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2003 Journal Article Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptomeZavolan, M., Kondo, S., Schonbach, C., Adachi, J., Hume, D. A., Hayashizaki, Y., Gaasterland, T., RIKEN GER Grp and GLS Members (2003). Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome. Genome Research, 13 (6B), 1290-1300. doi: 10.1101/gr.1017303 |
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2003 Journal Article The molecular basis for the lack of immunostimulatory activity of vertebrate DNAStacey, Katryn J., Young, Greg R., Clark, Francis, Sester, David P., Roberts, Tara L., Naik, Shalin, Sweet, Matthew J. and Hume, David A. (2003). The molecular basis for the lack of immunostimulatory activity of vertebrate DNA. Journal of Immunology, 170 (7), 3614-3620. doi: 10.4049/jimmunol.170.7.3614 |
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2003 Journal Article A macrophage colony-stimulating factor receptor-green fluorescent protein transgene is expressed throughout the mononuclear phagocyte system of the mouseSasmono, R. T., Oceandy, D., Pollard, J. W., Tong, W., Pavli, P., Wainwright, B. J., Ostrowski, M. C., Himes, S. R. and Hume, D. A. (2003). A macrophage colony-stimulating factor receptor-green fluorescent protein transgene is expressed throughout the mononuclear phagocyte system of the mouse. Blood, 101 (3), 1155-1163. doi: 10.1182/blood-2002-02-1569 |
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2003 Journal Article CSF-1 as a regulator of macrophage activation and immune responsesSweet, MJ and Hume, DA (2003). CSF-1 as a regulator of macrophage activation and immune responses. Archivum Immunologiae Et Therapiae Experimentalis, 51 (3), 169-177. |
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2003 Journal Article Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collectionNumata, K., Kanai, A., Saito, R., Kondo, S., Adachi, J., Wilming, L. G., Hume, D. A., RIKEN GER Group,, GSL Members,, Hayashizaki, Y. and Tomita, M. (2003). Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection. Genome Research, 13 (6B), 1301-1306. doi: 10.1101/gr.1011603 |
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2003 Journal Article Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineageWells, C. A., Ravasi, T., Sultana, R., Yagi, K., Carninci, P., Bono, H., Faulkner, G. J., Okazaki, Y., Quackenbush, J., Hume, D. A., RIKEN GER Group,, GSL Members, and Lyons, P. A. (2003). Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage. Genome Research, 13 (6B), 1360-1365. doi: 10.1101/gr.1056103 |
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2003 Journal Article Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase geneWalsh, N. C., Cahill, M., Carninci, P., Kawai, J., Okazaki, Y., Hayashizaki, Y., Hume, D. A. and Cassady, A. I. (2003). Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene. Gene, 307 (1-2), 111-123. doi: 10.1016/S0378-1119(03)00449-9 |
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2003 Journal Article Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptomeRavasi, T., Huber, T. L., Zavolan, M., Forrest, A. R., Gaasterland, T., Grimmond, S. M., RIKEN GER Group,, GSL Members, and Hume, D. A. (2003). Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome. Genome Research, 13 (6B), 1430-1442. doi: 10.1101/gr.949803 |
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2003 Journal Article Development and evaluation of an automated annotation pipeline and cDNA annotation systemKasukawa, T., Furuno, M., Nikaido, I., Bono, H., Hume, D. A., Bult, C., Hill, D. P., Baldarelli, R., Gough, J., Kanapin, A., Matsuda, H., Schriml, L. M., Hayashizaki, Y., Okazaki, Y. and Quackenbush, J. (2003). Development and evaluation of an automated annotation pipeline and cDNA annotation system. Genome Research, 13 (6B), 1542-1551. doi: 10.1101/gr.992803 |
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2003 Journal Article Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptomeTajul Arifin, K., Teasdale, R. D., Ravasi, T., Hume, D. A., RIKEN GER Group,, GSL Members, and Mattick, J. S. (2003). Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome. Genome Reaserch, 13 (6B), 1416-1429. doi: 10.1101/gr.1015703 |
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2003 Journal Article The mouse secretome: functional classification of the proteins secreted into the extracellular environmentGrimmond, Sean M., Miranda, Kevin C., Yuan, Zheng, Davis, Melissa J., Hume, David A., Yagi, Ken, Tominaga, Naoko, Bono, Hidemasa, Hayashizaki, Yoshihide, Okazaki, Yasushi, RIKEN GER Group,, GSL Members, and Teasdale, Rohan D. (2003). The mouse secretome: functional classification of the proteins secreted into the extracellular environment. Genome Research, 13 (6B), 1350-1359. doi: 10.1101/gr.983703 |
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2002 Journal Article Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAsTeasdale, R. D., Hume, D. A., Yuan, Zheng and The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I & II Team (2002). Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature, 420 (6915), 563-573. doi: 10.1038/nature01266 |
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2002 Journal Article Gene complementation of airway epithelium in the cystic fibrosis mouse is necessary and sufficient to correct the pathogen clearance and inflammatory abnormalitiesOceandy, Delvac, McMorran, Brendan J., Smith, Stephen N., Schreiber, Rainer, Kunzelmann, Karl, Alton, Eric W. F. W., Hume, David A. and Wainwright, Brandon J. (2002). Gene complementation of airway epithelium in the cystic fibrosis mouse is necessary and sufficient to correct the pathogen clearance and inflammatory abnormalities. Human Molecular Genetics, 11 (9), 1059-1067. doi: 10.1093/hmg/11.9.1059 |
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2002 Journal Article NF-IL6 and HSF1 have mutually antagonistic effects on transcription in monocytic cellsXie, Y., Chen, C. M., Stevenson, M. A., Hume, D. A., Auron, P. E. and Calderwood, S. K. (2002). NF-IL6 and HSF1 have mutually antagonistic effects on transcription in monocytic cells. Biochemical And Biophysical Research Communications, 291 (4), 1071-1080. doi: 10.1006/bbrc.2002.6562 |
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2002 Journal Article Erratum: Generation of diversity in the innate immune system: Macrophage heterogeneity arises from gene-autonomous transcriptional probability of individual inducible genes (The Journal of Immunology (2002) 168 (44-50))Ravasi, Timothy, Wells, Christine, Forrest, Alistair, Underhill., David M., Wainwright, Brandon J., Aderem, Alan, Grimmond, Sean and Hume, David A. (2002). Erratum: Generation of diversity in the innate immune system: Macrophage heterogeneity arises from gene-autonomous transcriptional probability of individual inducible genes (The Journal of Immunology (2002) 168 (44-50)). Journal of Immunology, 168 (3) |
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2002 Journal Article Generation of Diversity in the Innate Immune System: Macrophage Heterogeneity Arises From Gene-Autonomous Transcriptional Probability of Individual Inducible GenesRavasi, T., Wells, C., Forrest, A., Walsh, N., Underhill, D. M., Wainwright, B. J., Aderem, A., Grimmond, S. and Hume, D. A. (2002). Generation of Diversity in the Innate Immune System: Macrophage Heterogeneity Arises From Gene-Autonomous Transcriptional Probability of Individual Inducible Genes. Journal of Immunology, 168 (1), 44-50. doi: 10.4049/jimmunol.168.1.44 |
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2002 Journal Article The mononuclear phagocyte system revisitedHume, David A., Ross, Ian L., Himes, S. Roy, Sasmono, R. Tedjo, Wells, Christine A. and Ravasi, Timothy (2002). The mononuclear phagocyte system revisited. Journal of Leukocyte Biology, 72 (4), 621-627. doi: 10.1189/jlb.72.4.621 |
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2002 Journal Article Transcription factor complex formation and chromatin fine structure alterations at the murine c-fms (CSF-1 receptor) locus during maturation of myeloid precursor cellsTagoh, H., Himes, R., Clarke, D., Leenen, P. J. M., Riggs, A. D., Hume, D. and Bonifer, C. (2002). Transcription factor complex formation and chromatin fine structure alterations at the murine c-fms (CSF-1 receptor) locus during maturation of myeloid precursor cells. Genes and Development, 16 (13), 1721-1737. doi: 10.1101/gad.222002 |
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2002 Conference Publication Structural genomics of novel macrophage proteins associated with inflammatory disease and cancerListwan, P., Walsh, C. R., Ravasi, T., Wells, C. A., Cowieson, N. P., Hume, D. A., Martin, J. L. and Kobe, B. (2002). Structural genomics of novel macrophage proteins associated with inflammatory disease and cancer. International Conference on Structural Genomics, Berlin, 10-13 October, 2002. |
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2002 Journal Article The microphthalmia transcription factor and the related helix-loop-helix zipper factors TFE-3 and TFE-C collaborate to activate the tartrate-resistant acid phosphatase promoterMansky, K. C., Sulzbacher, S., Purdom, G., Nelsen, L., Hume, D. A., Rehli, M. and Ostrowski, M. C. (2002). The microphthalmia transcription factor and the related helix-loop-helix zipper factors TFE-3 and TFE-C collaborate to activate the tartrate-resistant acid phosphatase promoter. Journal of Leukocyte Biology, 71 (2), 304-310. doi: 10.1189/jlb.71.2.304 |
