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2015 Journal Article Persistent variations in neuronal DNA methylation following cocaine self-administration and protracted abstinence in miceBaker-Andresen, Danay, Zhao, Qiongyi, Li, Xiang, Jupp, Bianca, Chesworth, Rose, Lawrence, Andrew J. and Bredy, Timothy (2015). Persistent variations in neuronal DNA methylation following cocaine self-administration and protracted abstinence in mice. Neuroepigenetics, 4, 1-11. doi: 10.1016/j.nepig.2015.10.001 |
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2015 Journal Article Global transcriptome and gene regulation network for secondary metabolite biosynthesis of tea plant (Camellia sinensis)Li, Chun-Fang, Zhu, Yan, Yu, Yao, Zhao, Qiong-Yi, Wang, Sheng-Jun, Wang, Xin-Chao, Yao, Ming-Zhe, Luo, Da, Li, Xuan, Chen, Liang and Yang, Ya-Jun (2015). Global transcriptome and gene regulation network for secondary metabolite biosynthesis of tea plant (Camellia sinensis). BMC Genomics, 16 (560) 560. doi: 10.1186/s12864-015-1773-0 |
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2015 Journal Article Purification of neural precursor cells reveals the presence of distinct, stimulus-specific subpopulations of quiescent precursors in the adult mouse hippocampusJhaveri, Dhanisha J., O'Keeffe, Imogen, Robinson, Gregory J., Zhao, Qiong-Yi, Zhang, Zong Hong, Nink, Virginia, Narayanan, Ramesh K., Osborne, Geoffrey W., Wray, Naomi R. and Bartlett, Perry F. (2015). Purification of neural precursor cells reveals the presence of distinct, stimulus-specific subpopulations of quiescent precursors in the adult mouse hippocampus. Journal of Neuroscience, 35 (21), 8132-8144. doi: 10.1523/JNEUROSCI.0504-15.2015 |
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2015 Conference Publication Epitranscriptomic mechanisms of memory stabilityBredy, T., Widagdo, J. and Zhao, Q.-Y. (2015). Epitranscriptomic mechanisms of memory stability. 25th Biennial Meeting of the International Society for Neurochemistry Jointly with the 13th Meeting of the Asian Pacific Society for Neurochemistry in Conjunction with the 35th Meeting of the Australasian Neuroscience Society, Cairns, QLD Australia, 23-27 August 2015. Chichester, West Sussex, United Kingdom: Wiley-Blackwell Publishing. doi: 10.1111/jnc.13185 |
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2015 Journal Article New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritisLee, S. Hong, Byrne, Enda M., Hultman, Christina M., Kahler, Anna, Vinkhuyzen, Anna A. E., Ripke, Stephan, Andreassen, Ole A., Frisell, Thomas, Gusev, Alexander, Hu, Xinli, Karlsson, Robert, Mantzioris, Vasilis X., McGrath, John J., Mehta, Divya, Stahl, Eli A., Zhao, Qiongyi, Kendler, Kenneth S., Sullivan, Patrick F., Price, Alkes L., O'Donovan, Michael, Okada, Yukinori, Mowry, Bryan J., Raychaudhuri, Soumya, Wray, Naomi R., Schizophrenia Working Group of the Psychiatric Genomics Consortium, Rheumatoid Arthritis Consortium International and Visscher, Peter M . (2015). New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritis. International Journal of Epidemiology, 44 (5) dyv136, 1-16. doi: 10.1093/ije/dyv136 |
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2015 Conference Publication Activity-dependent RNA methylation in learning and memoryWidagdo, J., Zhao, Q. -Y., Anggono, V. and Bredy, T. (2015). Activity-dependent RNA methylation in learning and memory. 25th Biennial Meeting of the International Society for Neurochemistry Jointly with the 13th Meeting of the Asian Pacific Society for Neurochemistry in Conjunction with the 35th Meeting of the Australasian Neuroscience Society, Cairns, QLD Australia, 23-27 August 2015. Chichester, West Sussex, United Kingdom: Wiley-Blackwell Publishing. doi: 10.1111/jnc.13188 |
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2015 Conference Publication Exploring the role of histone demethylase, UTX, in mediating sex differences in fear-related learning and memoryRatnu, V., Li, X., Emami, M., Zhao, Q. -Y. and Bredy, T. (2015). Exploring the role of histone demethylase, UTX, in mediating sex differences in fear-related learning and memory. 25th Biennial Meeting of the International Society for Neurochemistry Jointly with the 13th Meeting of the Asian Pacific Society for Neurochemistry in Conjunction with the 35th Meeting of the Australasian Neuroscience Society, Cairns, QLD Australia, 23-27 August 2015. Chichester, West Sussex, United Kingdom: Wiley-Blackwell Publishing. doi: 10.1111/jnc.13188 |
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2014 Journal Article Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complexWang, Hua-Ling, Yang, Jiao, Boykin, Laura M., Zhao, Qiong-Yi, Wang, Yu-Jun, Liu, Shu-Sheng and Wang, Xiao-Wei (2014). Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complex. Scientific Reports, 4 (1) 6351, 6351. doi: 10.1038/srep06351 |
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2014 Journal Article Methyl CpG Binding Domain Ultra-Sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylationLi, X., Baker-Andresen, D., Zhao, Q., Marshall, V. and Bredy, T. W. (2014). Methyl CpG Binding Domain Ultra-Sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation. Genes, Brain and Behavior, 13 (7), 721-731. doi: 10.1111/gbb.12150 |
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2014 Journal Article A comparative study of techniques for differential expression analysis on RNA-seq dataZhang, Zong Hong, Jhaveri, Dhanisha J., Marshall, Vikki M., Bauer, Denis C., Edson, Janette, Narayanan, Ramesh K., Robinson, Gregory J., Lundberg, Andreas E., Bartlett, Perry F., Wray, Naomi R. and Zhao, Qiong-Yi (2014). A comparative study of techniques for differential expression analysis on RNA-seq data. PLoS One, 9 (8) e103207, 1-11. doi: 10.1371/journal.pone.0103207 |
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2014 Journal Article Towards a molecular characterization of autism spectrum disorders: an exome sequencing and systems approachAn, J. Y., Cristino, A. S., Zhao, Q., Edson, J., Williams, S. M., Ravine, D., Wray, J., Marshall, V. M., Hunt, A., Whitehouse, A. J. O. and Claudianos, C. (2014). Towards a molecular characterization of autism spectrum disorders: an exome sequencing and systems approach. Translational Psychiatry, 4 (6) e394, e394.1-e394.9. doi: 10.1038/tp.2014.38 |
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2014 Journal Article Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly speciesYe, Xiao-Dong, Su, Yun-Lin, Zhao, Qiong-Yi, Xia, Wen-Qiang, Liu, Shu-Sheng and Wang, Xiao-We (2014). Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly species. BMC Genomics, 15 (1) 370. doi: 10.1186/1471-2164-15-370 |
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2014 Journal Article Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptationLi, Xiang, Wei, Wei, Zhao, Qiong-Yi, Widagdo, Jocelyn, Baker-Andresen, Danay, Flavell, Charlotte R., D'Alessio, Ana, Zhang, Yi and Bredy, Timothy W. (2014). Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation. Proceedings of the National Academy of Sciences, 111 (19), 7120-7125. doi: 10.1073/pnas.1318906111 |
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2014 Journal Article Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum LWei, Libin, Miao, Hongmei, Li, Chun, Duan, Yinghui, Niu, Jiaojiao, Zhang, Tide, Zhao, Qiongyi and Zhang, Haiyang (2014). Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum L. Molecular Breeding, 34 (4), 2205-2217. doi: 10.1007/s11032-014-0174-4 |
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2013 Journal Article Global transcriptome profiles of Camellia sinensis during cold acclimationWang, Xin-Chao, Zhao, Qiong-Yi, Ma, Chun-Lei, Zhang, Zong-Hong, Cao, Hong-Li, Kong, Yi-Meng, Yue, Chuan, Hao, Xin-Yuan, Chen, Liang, Ma, Jian-Qiang, Jin, Ji-Qiang, Li, Xuan and Yang, Ya-Jun (2013). Global transcriptome profiles of Camellia sinensis during cold acclimation. BMC Genomics, 14 (1) 415. doi: 10.1186/1471-2164-14-415 |
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2013 Journal Article The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complexWang, Hua-Ling, Yang, Jiao, Boykin, Laura M., Zhao, Qiong-Yi, Li, Qian, Wang, Xiao-Wei and Liu, Shu-Sheng (2013). The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex. BMC Genomics, 14 (1) 401. doi: 10.1186/1471-2164-14-401 |
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2012 Journal Article Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly speciesWang, Xiao-Wei, Zhao, Qiong-Yi, Luan, Jun-Bo, Wang, Yu-Jun, Yan, Gen-Hong and Liu, Shu-Sheng (2012). Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species. BMC Genomics, 13 (1) 529, 529.1-529.13. doi: 10.1186/1471-2164-13-529 |
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2012 Journal Article Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptomeShao, Wei, Zhao, Qiong-Yi, Wang, Xiu-Ye, Xu, Xin-Yan, Tang, Qing, Li, Muwang, Li, Xuan and Xu, Yong-Zhen (2012). Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptome. RNA, 18 (7), 1395-1407. doi: 10.1261/rna.029751.111 |
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2011 Journal Article Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative studyZhao, Qiong-Yi, Wang, Yi, Kong, Yi-Meng, Luo, Da, Li, Xuan and Hao, Pei (2011). Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics, 12 (Suppl. 14) S2, 1-12. doi: 10.1186/1471-2105-12-S14-S2 |
