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2015 Journal Article Rare variants in transcript and potential regulatory regions explain a small percentage of the missing heritability of complex traits in cattleGonzalez-Recio, Oscar, Daetwyler, Hans D., MacLeod, Iona M., Pryce, Jennie E., Bowman, Phil J., Hayes, Ben J. and Goddard, Michael E. (2015). Rare variants in transcript and potential regulatory regions explain a small percentage of the missing heritability of complex traits in cattle. PLoS One, 10 (12) e0143945, e0143945. doi: 10.1371/journal.pone.0143945 |
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2015 Journal Article Extensive variation between tissues in allele specific expression in an outbred mammalChamberlain, Amanda J., Vander Jagt, Christy J., Hayes, Benjamin J., Khansefid, Majid, Marett, Leah C., Millen, Catriona A., Nguyen, Thuy T. T. and Goddard, Michael E. (2015). Extensive variation between tissues in allele specific expression in an outbred mammal. BMC Genomics, 16 (1) 993. doi: 10.1186/s12864-015-2174-0 |
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2015 Journal Article Two-variance-component model improves genetic prediction in family datasetsTucker, George, Loh, Po-Ru, MacLeod, Iona M., Hayes, Ben J., Goddard, Michael E., Berger, Bonnie and Price, Alkes L. (2015). Two-variance-component model improves genetic prediction in family datasets. American Journal of Human Genetics, 97 (5), 677-690. doi: 10.1016/j.ajhg.2015.10.002 |
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2015 Journal Article A catalogue of novel bovine long noncoding RNA across 18 tissuesKoufariotis, Lambros T., Chen, Yi-Ping Phoebe, Chamberlain, Amanda, Jagt, Christy Vander and Hayes, Ben J. (2015). A catalogue of novel bovine long noncoding RNA across 18 tissues. PLoS One, 10 (10) e0141225, e0141225. doi: 10.1371/journal.pone.0141225 |
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2015 Journal Article Hot topic: Definition and implementation of a breeding value for feed efficiency in dairy cowsPryce, J. E., Gonzalez-Recio, O., Nieuwhof, G., Wales, W. J., Coffey, M. P., Hayes, B. J. and Goddard, M. E. (2015). Hot topic: Definition and implementation of a breeding value for feed efficiency in dairy cows. Journal of Dairy Science, 98 (10) 73864, 7340-7350. doi: 10.3168/jds.2015-9621 |
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2015 Journal Article Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracyBolormaa, S., Gore, K., van der Werf, J. H. J., Hayes, B. J. and Daetwyler, H. D. (2015). Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracy. Animal Genetics, 46 (5), 544-556. doi: 10.1111/age.12340 |
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2015 Journal Article Selection on optimal haploid value increases genetic gain and preserves more genetic diversity relative to genomic selectionDaetwyler, Hans D., Hayden, Matthew J., Spangenberg, German C. and Hayes, Ben J. (2015). Selection on optimal haploid value increases genetic gain and preserves more genetic diversity relative to genomic selection. Genetics, 200 (4), 1341-1348. doi: 10.1534/genetics.115.178038 |
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2015 Journal Article Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cowsAliloo, Hassan, Pryce, Jennie E., Gonzalez-Recio, Oscar, Cocks, Benjamin G. and Hayes, Ben J. (2015). Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows. BMC Genetics, 16 (1) 89. doi: 10.1186/s12863-015-0241-9 |
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2015 Journal Article Animal board invited review: Genetic possibilities to reduce enteric methane emissions from ruminantsPickering, N. K., Oddy, V. H., Basarab, J., Cammack, K., Hayes, B., Hegarty, R. S., Lassen, J., McEwan, J. C., Miller, S., Pinares-Patino, C. S. and de Haas, Y. (2015). Animal board invited review: Genetic possibilities to reduce enteric methane emissions from ruminants. Animal, 9 (9), 1431-1440. doi: 10.1017/S1751731115000968 |
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2015 Journal Article Impact of QTL properties on the accuracy of multi-breed genomic predictionWientjes, Yvonne C. J., Calus, Mario P. L., Goddard, Michael E. and Hayes, Ben J. (2015). Impact of QTL properties on the accuracy of multi-breed genomic prediction. Genetics Selection Evolution, 47 (42) 42, 1-16. doi: 10.1186/s12711-015-0124-6 |
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2015 Journal Article Including overseas performance information in genomic evaluations of Australian dairy cattleHaile-Mariam, M., Pryce, J. E., Schrooten, C. and Hayes, B. J. (2015). Including overseas performance information in genomic evaluations of Australian dairy cattle. Journal of Dairy Science, 98 (5), 3443-3459. doi: 10.3168/jds.2014-8785 |
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2015 Journal Article A computationally efficient algorithm for genomic prediction using a Bayesian modelWang, Tingting, Chen, Yi-Ping Phoebe, Goddard, Michael E., Meuwissen, Theo H. E., Kemper, Kathryn E. and Hayes, Ben J. (2015). A computationally efficient algorithm for genomic prediction using a Bayesian model. Genetics Selection Evolution, 47 (1) 82. doi: 10.1186/s12711-014-0082-4 |
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2015 Journal Article Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictionsKemper, Kathryn E., Reich, Coralie M., Bowman, Philip J., vander Jagt, Christy J., Chamberlain, Amanda J., Mason, Brett A., Hayes, Benjamin J. and Goddard, Michael E. (2015). Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions. Genetics Selection Evolution, 47 (1) 29. doi: 10.1186/s12711-014-0074-4 |
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2015 Journal Article Simultaneous discovery, estimation and prediction analysis of complex traits using a bayesian mixture modelMoser, Gerhard, Lee, Sang Hong, Hayes, Ben J., Goddard, Michael E., Wray, Naomi R. and Visscher, Peter M. (2015). Simultaneous discovery, estimation and prediction analysis of complex traits using a bayesian mixture model. PLoS Genetics, 11 (4) e1004969, 1-22. doi: 10.1371/journal.pgen.1004969 |
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2015 Journal Article Non-additive genetic variation in growth, carcass and fertility traits of beef cattleBolormaa, Sunduimijid, Pryce, Jennie E., Zhang, Yuandan, Reverter, Antonio, Barendse, William, Hayes, Ben J. and Goddard, Michael E. (2015). Non-additive genetic variation in growth, carcass and fertility traits of beef cattle. Genetics Selection Evolution, 47 (1) 26. doi: 10.1186/s12711-015-0114-8 |
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2015 Journal Article How old are quantitative trait loci and how widely do they segregate?Kemper, K. E., Hayes, B. J., Daetwyler, H. D. and Goddard, M. E. (2015). How old are quantitative trait loci and how widely do they segregate?. Journal of Animal Breeding and Genetics, 132 (2), 121-134. doi: 10.1111/jbg.12152 |
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2015 Journal Article Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes projectAndersson, Leif, Archibald, Alan L., Bottema, Cynthia D., Brauning, Rudiger, Burgess, Shane C., Burt, Dave W., Casas, Eduardo, Cheng, Hans H., Clarke, Laura, Couldrey, Christine, Dalrymple, Brian P., Elsik, Christine G., Foissac, Sylvain, Giuffra, Elisabetta, Groenen, Martien A., Hayes, Ben J., Huang, LuSheng S., Khatib, Hassan, Kijas, James W., Kim, Heebal, Lunney, Joan K., McCarthy, Fiona M., McEwan, John C., Nanduri, Bindu, Notredame, Cedric, Palti, Yniv, Plastow, Graham S., Reecy, James M., Rohrer, Gary A. ... Fortes, Marina (2015). Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology, 16 (1) 57, 1-6. doi: 10.1186/s13059-015-0622-4 |
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2015 Journal Article Characterizing homozygosity across United States, New Zealand and Australian Jersey cow and bull populationsHoward, Jeremy T., Maltecca, Christian, Haile-Mariam, Mekonnen, Hayes, Ben J. and Pryce, Jennie E. (2015). Characterizing homozygosity across United States, New Zealand and Australian Jersey cow and bull populations. BMC Genomics, 16 (1) 187. doi: 10.1186/s12864-015-1352-4 |
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2014 Journal Article Detection of chromosome segments of zebu and taurine origin and their effect on beef production and growthBolormaa, S., Hayes, B. J., Hawken, R. J., Zhang, Y., Reverter, A. and Goddard, M. E. (2014). Detection of chromosome segments of zebu and taurine origin and their effect on beef production and growth. Journal of Animal Science, 89 (7), 2050-2060. doi: 10.2527/jas.2010-3363 |
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2014 Journal Article Genome-wide association studies for feedlot and growth traits in cattleBolormaa, S., Hayes, B. J., Savin, K., Hawken, R., Barendse, W., Arthur, P. F., Herd, R. M. and Goddard, M. E. (2014). Genome-wide association studies for feedlot and growth traits in cattle. Journal of Animal Science, 89 (6), 1684-1697. doi: 10.2527/jas.2010-3079 |
