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2013 Journal Article Accuracy of prediction of genomic breeding values for residual feed intake and carcass and meat quality traits in Bos taurus, Bos indicus, and composite beef cattleBolormaa, S., Pryce, J. E., Kemper, K., Savin, K., Hayes, B. J., Barendse, W., Zhang, Y., Reich, C. M., Mason, B. A., Bunch, R. J., Harrison, B. E., Reverter, A., Herd, R. M., Tier, B., Graser, H. -U. and Goddard, M. E. (2013). Accuracy of prediction of genomic breeding values for residual feed intake and carcass and meat quality traits in Bos taurus, Bos indicus, and composite beef cattle. Journal of Animal Science, 91 (7), 3088-3104. doi: 10.2527/jas.2012-5827 |
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2013 Journal Article PrefaceGondro, Cedric, Van Der Werf, Julius and Hayes, Ben (2013). Preface. Methods in Molecular Biology, 1019. doi: 10.1007/978-1-62703-447_0 |
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2012 Journal Article Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validationDaetwyler, Hans D., Swan, Andrew A., van der Werf, Julius H. J. and Hayes, Ben J. (2012). Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation. Genetics Selection Evolution, 44 (1) 33. doi: 10.1186/1297-9686-44-33 |
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2012 Journal Article Genome position specific priors for genomic predictionBrondum, Rasmus Froberg, Su, Guosheng, Lund, Mogens Sando, Bowman, Philip J., Goddard, Michael E. and Hayes, Benjamin J. (2012). Genome position specific priors for genomic prediction. BMC Genomics, 13 (1) 543. doi: 10.1186/1471-2164-13-543 |
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2012 Journal Article Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattleKhatkar, Mehar S., Moser, Gerhard, Hayes, Ben J. and Raadsma, Herman W. (2012). Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle. BMC Genomics, 13 (1) 538, 1-12. doi: 10.1186/1471-2164-13-538 |
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2012 Journal Article Improved accuracy of genomic prediction for dry matter intake of dairy cattle from combined European and Australian data setsde Haas, Y., Calus, M. P. L., Veerkamp, R. F., Wall, E., Coffey, M. P., Daetwyler, H. D., Hayes, B. J. and Pryce, J. E. (2012). Improved accuracy of genomic prediction for dry matter intake of dairy cattle from combined European and Australian data sets. Journal of Dairy Science, 95 (10), 6103-6112. doi: 10.3168/jds.2011-5280 |
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2012 Journal Article Long-term selection strategies for complex traits using high-density genetic markersKemper, K. E., Bowman, R. J., Pryce, J. E., Hayes, B. J. and Goddard, M. E. (2012). Long-term selection strategies for complex traits using high-density genetic markers. Journal of Dairy Science, 95 (8), 4646-4656. doi: 10.3168/jds.2011-5289 |
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2012 Journal Article A single nucleotide polymorphism on chromosome 10 is highly predictive for the polled phenotype in Australian Merino sheepDominik, S., Henshall, J. M. and Hayes, B. J. (2012). A single nucleotide polymorphism on chromosome 10 is highly predictive for the polled phenotype in Australian Merino sheep. Animal Genetics, 43 (4), 468-470. doi: 10.1111/j.1365-2052.2011.02271.x |
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2012 Journal Article High throughput whole rumen metagenome profiling using untargeted massively parallel sequencingRoss, Elizabeth M., Moate, Peter J., Bath, Carolyn R., Davidson, Sophie E., Sawbridge, Tim I., Guthridge, Kathryn M., Cocks, Ben G. and Hayes, Ben J. (2012). High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing. BMC Genetics, 13 53. doi: 10.1186/1471-2156-13-53 |
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2012 Journal Article Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panelsErbe, M., Hayes, B. J., Matukumalli, L. K., Goswami, S., Bowman, P. J., Reich, C. M., Mason, B. A. and Goddard, M. E. (2012). Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels. Journal of Dairy Science, 95 (7), 4114-4129. doi: 10.3168/jds.2011-5019 |
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2012 Journal Article Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattleLarkin, Denis M., Daetwyler, Hans D., Hernandez, Alvaro G., Wright, Chris L., Hetrick, Lorie A., Boucek, Lisa, Bachman, Sharon L., Band, Mark R., Akraiko, Tatsiana V., Cohen-Zinder, Miri, Thimmapuram, Jyothi, Macleod, Iona M., Harkins, Timothy T., McCague, Jennifer E., Goddard, Michael E., Hayes, Ben J. and Lewin, Harris A. (2012). Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle. Proceedings of the National Academy of Sciences of the United States of America, 109 (20), 7693-7698. doi: 10.1073/pnas.1114546109 |
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2012 Journal Article Discovery and trait association of single nucleotide polymorphisms from gene regions of influence on meat tenderness and long-chain omega-3 fatty acid content in Australian lambKnight, M. I., Daetwyler, H. D., Hayes, B. J., Hayden, M. J., Ball, A. J., Pethick, D. W. and McDonagh, M. B. (2012). Discovery and trait association of single nucleotide polymorphisms from gene regions of influence on meat tenderness and long-chain omega-3 fatty acid content in Australian lamb. Animal Production Science, 52 (7), 591-600. doi: 10.1071/AN11229 |
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2012 Journal Article Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markersPryce, J. E., Arias, J., Bowman, P. J., Davis, S. R., Macdonald, K. A., Waghorn, G. C., Wales, W. J., Williams, Y. J., Spelman, R. J. and Hayes, B. J. (2012). Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markers. Journal of Dairy Science, 95 (4), 2108-2119. doi: 10.3168/jds.2011-4628 |
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2012 Journal Article Design of a bovine low-density snp array optimized for imputationBoichard, Didier, Chung, Hoyoung, Dassonneville, Romain, David, Xavier, Eggen, Andre, Fritz, Sebastien, Gietzen, Kimberly J., Hayes, Ben J., Lawley, Cynthia T., Sonstegard, Tad S., Van Tassell, Curtis P., VanRaden, Paul M., Viaud-Martinez, Karine A. and Wiggans, George R. (2012). Design of a bovine low-density snp array optimized for imputation. PLoS One, 7 (3) e34130, e34130. doi: 10.1371/journal.pone.0034130 |
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2012 Journal Article A review of how dairy farmers can use and profit from genomic technologiesPryce, Jennie and Hayes, Ben (2012). A review of how dairy farmers can use and profit from genomic technologies. Animal Production Science, 52 (3), 180-184. doi: 10.1071/AN11172 |
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2012 Journal Article Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flockWhite, Jason D., Allingham, Peter G., Gorman, Chris M., Emery, David L., Hynd, Philip, Owens, John, Bell, Amy, Siddell, Jason, Harper, Greg, Hayes, Ben J., Daetwyler, Hans D., Usmar, Jonathan, Goddard, Mike E., Henshall, John M., Dominik, Sonja, Brewer, Heather, van der Werf, Julius H. J., Nicholas, Frank W., Warner, Robyn, Hofmyer, Chris, Longhurst, Terry, Fisher, Troy, Swan, Paul, Forage, Rob and Oddy, V. Hutton (2012). Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock. Animal Production Science, 52 (2-3), 157-171. doi: 10.1071/AN11085 |
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2012 Journal Article Components of the accuracy of genomic prediction in a multi-breed sheep populationDaetwyler, H. D., Kemper, K. E., van der Werf, J. H. J. and Hayes, B. J. (2012). Components of the accuracy of genomic prediction in a multi-breed sheep population. Journal of Animal Science, 90 (10), 3375-3384. doi: 10.2527/jas.2011-4557 |
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2012 Journal Article Validation of single nucleotide polymorphisms associated with milk production traits in dairy cattleChamberlain, A. J., Hayes, B. J., Savin, K., Bolormaa, S., McPartlan, H. C., Bowman, P. J., Van der Jagt, C., MacEachern, S. and Goddard, M. E. (2012). Validation of single nucleotide polymorphisms associated with milk production traits in dairy cattle. Journal of Dairy Science, 95 (2), 864-875. doi: 10.3168/jds.2010-3786 |
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2012 Journal Article Accuracy of genotype imputation in sheep breedsHayes, B. J., Bowman, P. J., Daetwyler, H. D., Kijas, J. W. and van der Werf, J. H. J. (2012). Accuracy of genotype imputation in sheep breeds. Animal Genetics, 43 (1), 72-80. doi: 10.1111/j.1365-2052.2011.02208.x |
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2012 Journal Article Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent SelectionKijas, James W., Lenstra, Johannes A., Hayes, Ben, Boitard, Simon, Neto, Laercio R. Porto, San Cristobal, Magali, Servin, Bertrand, McCulloch, Russell, Whan, Vicki, Gietzen, Kimberly, Paiva, Samuel, Barendse, William, Ciani, Elena, Raadsma, Herman, McEwan, John, Dalrymple, Brian and Int Sheep Genomics Consortium (2012). Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection. PLoS Biology, 10 (2) e1001258, e1001258. doi: 10.1371/journal.pbio.1001258 |
