanh and Dinh, Son Truong (2024). Whole-genome sequence of Micrococcus sp. strain HOU01 isolated from potato root. Microbiology Resource Announcements, 13 (6), e0026824. doi: 10.1128/mra.00268-24

Whole-genome sequence of Micrococcus sp. strain HOU01 isolated from potato root

2024

Journal Article

Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility

Forutan, Mehrnush, Engle, Bailey N., Chamberlain, Amanda J., Ross, Elizabeth M., Nguyen, Loan T., D’Occhio, Michael J., Snr, Alf Collins, Kho, Elise A., Fordyce, Geoffry, Speight, Shannon, Goddard, Michael E. and Hayes, Ben J. (2024). Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility. Communications Biology, 7 (1) 724, 724. doi: 10.1038/s42003-024-06403-2

Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility

2023

Journal Article

Use of continuous genotypes for genomic prediction in sugarcane

Yadav, Seema, Ross, Elizabeth M., Wei, Xianming, Liu, Shouye, Nguyen, Loan To, Powell, Owen, Hickey, Lee T., Deomano, Emily, Atkin, Felicity, Voss‐Fels, Kai P. and Hayes, Ben J. (2023). Use of continuous genotypes for genomic prediction in sugarcane. The Plant Genome, 17 (1) e20417, e20417. doi: 10.1002/tpg2.20417

Use of continuous genotypes for genomic prediction in sugarcane

2023

Journal Article

Imputation strategies for genomic prediction using nanopore sequencing

Lamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0

Imputation strategies for genomic prediction using nanopore sequencing

2023

Conference Publication

Protocol Modification for DNA Extraction from Human Faecal Samples

Madani, Khalil Saber H., Nguyen, Loan, Phan, Anh Dao Thi, Netzel, Michael E. and Sultanbawa, Yasmina (2023). Protocol Modification for DNA Extraction from Human Faecal Samples. Queensland Annual Chemistry Symposium (QACS), Brisbane, QLD, Australia, 24 November 2023.

Protocol Modification for DNA Extraction from Human Faecal Samples

Funding

Current funding

  • 2025 - 2026
    UQ AWARE - Dr Loan Nguyen
    UQ Amplify Women's Academic Research Equity
    Open grant
  • 2025 - 2028
    Improve genomic testing tools for fertility traits in beef cattle
    ARC Early Career Industry Fellowships
    Open grant
  • 2023 - 2025
    Harnessing the synbio potential of Australia's stingless bees, the first step
    Sugar Research Australia Limited
    Open grant
  • 2022 - 2026
    On-farm genomics: genomic solutions for Northern beef cattle management and breeding
    Meat & Livestock Australia
    Open grant

Past funding

  • 2021 - 2022
    DNA as the ultimate identifier in blockchain traceability systems
    Innovation Connections
    Open grant

Supervision

Availability

Dr Loan Nguyen is:
Available for supervision

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Supervision history

Current supervision

Completed supervision

Media

Enquiries

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communications@uq.edu.au