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Dr Thomas Shaw
Dr

Thomas Shaw

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Overview

Availability

Dr Thomas Shaw is:
Available for supervision
Media expert

Qualifications

  • Doctor of Philosophy, The University of Queensland

Works

Search Professor Thomas Shaw’s works on UQ eSpace

24 works between 2014 and 2025

1 - 20 of 24 works

2025

Journal Article

Factors associated with true-positive and false-positive diagnoses of behavioural variant frontotemporal dementia in 100 consecutive referrals from specialist physicians

Flavell, Joshua, Ahern, Emily G. M., Logan, Benignus, Shaw, Thomas B., Adam, Robert J., McElligott, Caitlin A. T. and Nestor, Peter J. (2025). Factors associated with true-positive and false-positive diagnoses of behavioural variant frontotemporal dementia in 100 consecutive referrals from specialist physicians. European Journal of Neurology, 32 (1) e70036, e70036-1. doi: 10.1111/ene.70036

Factors associated with true-positive and false-positive diagnoses of behavioural variant frontotemporal dementia in 100 consecutive referrals from specialist physicians

2024

Journal Article

A (sub)field guide to quality control in hippocampal subfield segmentation on high‐resolution <scp>T<sub>2</sub></scp>‐weighted <scp>MRI</scp>

Canada, Kelsey L., Mazloum‐Farzaghi, Negar, Rådman, Gustaf, Adams, Jenna N., Bakker, Arnold, Baumeister, Hannah, Berron, David, Bocchetta, Martina, Carr, Valerie A., Dalton, Marshall A., de Flores, Robin, Keresztes, Attila, La Joie, Renaud, Mueller, Susanne G., Raz, Naftali, Santini, Tales, Shaw, Thomas, Stark, Craig E. L., Tran, Tammy T., Wang, Lei, Wisse, Laura E. M., Wuestefeld, Anika, Yushkevich, Paul A., Olsen, Rosanna K., Daugherty, Ana M. and the Hippocampal Subfields Group (2024). A (sub)field guide to quality control in hippocampal subfield segmentation on high‐resolution T2‐weighted MRI. Human Brain Mapping, 45 (15) e70004, e70004. doi: 10.1002/hbm.70004

A (sub)field guide to quality control in hippocampal subfield segmentation on high‐resolution <scp>T<sub>2</sub></scp>‐weighted <scp>MRI</scp>

2024

Journal Article

VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography data

Xu, Marshall, Ribeiro, Fernanda L., Barth, Markus, Bernier, Michaël, Bollmann, Steffen, Chatterjee, Soumick, Cognolato, Francesco, Gulban, Omer F., Itkyal, Vaibhavi, Liu, Siyu, Mattern, Hendrik, Polimeni, Jonathan R., Shaw, Thomas B., Speck, Oliver and Bollmann, Saskia (2024). VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography data. Aperture Neuro, 4, 1-13. doi: 10.52294/001c.123217

VesselBoost: a Python toolbox for small blood vessel segmentation in human magnetic resonance angiography data

2024

Journal Article

Long-term improvement in hippocampal-dependent learning ability in healthy, aged individuals following high intensity interval training

Blackmore, Daniel G., Schaumberg, Mia A., Ziaei, Maryam, Belford, Samuel, To, Xuan Vinh, O’Keeffe, Imogen, Bernard, Anne, Mitchell, Jules, Hume, Emily, Rose, Grace L., Shaw, Thomas, York, Ashley, Barth, Markus, Cooper, Elizabeth J., Skinner, Tina L., Nasrallah, Fatima, Riek, Stephan and Bartlett, Perry F. (2024). Long-term improvement in hippocampal-dependent learning ability in healthy, aged individuals following high intensity interval training. Aging and Disease. doi: 10.14336/AD.2024.0642

Long-term improvement in hippocampal-dependent learning ability in healthy, aged individuals following high intensity interval training

2024

Journal Article

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

Renton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (2), 804-808. doi: 10.1038/s41592-023-02145-x

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

2024

Journal Article

Neurochemical predictors of generalised learning induced by brain stimulation and training

Ehrhardt, Shane E., Wards, Yohan, Rideaux, Reuben, Marjańska, Małgorzata, Jin, Jin, Cloos, Martijn A., Deelchand, Dinesh K., Zöllner, Helge J., Saleh, Muhammad G., Hui, Steve C. N., Ali, Tonima, Shaw, Thomas B., Barth, Markus, Mattingley, Jason B., Filmer, Hannah L. and Dux, Paul E. (2024). Neurochemical predictors of generalised learning induced by brain stimulation and training. The Journal of Neuroscience, 44 (21) e1676232024, 1-15. doi: 10.1523/jneurosci.1676-23.2024

Neurochemical predictors of generalised learning induced by brain stimulation and training

2024

Journal Article

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

Renton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (5), 804-808. doi: 10.1038/s41592-023-02145-x

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

2023

Journal Article

Individual differences in decision strategy relate to neurochemical excitability and cortical thickness

Filmer, Hannah L., Loughnan, Kathleen, Seeto, Jennifer X., Ballard, Timothy, Ehrhardt, Shane E., Shaw, Thomas, Wards, Yohan, Rideaux, Reuben, Leow, Li-Ann, Sewell, David and Dux, Paul E. (2023). Individual differences in decision strategy relate to neurochemical excitability and cortical thickness. The Journal of Neuroscience, 43 (42), 7006-7015. doi: 10.1523/jneurosci.1086-23.2023

Individual differences in decision strategy relate to neurochemical excitability and cortical thickness

2023

Journal Article

HumanBrainAtlas: an in vivo MRI dataset for detailed segmentations

Schira, Mark M., Isherwood, Zoey J., Kassem, Mustafa S., Barth, Markus, Shaw, Thomas B., Roberts, Michelle M. and Paxinos, George (2023). HumanBrainAtlas: an in vivo MRI dataset for detailed segmentations. Brain Structure and Function, 228 (8), 1-15. doi: 10.1007/s00429-023-02653-8

HumanBrainAtlas: an in vivo MRI dataset for detailed segmentations

2023

Conference Publication

Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T

Chang, Jeryn, Steyn, Frederik, Ngo, Shyuan, Henderson, Robert, Guo, Christine, Bollmann, Steffen, Fripp, Jurgen, Barth, Markus and Shaw, Thomas (2023). Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T. Joint Annual Meeting ISMRM-ESMRMB & ISMRT 31st Annual Meeting, London, United Kingdom, 7-12 May 2022. Concord, CA United States: International Society for Magnetic Resonance in Medicine. doi: 10.58530/2022/3808

Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T

2022

Journal Article

Lower hypothalamic volume with lower BMI is associated with shorter survival in patients with ALS

Chang, Jeryn, Shaw, Thomas B., Holdom, Cory J., McCombe, Pamela A., Henderson, Robert D., Fripp, Jurgen, Barth, Markus, Guo, Christine C., Ngo, Shyuan T. and Steyn, Frederik J. (2022). Lower hypothalamic volume with lower BMI is associated with shorter survival in patients with ALS. European Journal of Neurology, 30 (1), 57-68. doi: 10.1111/ene.15589

Lower hypothalamic volume with lower BMI is associated with shorter survival in patients with ALS

2022

Journal Article

Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T

Chang, Jeryn, Steyn, Frederik, Ngo, Shyuan, Henderson, Robert, Guo, Christine, Bollmann, Steffen, Fripp, Jurgen, Barth, Markus and Shaw, Thomas (2022). Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T. Journal of Open Source Software, 7 (76), 4368. doi: 10.21105/joss.04368

Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T

2022

Journal Article

Enhanced semantic memory in a case of highly superior autobiographical memory

Ford, Lucy, Shaw, Thomas B., Mattingley, Jason B. and Robinson, Gail A. (2022). Enhanced semantic memory in a case of highly superior autobiographical memory. Cortex, 151, 1-14. doi: 10.1016/j.cortex.2022.02.007

Enhanced semantic memory in a case of highly superior autobiographical memory

2021

Journal Article

Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective

Levitis, Elizabeth, van Praag, Cassandra D Gould, Gau, Rémi, Heunis, Stephan, DuPre, Elizabeth, Kiar, Gregory, Bottenhorn, Katherine L, Glatard, Tristan, Nikolaidis, Aki, Whitaker, Kirstie Jane, Mancini, Matteo, Niso, Guiomar, Afyouni, Soroosh, Alonso-Ortiz, Eva, Appelhoff, Stefan, Arnatkeviciute, Aurina, Atay, Selim Melvin, Auer, Tibor, Baracchini, Giulia, Bayer, Johanna M M, Beauvais, Michael J S, Bijsterbosch, Janine D, Bilgin, Isil P, Bollmann, Saskia, Bollmann, Steffen, Botvinik-Nezer, Rotem, Bright, Molly G, Calhoun, Vince D, Chen, Xiao ... Maumet, Camille (2021). Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective. GigaScience, 10 (8) giab051. doi: 10.1093/gigascience/giab051

Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective

2021

Journal Article

Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

Gau, Rémi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L., Bilgin, Isil P., Yang, Yu-Fang, Huntenburg, Julia M., Bayer, Johanna M.M., Bethlehem, Richard A.I., Rhoads, Shawn A., Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P., Huijser, Dorien C., Sandström, Malin S., Herholz, Peer, Nastase, Samuel A., Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael ... Zuo, Xi-Nian (2021). Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Neuron, 109 (11), 1769-1775. doi: 10.1016/j.neuron.2021.04.001

Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

2021

Other Outputs

Computational in vivo tissue characterisation for multi-contrast high-resolution magnetic resonance imaging data

Shaw, Thomas (2021). Computational in vivo tissue characterisation for multi-contrast high-resolution magnetic resonance imaging data. PhD Thesis, Queensland Brain Institute, The University of Queensland. doi: 10.14264/ae6e21a

Computational in vivo tissue characterisation for multi-contrast high-resolution magnetic resonance imaging data

2020

Journal Article

Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI

Shaw, Thomas, York, Ashley, Ziaei, Maryam, Barth, Markus and Bollmann, Steffen (2020). Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI. NeuroImage, 218 116798, 116798. doi: 10.1016/j.neuroimage.2020.116798

Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI

2020

Journal Article

Towards optimising MRI characterisation of Tissue (TOMCAT) dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) data

Shaw, Thomas, York, Ashley, Barth, Markus and Bollmann, Steffen (2020). Towards optimising MRI characterisation of Tissue (TOMCAT) dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) data. Data in Brief, 32 106043, 106043. doi: 10.1016/j.dib.2020.106043

Towards optimising MRI characterisation of Tissue (TOMCAT) dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) data

2020

Journal Article

Dissociable effects of tDCS polarity on latent decision processes are associated with individual differences in neurochemical concentrations and cortical morphology

Filmer, Hannah L., Ballard, Timothy, Ehrhardt, Shane E., Bollmann, Saskia, Shaw, Thomas B., Mattingley, Jason B. and Dux, Paul E. (2020). Dissociable effects of tDCS polarity on latent decision processes are associated with individual differences in neurochemical concentrations and cortical morphology. Neuropsychologia, 141 107433, 1-9. doi: 10.1016/j.neuropsychologia.2020.107433

Dissociable effects of tDCS polarity on latent decision processes are associated with individual differences in neurochemical concentrations and cortical morphology

2019

Journal Article

Non-linear realignment improves hippocampus subfield segmentation reliability

Shaw, Thomas B., Bollmann, Steffen, Atcheson, Nicole T., Strike, Lachlan T., Guo, Christine, McMahon, Katie L., Fripp, Jurgen, Wright, Margaret J., Salvado, Olivier and Barth, Markus (2019). Non-linear realignment improves hippocampus subfield segmentation reliability. NeuroImage, 203 116206, 116206. doi: 10.1016/j.neuroimage.2019.116206

Non-linear realignment improves hippocampus subfield segmentation reliability

Funding

Current funding

  • 2024 - 2026
    Predicting functional decline in MND using metabolic body mapping
    Cure for MND Foundation - Impact Grants
    Open grant
  • 2024 - 2025
    AMII: Asia-pacific MND Imaging Initiative (2022 FightMND Collaborative Initiatives Grant administered by The University of Sydney)
    University of Sydney
    Open grant

Past funding

  • 2022 - 2024
    Non-invasive approaches for alleviating symptoms in Motor Neurone Disease
    Research Donation Generic
    Open grant
  • 2021 - 2024
    Ultra-High Field MRI of Spinal Cord Tissue in Motor Neurone Diseases
    Motor Neurone Disease Research Institute of Australia Inc
    Open grant

Supervision

Availability

Dr Thomas Shaw is:
Available for supervision

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Supervision history

Current supervision

Media

Enquiries

Contact Dr Thomas Shaw directly for media enquiries about:

  • 7T
  • Motor Neurone Disease
  • MRI
  • neuroimaging
  • Ultra-High Field

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