
Overview
Background
Dr. Nguyen is an expert in applying long-read Oxford Nanopore Sequencing Technologies (ONT) in agriculture, particularly livestock and other sectors. Her groundbreaking contributions include being the pioneer in sequencing the genomes of Brahman and Wagyu cattle, developing an innovative epigenetic clock for age prediction in cattle, and successfully implementing ONT portable sequencers for Blockchain traceability systems in Australia.
As a leader in the field, Dr. Nguyen spearheads the use of ONT long-read technology to scaffold genome assemblies in livestock, plants, protists, and insects. Her multidisciplinary expertise in molecular biology, advanced genomics, and animal sciences also empowers her to explore causative markers for commercial SNP arrays and identify significant DNA variants from low-coverage sequencing data sets.
Dr. Nguyen's exceptional achievements and expertise have been acknowledged through the prestigious ARC Industry Fellowship, recognising her as a promising early career researcher. Her work has significantly contributed to advancing genomic research in agriculture and has opened new avenues for utilising ONT sequencing technologies across diverse domains.
Availability
- Dr Loan Nguyen is:
- Available for supervision
Fields of research
Qualifications
- Doctor of Philosophy, The University of Queensland
Works
Search Professor Loan Nguyen’s works on UQ eSpace
2025
Journal Article
Genetic analysis of Ornithobacterium rhinotracheale isolates; an Australian perspective
Naseem, Muhammad Noman, Bisset, Sean William, Heng, Zi Ming, Nguyen, Loan To, Anwar, Arif, Scott, Peter, Blackall, Patrick J, Turni, Conny and Omaleki, Lida (2025). Genetic analysis of Ornithobacterium rhinotracheale isolates; an Australian perspective. Avian Pathology, 1-27. doi: 10.1080/03079457.2025.2552314
2025
Journal Article
Proof-of-concept trial in mature bulls prophylactically and therapeutically vaccinated with an experimental whole-cell killed Tritrichomonas foetus vaccine
Santos, John Harvey M., Cavallaro, Antonino S., McCosker, Kieren D., McGowan, Michael R., Siddle, Hannah V., Nguyen, Loan T., Raza, Ali, Boe-Hansen, Gry B. and Tabor, Ala E. (2025). Proof-of-concept trial in mature bulls prophylactically and therapeutically vaccinated with an experimental whole-cell killed Tritrichomonas foetus vaccine. Parasitology, 1-33. doi: 10.1017/s0031182025100772
2025
Journal Article
Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing
Nguyen, Thi Dieu Thuy, Tran, Thi Binh Nguyen and Nguyen, Loan T. (2025). Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing. BMC Genomic Data, 26 (1) 42. doi: 10.1186/s12863-025-01331-4
2025
Journal Article
Potassium Bromide scattering simulation for improving phosphor-converting white LED performance
Anh, Nguyen Doan Quoc, Loan, Nguyen Thi Phuong, De, Pham Van and Lee, Hsiao-Yi (2025). Potassium Bromide scattering simulation for improving phosphor-converting white LED performance. Optoelectronics and Advanced Materials-Rapid Communications, 19 (7-8), 378-383.
2025
Journal Article
Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis
Chen, Ziming, Ong, Chian Teng, Nguyen, Loan To, Lamb, Harrison J., González-Recio, O., Gutiérrez-Rivas, M., Meale, Sarah J. and Ross, Elizabeth M. (2025). Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis. BMC Genomics, 26 (1) 504, 504. doi: 10.1186/s12864-025-11649-z
2025
Journal Article
Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologies
Banerjee, Priyanka, de Lima, Andressa Oliveira, Nguyen, Loan T. and Diniz, Wellison J. S. (2025). Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologies. Frontiers in Genetics, 16 1565301, 1-2. doi: 10.3389/fgene.2025.1565301
2025
Journal Article
Scattering regulation using barium sulfate particles to achieve improved colour temperature uniformity of white LEDs
Hanh, N. T. M., Thai, N. L., Loan, N. T. P. and Lee, H. Y. (2025). Scattering regulation using barium sulfate particles to achieve improved colour temperature uniformity of white LEDs. Journal of Optoelectronics and Advanced Materials, 27 (1-2), 28-33.
2025
Journal Article
Systematic review of vaccine strategies against Tritrichomonas foetus infection in cattle: Insights, challenges, and prospects
Santos, John Harvey M., Boe‐Hansen, Gry B., Siddle, Hannah V., Nguyen, Loan T., Raza, Ali, McGowan, Michael, McCosker, Kieren D. and Tabor, Ala E. (2025). Systematic review of vaccine strategies against Tritrichomonas foetus infection in cattle: Insights, challenges, and prospects. Parasite Immunology, 47 (1) e70003, 1-23. doi: 10.1111/pim.70003
2024
Journal Article
Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots
Dao, Van Hong Thi, Nguyen, Loan To, Do, Khanh Phuong, Nguyen, Vinh The, Van Nguyen, Hieu, Pham, Khanh Ngoc, Nguyen, Truong Xuan and Dinh, Son Truong (2024). Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots. BMC Genomic Data, 25 (1) 107, 107. doi: 10.1186/s12863-024-01291-1
2024
Journal Article
Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility
Mantilla Valdivieso, Emily F., Ross, Elizabeth M., Raza, Ali, Nguyen, Loan, Hayes, Ben J., Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2024). Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility. Scientific Reports, 14 (1) 4419, 1-14. doi: 10.1038/s41598-024-54577-w
2024
Conference Publication
Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattle
Tahir, Muhammad Sajid, Goddard, Mike, Hayes, Ben, Vander Jagt, Christy, Ross, Elizabeth, Forutan, Mehrnush, Nguyen, Loan, Mason, Brett, Van den Berg, Irene, Phyn, Claire, Meier, Susanne, Bruke, Chris and Chamberlain, Amanda (2024). Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattle. PAG Australia 2024, Perth, WA, Australia, 18 - 20 September 2024.
2024
Journal Article
Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation
Ong, Chian Teng, Blackall, Patrick. J., Boe-Hansen, Gry B., deWet, Sharon, Hayes, Ben J., Indjein, Lea, Korolik, Victoria, Minchin, Catherine, Nguyen, Loan To, Nordin, Yusralimuna, Siddle, Hannah, Turni, Conny, Venus, Bronwyn, Westman, Mark E., Zhang, Zhetao and Tabor, Ala E. (2024). Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation. Frontiers in Microbiology, 15 1452564, 1452564. doi: 10.3389/fmicb.2024.1452564
2024
Conference Publication
Assessment of Ajwa date fruit impact on gut microbiota and metabolite composition
Madani, Khalil Saber H., Netzel, Michael E., Nguyen, Loan, Phan, Anh Dao Thi and Sultanbawa, Yasmina (2024). Assessment of Ajwa date fruit impact on gut microbiota and metabolite composition. NextGen Ag Symposium, St Lucia, QLD, Australia, 6 September 2024.
2024
Journal Article
Stress-induced epigenetic effects driven by maternal lactation in dairy cattle: a comethylation network approach
López-Catalina, Adrián, Reverter, Antonio, Alexandre, Pamela A., Nguyen, Loan T. and González-Recio, Oscar (2024). Stress-induced epigenetic effects driven by maternal lactation in dairy cattle: a comethylation network approach. Epigenetics, 19 (1) 2381856, 2381856. doi: 10.1080/15592294.2024.2381856
2024
Journal Article
Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis
Ong, Chian Teng, Mody, Karishma T., Cavallaro, Antonino S., Yan, Yakun, Nguyen, Loan T., Shao, Renfu, Mitter, Neena, Mahony, Timothy J. and Ross, Elizabeth M. (2024). Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis. International Journal of Molecular Sciences, 25 (14) 7824, 1-15. doi: 10.3390/ijms25147824
2024
Journal Article
Whole-genome sequence of Micrococcus sp. strain HOU01 isolated from potato root
Dao, Van Hong Thi, Nguyen, Loan To, Tran, Phuong Minh Thi, Nguyen, Truong Xuan, Le, Ha Hai Thanh and Dinh, Son Truong (2024). Whole-genome sequence of Micrococcus sp. strain HOU01 isolated from potato root. Microbiology Resource Announcements, 13 (6), e0026824. doi: 10.1128/mra.00268-24
2024
Journal Article
Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility
Forutan, Mehrnush, Engle, Bailey N., Chamberlain, Amanda J., Ross, Elizabeth M., Nguyen, Loan T., D’Occhio, Michael J., Snr, Alf Collins, Kho, Elise A., Fordyce, Geoffry, Speight, Shannon, Goddard, Michael E. and Hayes, Ben J. (2024). Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility. Communications Biology, 7 (1) 724, 724. doi: 10.1038/s42003-024-06403-2
2023
Journal Article
Use of continuous genotypes for genomic prediction in sugarcane
Yadav, Seema, Ross, Elizabeth M., Wei, Xianming, Liu, Shouye, Nguyen, Loan To, Powell, Owen, Hickey, Lee T., Deomano, Emily, Atkin, Felicity, Voss‐Fels, Kai P. and Hayes, Ben J. (2023). Use of continuous genotypes for genomic prediction in sugarcane. The Plant Genome, 17 (1) e20417, e20417. doi: 10.1002/tpg2.20417
2023
Journal Article
Imputation strategies for genomic prediction using nanopore sequencing
Lamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0
2023
Conference Publication
Protocol Modification for DNA Extraction from Human Faecal Samples
Madani, Khalil Saber H., Nguyen, Loan, Phan, Anh Dao Thi, Netzel, Michael E. and Sultanbawa, Yasmina (2023). Protocol Modification for DNA Extraction from Human Faecal Samples. Queensland Annual Chemistry Symposium (QACS), Brisbane, QLD, Australia, 24 November 2023.
Supervision
Availability
- Dr Loan Nguyen is:
- Available for supervision
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Supervision history
Current supervision
-
Doctor Philosophy
Understanding the genomic variation of methane producing ruminants
Associate Advisor
Other advisors: Dr Seema Yadav, Dr Elizabeth Ross
-
Doctor Philosophy
Developing genomic resources to enable better breeding decisions for Rufous bettongs, Aepyprymnus rufescens.
Associate Advisor
Other advisors: Dr Nick Hudson
-
Doctor Philosophy
Stingless bee enzymes for biotransformation of cane sugar to a low GI sugar
Associate Advisor
Other advisors: Emerita Professor Mary Fletcher, Dr Natasha Hungerford
-
Doctor Philosophy
Bovine Immunity from Novel Protozoan Vaccines
Associate Advisor
Other advisors: Dr Hannah Siddle, Associate Professor Gry Boe-Hansen, Professor Ala Tabor
-
Doctor Philosophy
Assessing the effect of date fruit (Phoenix dactylifera L.) on human gut microbiota and metabolite production: an in vitro fermentation study
Associate Advisor
Other advisors: Dr Michael Netzel, Professor Yasmina Sultanbawa
Completed supervision
-
2023
Doctor Philosophy
The cellular and molecular foundations of antibody response kinetics and affinity maturation in giant grouper (Epinephelus lanceolatus)
Associate Advisor
Other advisors: Professor Andrew Barnes
Media
Enquiries
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