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2024 Journal Article In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak diseaseKaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan (2024). In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ, 12 e16949, 1-27. doi: 10.7717/peerj.16949 |
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2023 Journal Article Near-infrared spectroscopy and machine learning algorithms for rapid and non-invasive detection of TrichurisKariyawasam, Tharanga N., Ciocchetta, Silvia, Visendi, Paul, Soares Magalhães, Ricardo J., Smith, Maxine E., Giacomin, Paul R. and Sikulu-Lord, Maggy T. (2023). Near-infrared spectroscopy and machine learning algorithms for rapid and non-invasive detection of Trichuris. PLOS Neglected Tropical Diseases, 17 (11) e0011695, e0011695. doi: 10.1371/journal.pntd.0011695 |
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2023 Journal Article Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectorsCampbell, Lahcen I., Nwezeobi, Joachim, van Brunschot, Sharon L., Kaweesi, Tadeo, Seal, Susan E., Swamy, Rekha A. R., Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M. N., Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023). Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24 (1) 408, 1-36. doi: 10.1186/s12864-023-09474-3 |
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2022 Journal Article First report of the detection of DENV1 in human blood plasma with near-infrared spectroscopyGoh, Brendon, Visendi, Paul, Lord, Anton R., Ciocchetta, Silvia, Liu, Wenjun and Sikulu-Lord, Maggy T. (2022). First report of the detection of DENV1 in human blood plasma with near-infrared spectroscopy. Viruses, 14 (10) 2248, 2248. doi: 10.3390/v14102248 |
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2022 Journal Article Characterization of transposable elements within the Bemisia tabaci species complexSicat, Juan Paolo A., Visendi, Paul, Sewe, Steven O., Bouvaine, Sophie and Seal, Susan E. (2022). Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (1) 12, 1-16. doi: 10.1186/s13100-022-00270-6 |
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2021 Journal Article Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbiontsBao, Xi-Yu, Yan, Jin-Yang, Yao, Ya-Lin, Wang, Yan-Bin, Visendi, Paul, Seal, Susan and Luan, Jun-Bo (2021). Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts. PLoS Pathogens, 17 (11) e1010120, 1-23. doi: 10.1371/journal.ppat.1010120 |
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2021 Journal Article Genetic diversity of whitefly (Bemisia spp.) on crop and uncultivated plants in Uganda: implications for the control of this devastating pest species complex in AfricaMugerwa, Habibu, Colvin, John, Alicai, Titus, Omongo, Christopher A., Kabaalu, Richard, Visendi, Paul, Sseruwagi, Peter and Seal, Susan E. (2021). Genetic diversity of whitefly (Bemisia spp.) on crop and uncultivated plants in Uganda: implications for the control of this devastating pest species complex in Africa. Journal of Pest Science, 94 (4), 1307-1330. doi: 10.1007/s10340-021-01355-6 |
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2020 Journal Article Molecular Evolution of the Glutathione S-Transferase Family in the Bemisia tabaci Species ComplexAidlin Harari, Ofer, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Seal, Susan, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020). Molecular Evolution of the Glutathione S-Transferase Family in the Bemisia tabaci Species Complex. Genome Biology and Evolution, 12 (2), 3857-3872. doi: 10.1093/gbe/evaa002 |
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2019 Journal Article Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencingSilva, Gonçalo, Bömer, Moritz, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. (2019). Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6) 167, 1-10. doi: 10.3390/plants8060167 |
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2019 Journal Article Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) virusesBömer, Moritz, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo, Kumar, P. Lava and Seal, Susan E. (2019). Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105, 54-66. doi: 10.1016/j.pmpp.2018.06.003 |
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2018 Journal Article Species-complex diversification and host-plant associations in Bemisia tabaci: a plant-defence, detoxification perspective revealed by RNA-Seq analysesMalka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon, Patel, Mitulkumar, Visendi, Paul, Mugerwa, Habibu, Seal, Susan, Colvin, John and Morin, Shai (2018). Species-complex diversification and host-plant associations in Bemisia tabaci: a plant-defence, detoxification perspective revealed by RNA-Seq analyses. Molecular Ecology, 27 (21), 4241-4256. doi: 10.1111/mec.14865 |
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2018 Journal Article Shifting the limits in wheat research and breeding using a fully annotated reference genomeAppels, Rudi, Eversole, Kellye, Feuillet, Catherine, Keller, Beat, Rogers, Jane, Stein, Nils, Pozniak, Curtis J., Choulet, Frédéric, Distelfeld, Assaf, Poland, Jesse, Ronen, Gil, Barad, Omer, Baruch, Kobi, Keeble-Gagnère, Gabriel, Mascher, Martin, Ben-Zvi, Gil, Josselin, Ambre-Aurore, Himmelbach, Axel, Balfourier, François, Gutierrez-Gonzalez, Juan, Hayden, Matthew, Koh, Chu Shin, Muehlbauer, Gary, Pasam, Raj K., Paux, Etienne, Rigault, Philippe, Tibbits, Josquin, Tiwari, Vijay, Spannagl, Manuel ... THE INTERNATIONAL WHEAT GENOME SEQUENCING CONSORTIUM (IWGSC) (2018). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361 (6403) eaar7191, 1-14. doi: 10.1126/science.aar7191 |
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2018 Journal Article Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnavirusesBömer, Moritz, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo and Seal, Susan E. (2018). Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology, 163 (2), 533-538. doi: 10.1007/s00705-017-3605-9 |
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2018 Journal Article A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a referenceChan, Chon-Kit Kenneth, Rosic, Nedeljka, Lorenc, Michał T., Visendi, Paul, Lin, Meng, Kaniewska, Paulina, Ferguson, Brett J., Gresshoff, Peter M., Batley, Jacqueline and Edwards, David (2018). A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference. Functional and Integrative Genomics, 19 (2), 363-371. doi: 10.1007/s10142-018-0647-3 |
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2017 Journal Article The pangenome of hexaploid bread wheatMontenegro, Juan D. , Golicz, Agnieszka A. , Bayer, Philipp E. , Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Visendi, Paul, Lai, Kaitao, Dolezel, Jaroslav, Batley, Jacqueline and Edwards, David (2017). The pangenome of hexaploid bread wheat. Plant Journal, 90 (5), 1007-1013. doi: 10.1111/tpj.13515 |
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2016 Journal Article BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomesStankova, Helena, Hastie, Alex R., Chan, Saki, Vrana, Jan, Tulpova, Zuzana, Kubalakova, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Dolezel, Jaroslav and Simkova, Hana (2016). BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes. Plant Biotechnology Journal, 14 (7), 1523-1531. doi: 10.1111/pbi.12513 |
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2016 Journal Article An efficient approach to BAC based assembly of complex genomesVisendi, Paul, Berkman, Paul J., Hayashi, Satomi, Golicz, Agnieszka A., Bayer, Philipp E., Ruperao, Pradeep, Hurgobin, Bhavna, Montenegro, Juan, Chan, Chon-Kit Kenneth, Stankova, Helena, Batley, Jacqueline, Simkova, Hana, Dolezel, Jaroslav and Edwards, David (2016). An efficient approach to BAC based assembly of complex genomes. Plant Methods, 12 (1) 2, 2. doi: 10.1186/s13007-016-0107-9 |
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2016 Journal Article Development and validation of Thinopyrum elongatum–expressed molecular markers specific for the long arm of chromosome 7EGou, Lulu, Hattori, Jiro, Fedak, George, Balcerzak, Margaret, Sharpe, Andrew, Visendi, Paul, Edwards, David, Tinker, Nicholas, Wei, Yu-Ming, Chen, Guo-Yue and Ouellet, Thérèse (2016). Development and validation of Thinopyrum elongatum–expressed molecular markers specific for the long arm of chromosome 7E. Crop Science, 56 (1), 354-363. doi: 10.2135/cropsci2015.03.0184 |
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2015 Journal Article High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napusBayer, Philipp E, Ruperao, Pradeep, Mason, Annaliese S, Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K, Batley, Jacqueline and Edwards, David (2015). High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 (6), 1039-1047. doi: 10.1007/s00122-015-2488-y |
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2015 Journal Article Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheatLai, Kaitao, Lorenc, Michael T., Lee, Hong Ching, Berkman, Paul J., Bayer, Philipp Emanuel, Visendi, Paul, Ruperao, Pradeep, Fitzgerald, Timothy L., Zander, Manuel, Chan, Chon-Kit Kenneth, Manoli, Sahana, Stiller, Jiri, Batley, Jacqueline and Edwards, David (2015). Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat. Plant Biotechnology Journal, 13 (1), 97-104. doi: 10.1111/pbi.12240 |
