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2014 Journal Article Erratum: Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels (J. Dairy Sci. 95:4114-4129)Erbe, M., Hayes, B. J., Matukumalli, L. K., Goswami, S., Bowman, P. J., Reich, C. M., Mason, B. A. and Goddard, M. E. (2014). Erratum: Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels (J. Dairy Sci. 95:4114-4129). Journal of Dairy Science, 97 (10), 6622-6622. doi: 10.3168/jds.2014-97-10-6622 |
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2014 Journal Article Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictionsDruet, T., Macleod, I. M. and Hayes, B. J. (2014). Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions. Heredity, 112 (1), 39-47. doi: 10.1038/hdy.2013.13 |
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2014 Conference Publication Genomic evaluations in the Australian sheep industrySwan, A. A, Brown, D. J., Daetwyler, H. D., Hayes, B. J., Kelly, M., Moghaddar, N. and van der Werf, J. H. J. (2014). Genomic evaluations in the Australian sheep industry. 10th World Congress of Genetics Applied to Livestock Production, Vancouver Canada, 2014. |
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2013 Journal Article Author reply to A commentary on Pitfalls of predicting complex traits from SNPsWray, Naomi R., Yang, Jian, Hayes, Ben J., Price, Alkes L., Goddard, Michael E. and Visscher, Peter M. (2013). Author reply to A commentary on Pitfalls of predicting complex traits from SNPs. Nature Reviews Genetics, 14 (12), 894-894. doi: 10.1038/nrg3457-c2 |
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2013 Journal Article Metagenomics of rumen bacteriophage from thirteen lactating dairy cattleRoss, Elizabeth M., Petrovski, Steve, Moate, Peter J. and Hayes, Ben J. (2013). Metagenomics of rumen bacteriophage from thirteen lactating dairy cattle. BMC Microbiology, 13. doi: 10.1186/1471-2180-13-242 |
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2013 Journal Article Effect of prior distributions on accuracy of genomic breeding values for two dairy traitsNicolazzi, Ezequiel L., Negrini, Riccardo, Chamberlain, Amanda J., Goddard, Michael E., Marsan, Paolo Ajmone and Hayes, Ben J. (2013). Effect of prior distributions on accuracy of genomic breeding values for two dairy traits. Italian Journal of Animal Science, 12 (4) e91, 555-561. doi: 10.4081/ijas.2013.e91 |
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2013 Journal Article Metagenomic predictions: from microbiome to complex health and environmental phenotypes in humans and cattleRoss, Elizabeth M., Moate, Peter J., Marett, Leah C., Cocks, Ben G. and Hayes, Ben J. (2013). Metagenomic predictions: from microbiome to complex health and environmental phenotypes in humans and cattle. PLoS One, 8 (9) e73056, e73056. doi: 10.1371/journal.pone.0073056 |
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2013 Book Chapter Overview of statistical methods for genome-wide association studies (GWAS)Hayes, Ben (2013). Overview of statistical methods for genome-wide association studies (GWAS). Genome-wide association studies and genomic prediction. (pp. 149-169) New York, NY, United States: Humana Press. doi: 10.1007/978-1-62703-447-0_6 |
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2013 Journal Article Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errorsMacLeod, Iona M., Larkin, Denis M., Lewin, Harris A., Hayes, Ben J. and Goddard, Mike E. (2013). Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errors. Molecular Biology and Evolution, 30 (9), 2209-2223. doi: 10.1093/molbev/mst125 |
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2013 Journal Article Investigating the effect of two methane-mitigating diets on the rumen microbiome using massively parallel sequencingRoss, E. M., Moate, P. J., Marett, L., Cocks, B. G. and Hayes, B. J. (2013). Investigating the effect of two methane-mitigating diets on the rumen microbiome using massively parallel sequencing. Journal of Dairy Science, 96 (9), 6030-6046. doi: 10.3168/jds.2013-6766 |
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2013 Conference Publication Use of molecular technologies for the advancement of animal breeding: genomic selection in dairy cattle populations in Australia, Ireland and New ZealandSpelman, Richard J., Hayes, Ben J. and Berry, Donagh P. (2013). Use of molecular technologies for the advancement of animal breeding: genomic selection in dairy cattle populations in Australia, Ireland and New Zealand. Clayton, VIC, Australia: C S I R O Publishing. doi: 10.1071/AN12304 |
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2013 Journal Article Genes of the RNASE5 pathway contain SNP associated with milk production traits in dairy cattleRaven, Lesley-Ann, Cocks, Benjamin G., Pryce, Jennie E., Cottrell, Jeremy J. and Hayes, Ben J. (2013). Genes of the RNASE5 pathway contain SNP associated with milk production traits in dairy cattle. Genetics Selection Evolution, 45 (1) 25, 391-398. doi: 10.1186/1297-9686-45-25 |
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2013 Journal Article Pitfalls of predicting complex traits from SNPsWray, Naomi R., Yang, Jian, Hayes, Ben J., Price, Alkes L., Goddard, Michael E. and Visscher, Peter M. (2013). Pitfalls of predicting complex traits from SNPs. Nature Reviews Genetics, 14 (7), 507-515. doi: 10.1038/nrg3457 |
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2013 Journal Article The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptationHayes, Ben J., Lewin, Harris A. and Goddard, Michael E. (2013). The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation. Trends in Genetics, 29 (4), 206-214. doi: 10.1016/j.tig.2012.11.009 |
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2013 Journal Article Prospects for genomic selection in forage plant speciesHayes, Benjamin J., Cogan, Noel O. I., Pembleton, Luke W., Goddard, Michael E., Wang, Junping, Spangenberg, German C. and Forster, John W. (2013). Prospects for genomic selection in forage plant species. Plant Breeding, 132 (2), 133-143. doi: 10.1111/pbr.12037 |
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2013 Journal Article Latent biochemical relationships in the blood-milk metabolic axis of dairy cows revealed by statistical integration of 1H NMR spectroscopic dataMaher, Anthony D., Hayes, Benjamin, Cocks, Benjamin, Marett, Leah, Wales, William J. and Rochfort, Simone J. (2013). Latent biochemical relationships in the blood-milk metabolic axis of dairy cows revealed by statistical integration of 1H NMR spectroscopic data. Journal of Proteome Research, 12 (3), 1428-1435. doi: 10.1021/pr301056q |
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2013 Journal Article Comparison of heritabilities of dairy traits in Australian Holstein-Friesian cattle from genomic and pedigree data and implications for genomic evaluationsHaile-Mariam, M., Nieuwhof, G. J., Beard, K. T., Konstatinov, K. V. and Hayes, B. J. (2013). Comparison of heritabilities of dairy traits in Australian Holstein-Friesian cattle from genomic and pedigree data and implications for genomic evaluations. Journal of Animal Breeding and Genetics, 130 (1), 20-31. doi: 10.1111/j.1439-0388.2013.01001.x |
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2013 Journal Article PrefaceGondro, Cedric, Van Der Werf, Julius and Hayes, Ben (2013). Preface. Methods in Molecular Biology, 1019. doi: 10.1007/978-1-62703-447_0 |
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2013 Journal Article Accelerating improvement of livestock with genomic selectionMeuwissen, Theo, Hayes, Ben and Goddard, Mike (2013). Accelerating improvement of livestock with genomic selection. Annual Review of Animal Biosciences, 1 (1), 221-237. doi: 10.1146/annurev-animal-031412-103705 |
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2013 Conference Publication Genomic regions associated with differences in fat percentage in milk between Holstein and Jersery cattleKemper, K. E., Hayes, B. J. and Goddard, M. E. (2013). Genomic regions associated with differences in fat percentage in milk between Holstein and Jersery cattle. Association for the Advancement of Animal Breeding and Genetics, Napier, New Zealand, 20-23 October 2013. Red Hook, NY, United States: Curran Associates. |
