
Overview
Availability
- Dr Thomas Shaw is:
- Available for supervision
- Media expert
Qualifications
- Doctor of Philosophy, The University of Queensland
Works
Search Professor Thomas Shaw’s works on UQ eSpace
2025
Journal Article
Factors associated with true-positive and false-positive diagnoses of behavioural variant frontotemporal dementia in 100 consecutive referrals from specialist physicians
Flavell, Joshua, Ahern, Emily G. M., Logan, Benignus, Shaw, Thomas B., Adam, Robert J., McElligott, Caitlin A. T. and Nestor, Peter J. (2025). Factors associated with true-positive and false-positive diagnoses of behavioural variant frontotemporal dementia in 100 consecutive referrals from specialist physicians. European Journal of Neurology, 32 (1) e70036, e70036-1. doi: 10.1111/ene.70036
2024
Journal Article
A (sub)field guide to quality control in hippocampal subfield segmentation on high‐resolution <scp>T<sub>2</sub></scp>‐weighted <scp>MRI</scp>
Canada, Kelsey L., Mazloum‐Farzaghi, Negar, Rådman, Gustaf, Adams, Jenna N., Bakker, Arnold, Baumeister, Hannah, Berron, David, Bocchetta, Martina, Carr, Valerie A., Dalton, Marshall A., de Flores, Robin, Keresztes, Attila, La Joie, Renaud, Mueller, Susanne G., Raz, Naftali, Santini, Tales, Shaw, Thomas, Stark, Craig E. L., Tran, Tammy T., Wang, Lei, Wisse, Laura E. M., Wuestefeld, Anika, Yushkevich, Paul A., Olsen, Rosanna K., Daugherty, Ana M. and the Hippocampal Subfields Group (2024). A (sub)field guide to quality control in hippocampal subfield segmentation on high‐resolution T2‐weighted MRI. Human Brain Mapping, 45 (15) e70004, e70004. doi: 10.1002/hbm.70004
2024
Journal Article
VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography data
Xu, Marshall, Ribeiro, Fernanda L., Barth, Markus, Bernier, Michaël, Bollmann, Steffen, Chatterjee, Soumick, Cognolato, Francesco, Gulban, Omer F., Itkyal, Vaibhavi, Liu, Siyu, Mattern, Hendrik, Polimeni, Jonathan R., Shaw, Thomas B., Speck, Oliver and Bollmann, Saskia (2024). VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography data. Aperture Neuro, 4, 1-13. doi: 10.52294/001c.123217
2024
Journal Article
Long-term improvement in hippocampal-dependent learning ability in healthy, aged individuals following high intensity interval training
Blackmore, Daniel G., Schaumberg, Mia A., Ziaei, Maryam, Belford, Samuel, To, Xuan Vinh, O’Keeffe, Imogen, Bernard, Anne, Mitchell, Jules, Hume, Emily, Rose, Grace L., Shaw, Thomas, York, Ashley, Barth, Markus, Cooper, Elizabeth J., Skinner, Tina L., Nasrallah, Fatima, Riek, Stephan and Bartlett, Perry F. (2024). Long-term improvement in hippocampal-dependent learning ability in healthy, aged individuals following high intensity interval training. Aging and Disease. doi: 10.14336/AD.2024.0642
2024
Journal Article
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
Renton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (2), 804-808. doi: 10.1038/s41592-023-02145-x
2024
Journal Article
Neurochemical predictors of generalised learning induced by brain stimulation and training
Ehrhardt, Shane E., Wards, Yohan, Rideaux, Reuben, Marjańska, Małgorzata, Jin, Jin, Cloos, Martijn A., Deelchand, Dinesh K., Zöllner, Helge J., Saleh, Muhammad G., Hui, Steve C. N., Ali, Tonima, Shaw, Thomas B., Barth, Markus, Mattingley, Jason B., Filmer, Hannah L. and Dux, Paul E. (2024). Neurochemical predictors of generalised learning induced by brain stimulation and training. The Journal of Neuroscience, 44 (21) e1676232024, 1-15. doi: 10.1523/jneurosci.1676-23.2024
2024
Journal Article
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
Renton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (5), 804-808. doi: 10.1038/s41592-023-02145-x
2023
Journal Article
Individual differences in decision strategy relate to neurochemical excitability and cortical thickness
Filmer, Hannah L., Loughnan, Kathleen, Seeto, Jennifer X., Ballard, Timothy, Ehrhardt, Shane E., Shaw, Thomas, Wards, Yohan, Rideaux, Reuben, Leow, Li-Ann, Sewell, David and Dux, Paul E. (2023). Individual differences in decision strategy relate to neurochemical excitability and cortical thickness. The Journal of Neuroscience, 43 (42), 7006-7015. doi: 10.1523/jneurosci.1086-23.2023
2023
Journal Article
HumanBrainAtlas: an in vivo MRI dataset for detailed segmentations
Schira, Mark M., Isherwood, Zoey J., Kassem, Mustafa S., Barth, Markus, Shaw, Thomas B., Roberts, Michelle M. and Paxinos, George (2023). HumanBrainAtlas: an in vivo MRI dataset for detailed segmentations. Brain Structure and Function, 228 (8), 1-15. doi: 10.1007/s00429-023-02653-8
2023
Conference Publication
Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T
Chang, Jeryn, Steyn, Frederik, Ngo, Shyuan, Henderson, Robert, Guo, Christine, Bollmann, Steffen, Fripp, Jurgen, Barth, Markus and Shaw, Thomas (2023). Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T. Joint Annual Meeting ISMRM-ESMRMB & ISMRT 31st Annual Meeting, London, United Kingdom, 7-12 May 2022. Concord, CA United States: International Society for Magnetic Resonance in Medicine. doi: 10.58530/2022/3808
2022
Journal Article
Lower hypothalamic volume with lower BMI is associated with shorter survival in patients with ALS
Chang, Jeryn, Shaw, Thomas B., Holdom, Cory J., McCombe, Pamela A., Henderson, Robert D., Fripp, Jurgen, Barth, Markus, Guo, Christine C., Ngo, Shyuan T. and Steyn, Frederik J. (2022). Lower hypothalamic volume with lower BMI is associated with shorter survival in patients with ALS. European Journal of Neurology, 30 (1), 57-68. doi: 10.1111/ene.15589
2022
Journal Article
Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T
Chang, Jeryn, Steyn, Frederik, Ngo, Shyuan, Henderson, Robert, Guo, Christine, Bollmann, Steffen, Fripp, Jurgen, Barth, Markus and Shaw, Thomas (2022). Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T. Journal of Open Source Software, 7 (76), 4368. doi: 10.21105/joss.04368
2022
Journal Article
Enhanced semantic memory in a case of highly superior autobiographical memory
Ford, Lucy, Shaw, Thomas B., Mattingley, Jason B. and Robinson, Gail A. (2022). Enhanced semantic memory in a case of highly superior autobiographical memory. Cortex, 151, 1-14. doi: 10.1016/j.cortex.2022.02.007
2021
Journal Article
Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective
Levitis, Elizabeth, van Praag, Cassandra D Gould, Gau, Rémi, Heunis, Stephan, DuPre, Elizabeth, Kiar, Gregory, Bottenhorn, Katherine L, Glatard, Tristan, Nikolaidis, Aki, Whitaker, Kirstie Jane, Mancini, Matteo, Niso, Guiomar, Afyouni, Soroosh, Alonso-Ortiz, Eva, Appelhoff, Stefan, Arnatkeviciute, Aurina, Atay, Selim Melvin, Auer, Tibor, Baracchini, Giulia, Bayer, Johanna M M, Beauvais, Michael J S, Bijsterbosch, Janine D, Bilgin, Isil P, Bollmann, Saskia, Bollmann, Steffen, Botvinik-Nezer, Rotem, Bright, Molly G, Calhoun, Vince D, Chen, Xiao ... Maumet, Camille (2021). Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective. GigaScience, 10 (8) giab051. doi: 10.1093/gigascience/giab051
2021
Journal Article
Brainhack: Developing a culture of open, inclusive, community-driven neuroscience
Gau, Rémi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L., Bilgin, Isil P., Yang, Yu-Fang, Huntenburg, Julia M., Bayer, Johanna M.M., Bethlehem, Richard A.I., Rhoads, Shawn A., Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P., Huijser, Dorien C., Sandström, Malin S., Herholz, Peer, Nastase, Samuel A., Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael ... Zuo, Xi-Nian (2021). Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Neuron, 109 (11), 1769-1775. doi: 10.1016/j.neuron.2021.04.001
2021
Other Outputs
Computational in vivo tissue characterisation for multi-contrast high-resolution magnetic resonance imaging data
Shaw, Thomas (2021). Computational in vivo tissue characterisation for multi-contrast high-resolution magnetic resonance imaging data. PhD Thesis, Queensland Brain Institute, The University of Queensland. doi: 10.14264/ae6e21a
2020
Journal Article
Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI
Shaw, Thomas, York, Ashley, Ziaei, Maryam, Barth, Markus and Bollmann, Steffen (2020). Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI. NeuroImage, 218 116798, 116798. doi: 10.1016/j.neuroimage.2020.116798
2020
Journal Article
Towards optimising MRI characterisation of Tissue (TOMCAT) dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) data
Shaw, Thomas, York, Ashley, Barth, Markus and Bollmann, Steffen (2020). Towards optimising MRI characterisation of Tissue (TOMCAT) dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) data. Data in Brief, 32 106043, 106043. doi: 10.1016/j.dib.2020.106043
2020
Journal Article
Dissociable effects of tDCS polarity on latent decision processes are associated with individual differences in neurochemical concentrations and cortical morphology
Filmer, Hannah L., Ballard, Timothy, Ehrhardt, Shane E., Bollmann, Saskia, Shaw, Thomas B., Mattingley, Jason B. and Dux, Paul E. (2020). Dissociable effects of tDCS polarity on latent decision processes are associated with individual differences in neurochemical concentrations and cortical morphology. Neuropsychologia, 141 107433, 1-9. doi: 10.1016/j.neuropsychologia.2020.107433
2019
Journal Article
Non-linear realignment improves hippocampus subfield segmentation reliability
Shaw, Thomas B., Bollmann, Steffen, Atcheson, Nicole T., Strike, Lachlan T., Guo, Christine, McMahon, Katie L., Fripp, Jurgen, Wright, Margaret J., Salvado, Olivier and Barth, Markus (2019). Non-linear realignment improves hippocampus subfield segmentation reliability. NeuroImage, 203 116206, 116206. doi: 10.1016/j.neuroimage.2019.116206
Supervision
Availability
- Dr Thomas Shaw is:
- Available for supervision
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Supervision history
Current supervision
-
Doctor Philosophy
Magnetic Resonance Spectroscopy in Patients with Motor Neuron Disease at 3T and 7T
Associate Advisor
Other advisors: Professor Markus Barth
-
Doctor Philosophy
Use of bioinformatics to decode disease heterogeneity in motor neuron disease
Associate Advisor
Other advisors: Associate Professor Robert Henderson, Associate Professor Shyuan Ngo, Associate Professor Frederik Steyn
Media
Enquiries
Contact Dr Thomas Shaw directly for media enquiries about:
- 7T
- Motor Neurone Disease
- MRI
- neuroimaging
- Ultra-High Field
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