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2019 Journal Article Towards multi-breed genomic evaluations for female fertility of tropical beef cattleHayes, Ben J., Corbet, Nicholas J., Allen, Jack M., Laing, Alan R., Fordyce, Geoffry, Lyons, Russel, McGowan, Michael R. and Burns, Brian M. (2019). Towards multi-breed genomic evaluations for female fertility of tropical beef cattle. Journal of Animal Science, 97 (1), 55-62. doi: 10.1093/jas/sky417 |
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2019 Journal Article Multivariate genomic predictions for age at puberty in tropically adapted beef heifersEngle, Bailey N., Corbet, Nicholas J., Allen, Jamie M., Laing, Alan R., Fordyce, Geoffry, McGowan, Michael R., Burns, Brian M., Burns, Brian M. and Hayes, Ben J. (2019). Multivariate genomic predictions for age at puberty in tropically adapted beef heifers. Journal of Animal Science, 97 (1), 90-100. doi: 10.1093/jas/sky428 |
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2019 Journal Article Towards a new phenotype for tick resistance in beef and dairy cattle: a reviewBurrow, Heather M., Mans, Ben J., Cardoso, Fernando F., Birkett, Michael A., Kotze, Andrew C., Hayes, Ben J., Mapholi, Ntanganedzeni, Dzama, Kennedy, Marufu, Munyaradzi C., Githaka, Naftaly W. and Djikeng, Appolinaire (2019). Towards a new phenotype for tick resistance in beef and dairy cattle: a review. Animal Production Science, 59 (8), 1401-1427. doi: 10.1071/AN18487 |
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2019 Journal Article Functional Annotation of Animal Genomes (FAANG): Current Achievements and RoadmapGiuffra, Elisabetta, Tuggle, Christopher K., and the FAANG Consortium, Archibald, Alan L., Acloque, Herve, Chamberlain, Amanda J., Cochrane, Guy, Daetwyler, Hans D., Djebali, Sarah, Eory, Lel, Foissac, Sylvain, Goddard, Michael E., Groenen, Martien A. M., Halstead, Michelle, Harrison, Peter W., Hayes, Benjamin J., Kern, Colin, Khatib, Hasan, Kuo, Richard I., MacHugh, David E., Macleod, Iona M., Madsen, Ole, Reecy, James M., Ross, Pablo J., Watson, Mick, Wells, Jerry M. and Zhou, Huaijun (2019). Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap. Annual Review of Animal Biosciences, Vol 7, 7 (1), 65-88. doi: 10.1146/annurev-animal-020518-114913 |
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2018 Journal Article Accelerating crop genetic gains with genomic selectionVoss-Fels, Kai Peter, Cooper, Mark and Hayes, Ben John (2018). Accelerating crop genetic gains with genomic selection. Theoretical and Applied Genetics, 132 (3), 669-686. doi: 10.1007/s00122-018-3270-8 |
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2018 Journal Article Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polledKoufariotis, L., Hayes, B. J., Kelly, M., Burns, B. M., Lyons, R., Stothard, P., Chamberlain, A. J. and Moore, S. (2018). Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polled. Scientific Reports, 8 (1) 17761, 17761. doi: 10.1038/s41598-018-35698-5 |
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2018 Journal Article Harnessing genomic information for livestock improvementGeorges, Michel, Charlier, Carole and Hayes, Ben (2018). Harnessing genomic information for livestock improvement. Nature Reviews Genetics, 20 (3), 135-156. doi: 10.1038/s41576-018-0082-2 |
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2018 Journal Article Candidate mutations used to aid the prediction of genetic merit for female reproductive traits in tropical beef cattleFortes, Marina Rufino Salinas, Enculescu, Charmaine, Porto Neto, Laercio R., Lehnert, Sigrid A., McCulloch, Russell and Hayes, Ben (2018). Candidate mutations used to aid the prediction of genetic merit for female reproductive traits in tropical beef cattle. Revista Brasileira de Zootecnia, 47 e20170226. doi: 10.1590/rbz4720170226 |
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2018 Journal Article Genome variants associated with RNA splicing variations in bovine are extensively shared between tissuesXiang, Ruidong, Hayes, Ben J., Vander Jagt, Christy J., MacLeod, Iona M., Khansefid, Majid, Bowman, Phil J., Yuan, Zehu, Prowse-Wilkins, Claire P., Reich, Coralie M., Mason, Brett A., Garner, Josie B., Marett, Leah C., Chen, Yizhou, Bolormaa, Sunduimijid, Daetwyler, Hans D., Chamberlain, Amanda J. and Goddard, Michael E. (2018). Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues. BMC Genomics, 19 (1) 521, 521. doi: 10.1186/s12864-018-4902-8 |
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2018 Journal Article Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traitsWang, Min, Hancock, Timothy P., Chamberlain, Amanda J., Vander Jagt, Christy J., Pryce, Jennie E., Cocks, Benjamin G., Goddard, Mike E. and Hayes, Benjamin J. (2018). Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits. BMC Genomics, 19 (1) 395, 395. doi: 10.1186/s12864-018-4800-0 |
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2018 Journal Article Benchmarking Bayesian genome enabled-prediction models for age at first calving in Nellore cowsMota, Rodrigo Reis, Silva, Fabyano Fonseca e, Guimarães, Simone Eliza Facioni, Hayes, Ben, Fortes, Marina Rufino Salinas, Kelly, Matthew John, Guimarães, José Domingos, Penitente-Filho, Jurandy Mauro, Ventura, Henrique Torres and Moore, Stephen (2018). Benchmarking Bayesian genome enabled-prediction models for age at first calving in Nellore cows. Livestock Science, 211, 75-79. doi: 10.1016/j.livsci.2018.03.009 |
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2018 Journal Article The cost-benefit of genomic testing of heifers and using sexed semen in pasture-based dairy herdsNewton, J. E., Hayes, B. J. and Pryce, J. E. (2018). The cost-benefit of genomic testing of heifers and using sexed semen in pasture-based dairy herds. Journal of Dairy Science, 101 (7), 6159-6173. doi: 10.3168/jds.2017-13476 |
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2018 Journal Article Insights into population genetics and evolution of polyploids and their ancestorsJighly, Abdulqader, Lin, Zibei, Forster, John W., Spangenberg, German C., Hayes, Ben J. and Daetwyler, Hans D. (2018). Insights into population genetics and evolution of polyploids and their ancestors. Molecular Ecology Resources, 18 (5), 1157-1172. doi: 10.1111/1755-0998.12896 |
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2018 Journal Article An initiator codon mutation in SDE2 causes recessive embryonic lethality in Holstein cattleFritz, Sébastien, Hoze, Chris, Rebours, Emmanuelle, Barbat, Anne, Bizard, Méline, Chamberlain, Amanda, Escouflaire, Clémentine, Vander Jagt, Christy, Boussaha, Mekki, Grohs, Cécile, Allais-Bonnet, Aurélie, Philippe, Maëlle, Vallée, Amélie, Amigues, Yves, Hayes, Benjamin J., Boichard, Didier and Capitan, Aurélien (2018). An initiator codon mutation in SDE2 causes recessive embryonic lethality in Holstein cattle. Journal of Dairy Science, 101 (7), 6220-6231. doi: 10.3168/jds.2017-14119 |
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2018 Journal Article Variance explained by whole genome sequence variants in coding and regulatory genome annotations for six dairy traitsKoufariotis, Lambros T., Chen, Yi-Ping Phoebe, Stothard, Paul and Hayes, Ben J. (2018). Variance explained by whole genome sequence variants in coding and regulatory genome annotations for six dairy traits. BMC Genomics, 19 (237) 237, 237. doi: 10.1186/s12864-018-4617-x |
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2018 Journal Article Responses of dairy cows with divergent residual feed intake as calves to metabolic challenges during midlactation and the nonlactating periodDiGiacomo, K., Norris, E., Dunshea, F. R., Hayes, B. J., Marett, L. C., Wales, W. J. and Leury, B. J. (2018). Responses of dairy cows with divergent residual feed intake as calves to metabolic challenges during midlactation and the nonlactating period. Journal of Dairy Science, 101 (7), 6474-6485. doi: 10.3168/jds.2017-12569 |
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2018 Journal Article A multi-trait Bayesian method for mapping QTL and genomic predictionKemper, Kathryn E., Bowman, Philip J., Hayes, Benjamin J., Visscher, Peter M. and Goddard, Michael E. (2018). A multi-trait Bayesian method for mapping QTL and genomic prediction. Genetics Selection Evolution, 50 (1) 10, 10. doi: 10.1186/s12711-018-0377-y |
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2018 Journal Article Multibreed genomic prediction using multitrait genomic residual maximum likelihood and multitask Bayesian variable selectionCalus, M. P. L., Goddard, M. E., Wientjes, Y. C. J., Bowman, P. J. and Hayes, B. J. (2018). Multibreed genomic prediction using multitrait genomic residual maximum likelihood and multitask Bayesian variable selection. Journal of Dairy Science, 101 (5), 4279-4294. doi: 10.3168/jds.2017-13366 |
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2018 Journal Article Development of genomic prediction in sorghumHunt, Colleen H., van Eeuwijk, Fred A., Mace, Emma S., Hayes, Ben J. and Jordan, David R. (2018). Development of genomic prediction in sorghum. Crop Science, 58 (2), 690-700. doi: 10.2135/cropsci2017.08.0469 |
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2018 Journal Article Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics dataNguyen, Quan H., Tellam, Ross L., Naval-Sanchez, Marina, Porto-Neto, Laercio R., Barendse, William, Reverter, Antonio, Hayes, Benjamin, Kijas, James and Dalrymple, Brian P. (2018). Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data. Gigascience, 7 (3), 1-17. doi: 10.1093/gigascience/gix136 |
