Dr Nyoman Kurniawan
Dr

Nyoman Kurniawan

Email: 
Phone: 
+61 7 336 59737

Background

Dr Nyoman Kurniawan is a Senior Research Fellow in the Centre for Advanced Imaging and the Facility Manager for Preclincal 16.4T Microimaging 9.4T MRI scanners.

Dr Kurniawan’s research areas are:

  • Diffusion magnetic resonance imaging of mouse neuroanatomy, with view to study neurological disease model, including:
    • developmental abnormalities
    • spinal cord diseases
  • Development of 3D mouse brain, human spinal cord and cephalopod brain atlases using high resolution structural and diffusion MRI
  • Development of MR methods for nephron imaging
  • Application of MRI for agriculture imaging

Availability

Dr Nyoman Kurniawan is:
Available for supervision
Media expert

Fields of research

Biomedical engineering Neurosciences

Qualifications

  • Bachelor of Science, The University of Queensland
  • Bachelor (Honours) of Science (Advanced), The University of Queensland
  • Doctor of Philosophy, The University of Queensland

Research interests

  • Spinal cord MRI

    Using MRI to study degeneration and recovery in animal models of MS (EAE) and translation to clinical settings.

  • Kidney imaging

    Development of new MRI methods to image nephrons

  • Development of structural connectome for animal model

    Using diffusion MRI and fibre tracking to analyse brain wiring in animal models (rodents, fish, chepalopods)

  • Development of MRI methods for agriculture imaging

    Using MRI to characterise fruit maturation/ripening and root responses in crops.

Research impacts

Dr Kurniawan research focus is development of new MRI approaches for characterising animal models and ex vivo tissue specimens with the aim of relating the MRI signal to underlying tissue microstructures and processes. Insights gained with this approach have the potential to translate into improved use of MRI in humans. For example, he is working with clinicians at the Jamieson Trauma Institute to develop diffusion methods to measure brachial plexus injury.

Dr Kurniawan has a number of national and international collaborations, in the area of tumour microimaging (University of Sydney); multimodal MR imaging of Alzheimer brain (University of Southern California, USA), developing human spinal cord atlas (Polytechnique Montreal, Canada), and nephron imaging (Monash and University of Nottingham, UK).

Dr Kurniawan also works tangentialy in the applications of MRI to characterise agricultural products. He has been working with Uniquely Australian Foods at QAFFI, using MRI to characterise native fruit maturation and ripening process for commercialisation. Recently, he has obtained research infrastructure funding to establish Agriculture MRI facility at the Gatton Campus.

Search Professor Nyoman Kurniawan’s works on UQ eSpace

148 works between 1999 and 2024
All (148) Journal Article (101) Book Chapter (4) Conference Publication (35) Other Outputs (8)

21 - 40 of 148 works

2021

Journal Article

Generic acquisition protocol for quantitative MRI of the spinal cord

Cohen-Adad, Julien, Alonso-Ortiz, Eva, Abramovic, Mihael, Arneitz, Carina, Atcheson, Nicole, Barlow, Laura, Barry, Robert L., Barth, Markus, Battiston, Marco, Büchel, Christian, Budde, Matthew, Callot, Virginie, Combes, Anna J. E., De Leener, Benjamin, Descoteaux, Maxime, de Sousa, Paulo Loureiro, Dostál, Marek, Doyon, Julien, Dvorak, Adam, Eippert, Falk, Epperson, Karla R., Epperson, Kevin S., Freund, Patrick, Finsterbusch, Jürgen, Foias, Alexandru, Fratini, Michela, Fukunaga, Issei, Wheeler-Kingshott, Claudia A. M. Gandini, Germani, Giancarlo ... Xu, Junqian (2021). Generic acquisition protocol for quantitative MRI of the spinal cord. Nature Protocols, 16 (10), 4611-4632. doi: 10.1038/s41596-021-00588-0

Generic acquisition protocol for quantitative MRI of the spinal cord

2021

Journal Article

Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype

Kojic, Marija, Gawda, Tomasz, Gaik, Monika, Begg, Alexander, Salerno-Kochan, Anna, Kurniawan, Nyoman D., Jones, Alun, Drożdżyk, Katarzyna, Kościelniak, Anna, Chramiec-Głąbik, Andrzej, Hediyeh-Zadeh, Soroor, Kasherman, Maria, Shim, Woo Jun, Sinniah, Enakshi, Genovesi, Laura A., Abrahamsen, Rannvá K., Fenger, Christina D., Madsen, Camilla G., Cohen, Julie S., Fatemi, Ali, Stark, Zornitza, Lunke, Sebastian, Lee, Joy, Hansen, Jonas K., Boxill, Martin F., Keren, Boris, Marey, Isabelle, Saenz, Margarita S., Brown, Kathleen ... Wainwright, Brandon J. (2021). Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype. Nature Communications, 12 (1) 2678, 2678. doi: 10.1038/s41467-021-22888-5

Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype

2021

Journal Article

Chitosan nanococktails containing both ceria and superparamagnetic iron oxide nanoparticles for reactive oxygen species-related theranostics

Wu, Yuao, Zhang, Run, Tran, Huong D. N., Kurniawan, Nyoman D., Moonshi, Shehzahdi S., Whittaker, Andrew K. and Ta, Hang T. (2021). Chitosan nanococktails containing both ceria and superparamagnetic iron oxide nanoparticles for reactive oxygen species-related theranostics. ACS Applied Nano Materials, 4 (4) acsanm.1c00141, 3604-3618. doi: 10.1021/acsanm.1c00141

Chitosan nanococktails containing both ceria and superparamagnetic iron oxide nanoparticles for reactive oxygen species-related theranostics

2021

Journal Article

Homologous laminar organization of the mouse and human subiculum

Bienkowski, Michael S., Sepehrband, Farshid, Kurniawan, Nyoman D., Stanis, Jim, Korobkova, Laura, Khanjani, Neda, Clark, Kristi, Hintiryan, Houri, Miller, Carol A. and Dong, Hong-Wei (2021). Homologous laminar organization of the mouse and human subiculum. Scientific Reports, 11 (1) 3729, 3729. doi: 10.1038/s41598-021-81362-w

Homologous laminar organization of the mouse and human subiculum

2021

Journal Article

Tuning the thermoresponsive properties of PEG-based fluorinated polymers and stimuli responsive drug release for switchable 19F magnetic resonance imaging

Usman, Adil, Zhang, Cheng, Zhao, Jiacheng, Peng, Hui, Kurniawan, Nyoman D., Fu, Changkui, Hill, David J. T. and Whittaker, Andrew K. (2021). Tuning the thermoresponsive properties of PEG-based fluorinated polymers and stimuli responsive drug release for switchable 19F magnetic resonance imaging. Polymer Chemistry, 12 (38), 5438-5448. doi: 10.1039/d1py00602a

Tuning the thermoresponsive properties of PEG-based fluorinated polymers and stimuli responsive drug release for switchable 19F magnetic resonance imaging

2020

Journal Article

Abnormal behavior and cortical connectivity deficits in mice lacking Usp9x

Kasherman, Maria A., Currey, Laura, Kurniawan, Nyoman D., Zalucki, Oressia, Vega, Michelle Sanchez, Jolly, Lachlan A., Burne, Thomas H. J., Wood, Stephen A. and Piper, Michael (2020). Abnormal behavior and cortical connectivity deficits in mice lacking Usp9x. Cerebral Cortex, 31 (3), 1763-1775. doi: 10.1093/cercor/bhaa324

Abnormal behavior and cortical connectivity deficits in mice lacking Usp9x

2020

Journal Article

Comparison between 2D and 3D MEDIC for human cervical spinal cord MRI at 3T : human cervical spinal cord MRI using MEDIC

Asiri, Abdullah, Dimpudus, Franky, Atcheson, Nicole, Al-Najjar, Aiman, McMahon, Katie and Kurniawan, Nyoman D. (2020). Comparison between 2D and 3D MEDIC for human cervical spinal cord MRI at 3T : human cervical spinal cord MRI using MEDIC. Journal of Medical Radiation Sciences, 68 (1), 4-12. doi: 10.1002/jmrs.433

Comparison between 2D and 3D MEDIC for human cervical spinal cord MRI at 3T : human cervical spinal cord MRI using MEDIC

2020

Journal Article

GABAa receptor density alterations revealed in a mouse model of early moderate prenatal ethanol exposure using [18F]AH114726

Nguyen, Van T., Bhalla, Rajiv, Cowin, Gary, Stimson, Damion H.R., Song, Xin, Chong, Suyinn, Jackson, Alexander, Trigg, William J., Tieng, Quang M., Mardon, Karine, Galloway, Graham J. and Kurniawan, Nyoman D. (2020). GABAa receptor density alterations revealed in a mouse model of early moderate prenatal ethanol exposure using [18F]AH114726. Nuclear Medicine and Biology, 88-89, 44-51. doi: 10.1016/j.nucmedbio.2020.07.005

GABAa receptor density alterations revealed in a mouse model of early moderate prenatal ethanol exposure using [18F]AH114726

2020

Journal Article

Serial MRI studies over 12 months using manual and atlas-based region of interest in patients with amyotrophic lateral sclerosis

Alruwaili, Ashwag R., Pannek, Kerstin, Henderson, Robert D., Gray, Marcus, Kurniawan, Nyoman D. and McCombe, Pamela A. (2020). Serial MRI studies over 12 months using manual and atlas-based region of interest in patients with amyotrophic lateral sclerosis. BMC Medical Imaging, 20 (1) 90, 90. doi: 10.1186/s12880-020-00489-w

Serial MRI studies over 12 months using manual and atlas-based region of interest in patients with amyotrophic lateral sclerosis

2020

Journal Article

Hexarelin targets neuroinflammatory pathways to preserve cardiac morphology and function in a mouse model of myocardial ischemia-reperfusion

McDonald, H., Peart, J., Kurniawan, N.D., Galloway, G., Royce, S.G., Samuel, C.S. and Chen, C. (2020). Hexarelin targets neuroinflammatory pathways to preserve cardiac morphology and function in a mouse model of myocardial ischemia-reperfusion. Biomedicine and Pharmacotherapy, 127 110165, 110165. doi: 10.1016/j.biopha.2020.110165

Hexarelin targets neuroinflammatory pathways to preserve cardiac morphology and function in a mouse model of myocardial ischemia-reperfusion

2020

Journal Article

Toward an MRI-based mesoscale connectome of the squid brain

Chung, Wen-Sung, Kurniawan, Nyoman D. and Marshall, N. Justin (2020). Toward an MRI-based mesoscale connectome of the squid brain. iScience, 23 (1) 100816, 100816. doi: 10.1016/j.isci.2019.100816

Toward an MRI-based mesoscale connectome of the squid brain

2020

Journal Article

Magnetic Resonance Imaging and Micro-Computed Tomography reveal brain morphological abnormalities in a mouse model of early moderate prenatal ethanol exposure

Nguyen, Van T., Tieng, Quang M., Mardon, Karine, Zhang, Christine, Chong, Suyinn, Galloway, Graham J. and Kurniawan, Nyoman D. (2020). Magnetic Resonance Imaging and Micro-Computed Tomography reveal brain morphological abnormalities in a mouse model of early moderate prenatal ethanol exposure. Neurotoxicology and Teratology, 77 106849, 106849. doi: 10.1016/j.ntt.2019.106849

Magnetic Resonance Imaging and Micro-Computed Tomography reveal brain morphological abnormalities in a mouse model of early moderate prenatal ethanol exposure

2019

Journal Article

The p75 neurotrophin receptor is required for the survival of neuronal progenitors and normal formation of the basal forebrain, striatum, thalamus and neocortex

Meier, Sonja, Alfonsi, Fabienne, Kurniawan, Nyoman D., Milne, Michael R., Kasherman, Maria A., Delogu, Alessio, Piper, Michael and Coulson, Elizabeth J. (2019). The p75 neurotrophin receptor is required for the survival of neuronal progenitors and normal formation of the basal forebrain, striatum, thalamus and neocortex. Development, 146 (18) dev181933, dev.181933. doi: 10.1242/dev.181933

The p75 neurotrophin receptor is required for the survival of neuronal progenitors and normal formation of the basal forebrain, striatum, thalamus and neocortex

2019

Journal Article

Diffusion magnetic resonance imaging unveils the spatiotemporal microstructural gray matter changes following injury in the rodent brain

Soni, Neha, Mohamed, Abdalla Z., Kurniawan, Nyoman D., Borges, Karin and Nasrallah, Fatima (2019). Diffusion magnetic resonance imaging unveils the spatiotemporal microstructural gray matter changes following injury in the rodent brain. Journal of Neurotrauma, 36 (8), 1306-1317. doi: 10.1089/neu.2018.5972

Diffusion magnetic resonance imaging unveils the spatiotemporal microstructural gray matter changes following injury in the rodent brain

2019

Journal Article

Tract integrity in amyotrophic lateral sclerosis: 6–month evaluation using MR diffusion tensor imaging

Alruwaili, Ashwag R., Pannek, Kerstin, Henderson, Robert D., Gray, Marcus, Kurniawan, Nyoman D. and McCombe, Pamela A. (2019). Tract integrity in amyotrophic lateral sclerosis: 6–month evaluation using MR diffusion tensor imaging. BMC Medical Imaging, 19 (1) 19, 19. doi: 10.1186/s12880-019-0319-3

Tract integrity in amyotrophic lateral sclerosis: 6–month evaluation using MR diffusion tensor imaging

2019

Journal Article

Adult vitamin D deficiency disrupts hippocampal-dependent learning and structural brain connectivity in BALB/c mice

Al-Amin, Md. Mamun, Sullivan, Robert K. P., Kurniawan, Nyoman D. and Burne, Thomas H. J. (2019). Adult vitamin D deficiency disrupts hippocampal-dependent learning and structural brain connectivity in BALB/c mice. Brain Structure and Function, 224 (3), 1315-1329. doi: 10.1007/s00429-019-01840-w

Adult vitamin D deficiency disrupts hippocampal-dependent learning and structural brain connectivity in BALB/c mice

2019

Conference Publication

Coagulating colubrids: evolutionary, pathophysiological and biodiscovery implications of venom variations between Dispholidus typus and Thelotornis mossambicanus

Debono, Jordan, Dobson, James, Casewell, Nicholas R., Romilio, Anthony, Li, Bin, Kurniawan, Nyoman, Mardon, Karine, Weisbecker, Vera, Nouwens, Amanda, Kwok, Hang Fai and Fry, Bryan G. (2019). Coagulating colubrids: evolutionary, pathophysiological and biodiscovery implications of venom variations between Dispholidus typus and Thelotornis mossambicanus. 19th World Congress of the International-Society-on-Toxinology (IST) / 11th Asia Pacific Congress of the International-Society-on-Toxinology (IST) / 13th Chinese Conference on Toxins and Medical Applications, Haikou, Peoples Republic of China, 24-31 October 2017. Oxford, United Kingdom: Elsevier. doi: 10.1016/j.toxicon.2018.10.144

Coagulating colubrids: evolutionary, pathophysiological and biodiscovery implications of venom variations between Dispholidus typus and Thelotornis mossambicanus

2018

Journal Article

The 2018 correlative microscopy techniques roadmap

Ando, Toshio, Bhamidimarri, Satya Prathyusha, Brending, Niklas, Colin-York, H., Collinson, Lucy, De Jonge, Niels, de Pablo, P. J., Debroye, Elke, Eggeling, Christian, Franck, Christian, Fritzsche, Marco, Gerritsen, Hans, Giepmans, Ben N. G., Grunewald, Kay, Hofkens, Johan, Hoogenboom, Jacob P., Janssen, Kris P. F., Kaufman, Rainer, Klumpermann, Judith, Kurniawan, Nyoman, Kusch, Jana, Liv, Nalan, Parekh, Viha, Peckys, Diana B., Rehfeldt, Florian, Reutens, David C., Roeffaers, Maarten B. J., Salditt, Tim, Schaap, Iwan A. T. ... Zifarelli, Giovanni (2018). The 2018 correlative microscopy techniques roadmap. Journal of Physics D: Applied Physics, 51 (44) 443001, 443001. doi: 10.1088/1361-6463/aad055

The 2018 correlative microscopy techniques roadmap

2018

Journal Article

Heterozygosity for Nuclear Factor One X in mice models features of Malan syndrome

Oishi, Sabrina, Harkins, Danyon, Kurniawan, Nyoman D., Kasherman, Maria, Harris, Lachlan, Zalucki, Oressia, Gronostajski, Richard M., Burne, Thomas H.J. and Piper, Michael (2018). Heterozygosity for Nuclear Factor One X in mice models features of Malan syndrome. EBioMedicine, 39, 388-400. doi: 10.1016/j.ebiom.2018.11.044

Heterozygosity for Nuclear Factor One X in mice models features of Malan syndrome

2018

Journal Article

NMR structure of µ-conotoxin GIIIC: Leucine 18 induces local repacking of the N-terminus resulting in reduced Nav channel potency

Harvey, Peta J., Kurniawan, Nyoman D., Finol-Urdaneta, Rocio K., McArthur, Jeffrey R., Van Lysebetten, Dorien, Dash, Thomas S., Hill, Justine M., Adams, David J., Durek, Thomas and Craik, David J. (2018). NMR structure of µ-conotoxin GIIIC: Leucine 18 induces local repacking of the N-terminus resulting in reduced Nav channel potency. Molecules, 23 (10) molecules23102715, 2715. doi: 10.3390/molecules23102715

NMR structure of µ-conotoxin GIIIC: Leucine 18 induces local repacking of the N-terminus resulting in reduced Nav channel potency

Current funding

  • 2022 - 2025
    The mind and brain of an octopus: smart supercharged-snail
    The Australia and Pacific Science Foundation
    Open grant
  • 2022 - 2025
    Advancing the visualisation and quantification of nephrons with MRI
    ARC Discovery Projects
    Open grant

Past funding

  • 2019
    Dissolution DNP Hyperpolariser
    UQ Research Facilities Infrastructure Grants
    Open grant
  • 2018
    Biomolecular Imager and microscope for preclinical radiopharmaceutical development
    UQ Major Equipment and Infrastructure
    Open grant
  • 2014 - 2017
    Targeting the complement activation fragment C5a to improve the outcome from spinal cord injury
    NHMRC Project Grant
    Open grant
  • 2013 - 2014
    Epigenetic and neurobehavioural changes in a new mouse model of foetal alcohol spectrum disorders
    NHMRC Project Grant
    Open grant
  • 2012 - 2013
    Epigenetic and neurobehavioural changes in a new mouse model of foetal alcohol spectrum disorders (NHMRC Project Grant administered by MMRI)
    Mater Medical Research Institute Limited
    Open grant
  • 2012 - 2016
    Improving cancer management by direct detection with diffusion-weighted magnetic resonance imaging (NHMRC Project Grant administered by the University of Sydney)
    University of Sydney
    Open grant
  • 2011 - 2015
    A population-bases atlas of the zebrafish brain for quantitative phenotypic comparisons of disease models
    United States National Institutes of Health
    Open grant
  • 2011 - 2013
    ResTeach 2011 0.2 FTE Centre for Advanced Imaging
    UQ ResTeach
    Open grant
  • 2005 - 2006
    Generation of Annexin-V-DTPA/FITC as a novel contrast agent to visualize apoptotic cells
    UQ New Staff Research Start-Up Fund
    Open grant

Availability

Dr Nyoman Kurniawan is:
Available for supervision

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Available projects

  • Developing novel methods of kidney MRI acquisition and image analysis using artificial intelligence

    Nephrons are the basic functional unit of the kidney, an organ with a central role in maintaining homeostasis in the body. The number of nephrons in the kidneys and their microstructure reflect the success of renal development and the trajectory of renal health through life. Low nephron number increases the risk of chronic kidney disease, hypertension and cardiovascular disease.

    Current methods for nephron quantitation are limited to ex vivo methods which are labour intensive, affected by shrinkage or use contrast agents. Magnetic Resonance Imaging (MRI) has strong potential to characterise kidney microstructures, but in vivo it suffers from low image resolution and motion artefacts. This PhD project aims to develop novel methods for kidney MR image acquisitions and analyses using artificial intelligence (such as Deep Learning and super resolution methods) to allow characterisation of key components of nephrons, the glomeruli and tubules. It is expected that these new methods will play important roles in future kidney research and contribute to reducing Australia’s epidemic of chronic kidney disease.

    This is an opportunity to work with researchers at the Centre for Advanced Imaging, a leading imaging research facility in Australia, and The University of Queensland School of Information Technology and Electrical Engineering.

    The project will suit an enthusiastic and highly motivated student with a background in computer science, physics or engineering.

Supervision history

Current supervision

  • Doctor Philosophy

    Mapping human cervical spinal cord using high resolution structural and diffusion magnetic resonance imaging

    Principal Advisor

    Other advisors: Dr Gary Cowin

  • Doctor Philosophy

    Machine learning methods for visualisation and quantification of nephrons with MRI.

    Associate Advisor

    Other advisors: Dr Shakes Chandra

Completed supervision

Enquiries

Contact Dr Nyoman Kurniawan directly for media enquiries about:

  • Imaging - MRI
  • Magnetic Resonance Imaging
  • MRI

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