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2012

Journal Article

Discovery and trait association of single nucleotide polymorphisms from gene regions of influence on meat tenderness and long-chain omega-3 fatty acid content in Australian lamb

Knight, M. I., Daetwyler, H. D., Hayes, B. J., Hayden, M. J., Ball, A. J., Pethick, D. W. and McDonagh, M. B. (2012). Discovery and trait association of single nucleotide polymorphisms from gene regions of influence on meat tenderness and long-chain omega-3 fatty acid content in Australian lamb. Animal Production Science, 52 (7), 591-600. doi: 10.1071/AN11229

Discovery and trait association of single nucleotide polymorphisms from gene regions of influence on meat tenderness and long-chain omega-3 fatty acid content in Australian lamb

2012

Journal Article

Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markers

Pryce, J. E., Arias, J., Bowman, P. J., Davis, S. R., Macdonald, K. A., Waghorn, G. C., Wales, W. J., Williams, Y. J., Spelman, R. J. and Hayes, B. J. (2012). Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markers. Journal of Dairy Science, 95 (4), 2108-2119. doi: 10.3168/jds.2011-4628

Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markers

2012

Journal Article

Design of a bovine low-density snp array optimized for imputation

Boichard, Didier, Chung, Hoyoung, Dassonneville, Romain, David, Xavier, Eggen, Andre, Fritz, Sebastien, Gietzen, Kimberly J., Hayes, Ben J., Lawley, Cynthia T., Sonstegard, Tad S., Van Tassell, Curtis P., VanRaden, Paul M., Viaud-Martinez, Karine A. and Wiggans, George R. (2012). Design of a bovine low-density snp array optimized for imputation. PLoS One, 7 (3) e34130, e34130. doi: 10.1371/journal.pone.0034130

Design of a bovine low-density snp array optimized for imputation

2012

Journal Article

A review of how dairy farmers can use and profit from genomic technologies

Pryce, Jennie and Hayes, Ben (2012). A review of how dairy farmers can use and profit from genomic technologies. Animal Production Science, 52 (3), 180-184. doi: 10.1071/AN11172

A review of how dairy farmers can use and profit from genomic technologies

2012

Journal Article

Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock

White, Jason D., Allingham, Peter G., Gorman, Chris M., Emery, David L., Hynd, Philip, Owens, John, Bell, Amy, Siddell, Jason, Harper, Greg, Hayes, Ben J., Daetwyler, Hans D., Usmar, Jonathan, Goddard, Mike E., Henshall, John M., Dominik, Sonja, Brewer, Heather, van der Werf, Julius H. J., Nicholas, Frank W., Warner, Robyn, Hofmyer, Chris, Longhurst, Terry, Fisher, Troy, Swan, Paul, Forage, Rob and Oddy, V. Hutton (2012). Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock. Animal Production Science, 52 (2-3), 157-171. doi: 10.1071/AN11085

Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock

2012

Journal Article

Components of the accuracy of genomic prediction in a multi-breed sheep population

Daetwyler, H. D., Kemper, K. E., van der Werf, J. H. J. and Hayes, B. J. (2012). Components of the accuracy of genomic prediction in a multi-breed sheep population. Journal of Animal Science, 90 (10), 3375-3384. doi: 10.2527/jas.2011-4557

Components of the accuracy of genomic prediction in a multi-breed sheep population

2012

Journal Article

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

Kijas, James W., Lenstra, Johannes A., Hayes, Ben, Boitard, Simon, Neto, Laercio R. Porto, San Cristobal, Magali, Servin, Bertrand, McCulloch, Russell, Whan, Vicki, Gietzen, Kimberly, Paiva, Samuel, Barendse, William, Ciani, Elena, Raadsma, Herman, McEwan, John, Dalrymple, Brian and Int Sheep Genomics Consortium (2012). Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection. PLoS Biology, 10 (2) e1001258, e1001258. doi: 10.1371/journal.pbio.1001258

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

2012

Journal Article

Validation of single nucleotide polymorphisms associated with milk production traits in dairy cattle

Chamberlain, A. J., Hayes, B. J., Savin, K., Bolormaa, S., McPartlan, H. C., Bowman, P. J., Van der Jagt, C., MacEachern, S. and Goddard, M. E. (2012). Validation of single nucleotide polymorphisms associated with milk production traits in dairy cattle. Journal of Dairy Science, 95 (2), 864-875. doi: 10.3168/jds.2010-3786

Validation of single nucleotide polymorphisms associated with milk production traits in dairy cattle

2012

Journal Article

Accuracy of genotype imputation in sheep breeds

Hayes, B. J., Bowman, P. J., Daetwyler, H. D., Kijas, J. W. and van der Werf, J. H. J. (2012). Accuracy of genotype imputation in sheep breeds. Animal Genetics, 43 (1), 72-80. doi: 10.1111/j.1365-2052.2011.02208.x

Accuracy of genotype imputation in sheep breeds

2012

Book Chapter

Genome-wide association studies and linkage disequilibrium in cattle

Goddard, M. E. and Hayes, B. J. (2012). Genome-wide association studies and linkage disequilibrium in cattle. Bovine genomics. (pp. 192-210) edited by James E. Womack. Oxford, United Kingdom: John Wiley & Sons. doi: 10.1002/9781118301739.ch13

Genome-wide association studies and linkage disequilibrium in cattle

2012

Journal Article

Novel strategies to minimize progeny inbreeding while maximizing genetic gain using genomic information

Pryce, J. E., Hayes, B. J. and Goddard, M. E. (2012). Novel strategies to minimize progeny inbreeding while maximizing genetic gain using genomic information. Journal of Dairy Science, 95 (1), 377-388. doi: 10.3168/jds.2011-4254

Novel strategies to minimize progeny inbreeding while maximizing genetic gain using genomic information

2011

Journal Article

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

Lien, Sigbjorn, Gidskehaug, Lars, Moen, Thomas, Hayes, Ben J., Berg, Paul R., Davidson, William S., Omholt, Stig W. and Kent, Matthew P. (2011). A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics, 12 (1) 615. doi: 10.1186/1471-2164-12-615

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

2011

Journal Article

Impacts of stock enhancement strategies on the effective population size of Murray cod, Maccullochella peelii, a threatened Australian fish

Ingram, B. A., Hayes, B. and Rourke, M. L. (2011). Impacts of stock enhancement strategies on the effective population size of Murray cod, Maccullochella peelii, a threatened Australian fish. Fisheries Management and Ecology, 18 (6), 467-481. doi: 10.1111/j.1365-2400.2011.00798.x

Impacts of stock enhancement strategies on the effective population size of Murray cod, Maccullochella peelii, a threatened Australian fish

2011

Journal Article

Using the genomic relationship matrix to predict the accuracy of genomic selection

Goddard, M. E., Hayes, B. J. and Meuwissen, T. H. E. (2011). Using the genomic relationship matrix to predict the accuracy of genomic selection. Journal of Animal Breeding and Genetics, 128 (6), 409-421. doi: 10.1111/j.1439-0388.2011.00964.x

Using the genomic relationship matrix to predict the accuracy of genomic selection

2011

Journal Article

Use of a microsatellite-based pedigree in estimation of heritabilities for economic traits in Australian blue mussel, Mytilus galloprovincialis

Nguyen, T. T. T., Hayes, B. J., Guthridge, K., Ab Rahim, E. S. and Ingram, B. A. (2011). Use of a microsatellite-based pedigree in estimation of heritabilities for economic traits in Australian blue mussel, Mytilus galloprovincialis. Journal of Animal Breeding and Genetics, 128 (6), 482-490. doi: 10.1111/j.1439-0388.2011.00948.x

Use of a microsatellite-based pedigree in estimation of heritabilities for economic traits in Australian blue mussel, Mytilus galloprovincialis

2011

Journal Article

Quantitative trait loci for clinical mastitis on chromosomes 2, 6, 14 and 20 in Norwegian Red cattle

Sodeland, M., Kent, M. P., Olsen, H. G., Opsal, M. A., Svendsen, M., Sehested, E., Hayes, B. J. and Lien, S. (2011). Quantitative trait loci for clinical mastitis on chromosomes 2, 6, 14 and 20 in Norwegian Red cattle. Animal Genetics, 42 (5), 457-465. doi: 10.1111/j.1365-2052.2010.02165.x

Quantitative trait loci for clinical mastitis on chromosomes 2, 6, 14 and 20 in Norwegian Red cattle

2011

Journal Article

Genome-wide association mapping in Norwegian Red cattle identifies quantitative trait loci for fertility and milk production on BTA12

Olsen, H. G., Hayes, B. J., Kent, M. P., Nome, T., Svendsen, M., Larsgard, A. G. and Lien, S. (2011). Genome-wide association mapping in Norwegian Red cattle identifies quantitative trait loci for fertility and milk production on BTA12. Animal Genetics, 42 (5), 466-474. doi: 10.1111/j.1365-2052.2011.02179.x

Genome-wide association mapping in Norwegian Red cattle identifies quantitative trait loci for fertility and milk production on BTA12

2011

Journal Article

Variation in residual feed intake in Holstein-Friesian dairy heifers in southern Australia

Williams, Y. J., Pryce, J. E., Grainger, C., Wales, W. J., Linden, N., Porker, M. and Hayes, B. J. (2011). Variation in residual feed intake in Holstein-Friesian dairy heifers in southern Australia. Journal of Dairy Science, 94 (9), 4715-4725. doi: 10.3168/jds.2010-4015

Variation in residual feed intake in Holstein-Friesian dairy heifers in southern Australia

2011

Journal Article

Imputation of missing genotypes from sparse to high density using long-range phasing

Daetwyler, Hans D., Wiggans, George R., Hayes, Ben J., Woolliams, John A. and Goddard, Mike E. (2011). Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics, 189 (1), 317-327. doi: 10.1534/genetics.111.128082

Imputation of missing genotypes from sparse to high density using long-range phasing

2011

Journal Article

Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle

Sodeland, Marte, Grove, Harald, Kent, Matthew, Taylor, Simon, Svendsen, Morten, Hayes, Ben J. and Lien, Sigbjorn (2011). Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle. BMC Genetics, 12 70. doi: 10.1186/1471-2156-12-70

Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle