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2015

Conference Publication

Exploring the role of histone demethylase, UTX, in mediating sex differences in fear-related learning and memory

Ratnu, V., Li, X., Emami, M., Zhao, Q. -Y. and Bredy, T. (2015). Exploring the role of histone demethylase, UTX, in mediating sex differences in fear-related learning and memory. 25th Biennial Meeting of the International Society for Neurochemistry Jointly with the 13th Meeting of the Asian Pacific Society for Neurochemistry in Conjunction with the 35th Meeting of the Australasian Neuroscience Society, Cairns, QLD Australia, 23-27 August 2015. Chichester, West Sussex, United Kingdom: Wiley-Blackwell Publishing. doi: 10.1111/jnc.13188

Exploring the role of histone demethylase, UTX, in mediating sex differences in fear-related learning and memory

2014

Journal Article

Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complex

Wang, Hua-Ling, Yang, Jiao, Boykin, Laura M., Zhao, Qiong-Yi, Wang, Yu-Jun, Liu, Shu-Sheng and Wang, Xiao-Wei (2014). Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complex. Scientific Reports, 4 (1) 6351, 6351. doi: 10.1038/srep06351

Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complex

2014

Journal Article

Methyl CpG Binding Domain Ultra-Sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation

Li, X., Baker-Andresen, D., Zhao, Q., Marshall, V. and Bredy, T. W. (2014). Methyl CpG Binding Domain Ultra-Sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation. Genes, Brain and Behavior, 13 (7), 721-731. doi: 10.1111/gbb.12150

Methyl CpG Binding Domain Ultra-Sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation

2014

Journal Article

A comparative study of techniques for differential expression analysis on RNA-seq data

Zhang, Zong Hong, Jhaveri, Dhanisha J., Marshall, Vikki M., Bauer, Denis C., Edson, Janette, Narayanan, Ramesh K., Robinson, Gregory J., Lundberg, Andreas E., Bartlett, Perry F., Wray, Naomi R. and Zhao, Qiong-Yi (2014). A comparative study of techniques for differential expression analysis on RNA-seq data. PLoS One, 9 (8) e103207, 1-11. doi: 10.1371/journal.pone.0103207

A comparative study of techniques for differential expression analysis on RNA-seq data

2014

Journal Article

Towards a molecular characterization of autism spectrum disorders: an exome sequencing and systems approach

An, J. Y., Cristino, A. S., Zhao, Q., Edson, J., Williams, S. M., Ravine, D., Wray, J., Marshall, V. M., Hunt, A., Whitehouse, A. J. O. and Claudianos, C. (2014). Towards a molecular characterization of autism spectrum disorders: an exome sequencing and systems approach. Translational Psychiatry, 4 (6) e394, e394.1-e394.9. doi: 10.1038/tp.2014.38

Towards a molecular characterization of autism spectrum disorders: an exome sequencing and systems approach

2014

Journal Article

Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly species

Ye, Xiao-Dong, Su, Yun-Lin, Zhao, Qiong-Yi, Xia, Wen-Qiang, Liu, Shu-Sheng and Wang, Xiao-We (2014). Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly species. BMC Genomics, 15 (1) 370. doi: 10.1186/1471-2164-15-370

Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly species

2014

Journal Article

Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation

Li, Xiang, Wei, Wei, Zhao, Qiong-Yi, Widagdo, Jocelyn, Baker-Andresen, Danay, Flavell, Charlotte R., D'Alessio, Ana, Zhang, Yi and Bredy, Timothy W. (2014). Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation. Proceedings of the National Academy of Sciences, 111 (19), 7120-7125. doi: 10.1073/pnas.1318906111

Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation

2014

Journal Article

Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum L

Wei, Libin, Miao, Hongmei, Li, Chun, Duan, Yinghui, Niu, Jiaojiao, Zhang, Tide, Zhao, Qiongyi and Zhang, Haiyang (2014). Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum L. Molecular Breeding, 34 (4), 2205-2217. doi: 10.1007/s11032-014-0174-4

Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum L

2013

Journal Article

Global transcriptome profiles of Camellia sinensis during cold acclimation

Wang, Xin-Chao, Zhao, Qiong-Yi, Ma, Chun-Lei, Zhang, Zong-Hong, Cao, Hong-Li, Kong, Yi-Meng, Yue, Chuan, Hao, Xin-Yuan, Chen, Liang, Ma, Jian-Qiang, Jin, Ji-Qiang, Li, Xuan and Yang, Ya-Jun (2013). Global transcriptome profiles of Camellia sinensis during cold acclimation. BMC Genomics, 14 (1) 415. doi: 10.1186/1471-2164-14-415

Global transcriptome profiles of Camellia sinensis during cold acclimation

2013

Journal Article

The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex

Wang, Hua-Ling, Yang, Jiao, Boykin, Laura M., Zhao, Qiong-Yi, Li, Qian, Wang, Xiao-Wei and Liu, Shu-Sheng (2013). The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex. BMC Genomics, 14 (1) 401. doi: 10.1186/1471-2164-14-401

The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex

2012

Journal Article

Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species

Wang, Xiao-Wei, Zhao, Qiong-Yi, Luan, Jun-Bo, Wang, Yu-Jun, Yan, Gen-Hong and Liu, Shu-Sheng (2012). Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species. BMC Genomics, 13 (1) 529, 529.1-529.13. doi: 10.1186/1471-2164-13-529

Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species

2012

Journal Article

Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptome

Shao, Wei, Zhao, Qiong-Yi, Wang, Xiu-Ye, Xu, Xin-Yan, Tang, Qing, Li, Muwang, Li, Xuan and Xu, Yong-Zhen (2012). Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptome. RNA, 18 (7), 1395-1407. doi: 10.1261/rna.029751.111

Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptome

2011

Journal Article

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

Zhao, Qiong-Yi, Wang, Yi, Kong, Yi-Meng, Luo, Da, Li, Xuan and Hao, Pei (2011). Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics, 12 (Suppl. 14) S2, 1-12. doi: 10.1186/1471-2105-12-S14-S2

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

2008

Journal Article

Phosphoinositides Regulate P2X<sub>4</sub> ATP-Gated Channels through Direct Interactions

Bernier, Louis-Philippe, Ase, Ariel R., Chevallier, Stephanie, Blais, Dominique, Zhao, Qi, Boue-Grabot, Eric, Logothetis, Diomedes and Seguela, Philippe (2008). Phosphoinositides Regulate P2X4 ATP-Gated Channels through Direct Interactions. Journal of Neuroscience, 28 (48), 12938-12945. doi: 10.1523/JNEUROSCI.3038-08.2008

Phosphoinositides Regulate P2X<sub>4</sub> ATP-Gated Channels through Direct Interactions