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Dr Dharmesh Bhuva
Dr

Dharmesh Bhuva

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Overview

Background

Dr Dharmesh D Bhuva is a NHMRC Emerging Leadership Fellow (EL1) on a mission to understand how complex systems of gene regulation and signalling produce diverse tissue phenotypes in health, disease, and development. He completed his PhD in Oct 2020 through the Department of Mathematics and Statistics, University of Melbourne, focusing on developing novel systems biology approaches to study molecular function and gene regulation in cancer systems. His current work focuses on extending these ideas to biological tissues through the development of computational methods to generate accurate biological insights from spatial molecular datasets.

Whilst being an early career researcher, he has developed high quality bioinformatics software that have been downloaded more than 160,000 times, has received >$3.25M in funding support, including NHMRC and MRFF, and has published in Genome biology and Nucleic Acids Research, some of the highest-ranking journals in his field. Dr Bhuva has organised and run various computational biology workshops at the University of Melbourne as well as the WEHI Bioinformatics and Computational Biology Masterclass (2021) that was delivered to the Asia-Pacific region. He currently supervises a PhD student and has co-supervised 2 successful MSc Bioinformatics students.

Availability

Dr Dharmesh Bhuva is:
Available for supervision

Qualifications

  • Bachelor of Computer Science, University of Southampton
  • Masters (Coursework) of Bioinformatics, University of Melbourne
  • Doctor of Philosophy of Mathematics and Statistics, University of Melbourne
  • Honorary Fellow, University of Adelaide, University of Adelaide

Research impacts

Dr Bhuva is an expert in developing and implementing novel computational methods that have been widely used in the field to advance knowledge of disease systems. He is a well-rounded early career researcher who has led teams to develop innovative solutions to complex analytics problems that enhance biological insight from data.

Contributions to science: Bhuva has worked in the fields of computational and systems biology for over 5 years with a focus on developing approaches to decipher complex molecular phenotypes and the regulatory mechanisms from various cancer data types, including single-cell and spatial transcriptomics. His recent work highlighted a wide-spread issue with analysing spatial ‘omics datasets and resulted in recommended best practices to address it. He has disseminated his work through 28 conferences, seminar talks and workshops (14 invitations).

Supervision, mentoring and teaching: Bhuva has delivered guest workshops to the University of Melbourne masters students for 4 consecutive years. He has also been invited to deliver 6 workshops, including one international workshop. He has successfully supervised 2 MSc students that have gone on to PhDs and has mentored 2 PhD students in his lab. He is currently supervising a PhD student (2023-present).

Professional engagement: Bhuva is a member of the Australian Bioinformatics and Computational Biology Society (ABACBS). He was on the organising committee of the annual ABACBS conference (2022, Melbourne). He has helped organise the WEHI Bioinformatics and Computational masterclass (Online, 2021) that had attendees from 15 countries. He formed the post-doctoral committee at the newly established South Australian Immunogenomics Cancer Institute (SAiGENCI) and served on the committee from 2024-2025.

Works

Search Professor Dharmesh Bhuva’s works on UQ eSpace

4 works between 2022 and 2025

1 - 4 of 4 works

2025

Journal Article

mastR: an R package for automated identification of tissue-specific gene signatures in multi-group differential expression analysis

Chen, Jinjin, Mohamed, Ahmed, Bhuva, Dharmesh D., Davis, Melissa J. and Tan, Chin Wee (2025). mastR: an R package for automated identification of tissue-specific gene signatures in multi-group differential expression analysis. Bioinformatics, 41 (3) btaf114. doi: 10.1093/bioinformatics/btaf114

mastR: an R package for automated identification of tissue-specific gene signatures in multi-group differential expression analysis

2024

Journal Article

Library size confounds biology in spatial transcriptomics data

Bhuva, Dharmesh D., Tan, Chin Wee, Salim, Agus, Marceaux, Claire, Pickering, Marie A., Chen, Jinjin, Kharbanda, Malvika, Jin, Xinyi, Liu, Ning, Feher, Kristen, Putri, Givanna, Tilley, Wayne D., Hickey, Theresa E., Asselin-Labat, Marie-Liesse, Phipson, Belinda and Davis, Melissa J. (2024). Library size confounds biology in spatial transcriptomics data. Genome Biology, 25 (1) 99. doi: 10.1186/s13059-024-03241-7

Library size confounds biology in spatial transcriptomics data

2022

Conference Publication

Deep single-cell, proteogenomic insights from SARS-CoV-2 infected lung tissues

Kulasinghe, Arutha, Tan, Chin Wee, Liu, Ning, Monkman, James, Killingbeck, Emily, Kim, Youngmi, Pan, Liuliu, Blick, Tony, Bhuva, Dharmesh, Feher, Kristen, Leon, Michael, Gregory, Mark, Short, Kirsty, Guimaraes, Fernando, Rhodes, Michael, Belz, Gabrielle and Davis, Melissa (2022). Deep single-cell, proteogenomic insights from SARS-CoV-2 infected lung tissues. SITC 37th Annual Meeting (SITC 2022), Boston, MA USA, 8-12 November 2022. London, United Kingdom: BMJ Publishing Group. doi: 10.1136/jitc-2022-sitc2022.0923

Deep single-cell, proteogenomic insights from SARS-CoV-2 infected lung tissues

2022

Conference Publication

MEDB-06. Spatial transcriptomic analysis of Sonic Hedgehog Medulloblastoma identifies that loss of heterogeneity and induced differentiation underlies the response to CDK4/6 inhibition

Vo, Tuan, Balderson, Brad, Jones, Kahli, Crawford, Joanna, Millar, Amanda, Tolson, Elissa, Ruitenberg, Marc, Robertson, Thomas, Bhuva, Dharmesh, Davis, Melissa, Wainwright, Brandon, Nguyen, Quan and Genovesi, Laura (2022). MEDB-06. Spatial transcriptomic analysis of Sonic Hedgehog Medulloblastoma identifies that loss of heterogeneity and induced differentiation underlies the response to CDK4/6 inhibition. International Symposium on Pediatric Neuro-Oncology, Hamburg, Germany, 12–15 June 2022. Cary, NC, United States: Oxford University Press. doi: 10.1093/neuonc/noac079.381

MEDB-06. Spatial transcriptomic analysis of Sonic Hedgehog Medulloblastoma identifies that loss of heterogeneity and induced differentiation underlies the response to CDK4/6 inhibition

Supervision

Availability

Dr Dharmesh Bhuva is:
Available for supervision

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Media

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