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2025 Journal Article Cre-Lox miRNA-delivery technology optimized for inducible microRNA and gene-silencing studies in zebrafishGuo, Fangfei, Tromp, Alisha, Wang, Haitao, Hall, Thomas E and Giacomotto, Jean (2025). Cre-Lox miRNA-delivery technology optimized for inducible microRNA and gene-silencing studies in zebrafish. Nucleic Acids Research, 53 (2) gkaf004, 2. doi: 10.1093/nar/gkaf004 |
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2024 Journal Article Atrogin-1 promotes muscle homeostasis by regulating levels of endoplasmic reticulum chaperone BiPRuparelia, Avnika A., Montandon, Margo, Merriner, Jo, Huang, Cheng, Wong, Siew Fen Lisa, Sonntag, Carmen, Hardee, Justin P., Lynch, Gordon S., Miles, Lee B., Siegel, Ashley, Hall, Thomas E., Schittenhelm, Ralf B. and Currie, Peter D. (2024). Atrogin-1 promotes muscle homeostasis by regulating levels of endoplasmic reticulum chaperone BiP. JCI Insight, 9 (8) e167578, 1-20. doi: 10.1172/jci.insight.167578 |
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2024 Journal Article Corrigendum: KBTBD13 is an actin-binding protein that modulates muscle kineticsde Winter, Josine M., Molenaar, Joery P., Yuen, Michaela, van der Pijl, Robbert, Shen, Shengyi, Conijn, Stefan, van de Locht, Martijn, Willigenburg, Menne, Bogaards, Sylvia J.P., van Kleef, Esmee S.B., Lassche, Saskia, Persson, Malin, Rassier, Dilson E., Sztal, Tamar E., Ruparelia, Avnika A., Oorschot, Viola, Ramm, Georg, Hall, Thomas E., Xiong, Zherui, Johnson, Christopher N., Li, Frank, Kiss, Balazs, Lozano-Vidal, Noelia, Boon, Reinier A., Marabita, Manuela, Nogara, Leonardo, Blaauw, Bert, Rodenburg, Richard J., Küsters, Benno ... Ottenheijm, Coen A.C. (2024). Corrigendum: KBTBD13 is an actin-binding protein that modulates muscle kinetics. Journal of Clinical Investigation, 134 (3). doi: 10.1172/jci179111 |
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2023 Journal Article Cell surface plasticity in response to shape change in the whole organismHall, Thomas E., Ariotti, Nicholas, Lo, Harriet P., Rae, James, Ferguson, Charles, Martel, Nick, Lim, Ye-Wheen, Giacomotto, Jean and Parton, Robert G. (2023). Cell surface plasticity in response to shape change in the whole organism. Current Biology, 33 (19), 4276-4284. doi: 10.1016/j.cub.2023.08.068 |
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2023 Journal Article Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelinesTromp, Alisha, Wang, Haitao, Hall, Thomas E., Mowry, Bryan and Giacomotto, Jean (2023). Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelines. Frontiers in Physiology, 14 1221310, 1-10. doi: 10.3389/fphys.2023.1221310 |
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2023 Journal Article Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2Wu, Yeping, Lim, Ye-Wheen, Stroud, David A., Martel, Nick, Hall, Thomas E., Lo, Harriet P., Ferguson, Charles, Ryan, Michael T., McMahon, Kerrie-Ann and Parton, Robert G. (2023). Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2. Developmental Cell, 58 (5), 376-397.e4. doi: 10.1016/j.devcel.2023.02.004 |
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2023 Journal Article ahctf1 and kras mutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinomaMorgan, Kimberly J., Doggett, Karen, Geng, Fansuo, Mieruszynski, Stephen, Whitehead, Lachlan, Smith, Kelly A., Hogan, Benjamin M., Simons, Cas, Baillie, Gregory J., Molania, Ramyar, Papenfuss, Anthony T., Hall, Thomas E., Ober, Elke A., Stainier, Didier Y.R., Gong, Zhiyuan and Heath, Joan Kathleen (2023). ahctf1 and kras mutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinoma. eLife, 12 e73407, 1-28. doi: 10.7554/elife.73407 |
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2021 Journal Article Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscleLo, Harriet P., Lim, Ye-Wheen, Xiong, Zherui, Martel, Nick, Ferguson, Charles, Ariotti, Nicholas, Giacomotto, Jean, Rae, James, Floetenmeyer, Matthias, Moradi, Shayli Varasteh, Gao, Ya, Tillu, Vikas A., Xia, Di, Wang, Huang, Rahnama, Samira, Nixon, Susan J., Bastiani, Michele, Day, Ryan D., Smith, Kelly A., Palpant, Nathan J., Johnston, Wayne A., Alexandrov, Kirill, Collins, Brett M., Hall, Thomas E. and Parton, Robert G. (2021). Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscle. Journal of Cell Biology, 220 (12) e201905065. doi: 10.1083/jcb.201905065 |
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2021 Journal Article Proximity dependent biotin labelling in zebrafish for proteome and interactome profilingXiong, Zherui, Lo, Harriet P., McMahon, Kerrie-Ann, Parton, Robert G. and Hall, Thomas E. (2021). Proximity dependent biotin labelling in zebrafish for proteome and interactome profiling. Bio-protocol, 11 (19) e4178, e4178. doi: 10.21769/BIOPROTOC.4178 |
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2021 Journal Article Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisionsTromp, Alisha, Robinson, Kate, Hall, Thomas E., Mowry, Bryan and Giacomotto, Jean (2021). Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisions. G3 Genes|Genomes|Genetics, 11 (12) jkab321. doi: 10.1093/g3journal/jkab321 |
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2021 Journal Article Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress responseMcMahon, Kerrie-Ann, Stroud, David A., Gambin, Yann, Tillu, Vikas, Bastiani, Michele, Sierecki, Emma, Polinkovsky, Mark E., Hall, Thomas E., Gomez, Guillermo A., Wu, Yeping, Parat, Marie-Odile, Martel, Nick, Lo, Harriet P., Khanna, Kum Kum, Alexandrov, Kirill, Daly, Roger, Yap, Alpha, Ryan, Michael T. and Parton, Robert G. (2021). Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress response. eLife, 10 e61407, 1-35. doi: 10.7554/elife.61407 |
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2021 Journal Article A robust method for particulate detection of a genetic tag for 3D electron microscopyRae, James, Ferguson, Charles, Ariotti, Nicholas, Webb, Richard I., Cheng, Han-Hao, Mead, James L., Riches, James D., Hunter, Dominic J.B., Martel, Nick, Baltos, Joanne, Christopoulos, Arthur, Bryce, Nicole S., Cagigas, Maria Lastra, Fonseka, Sachini, Sayre, Marcel E., Hardeman, Edna C., Gunning, Peter W., Gambin, Yann, Hall, Thomas E. and Parton, Robert G. (2021). A robust method for particulate detection of a genetic tag for 3D electron microscopy. eLife, 10 e64630, 1-17. doi: 10.7554/eLife.64630 |
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2021 Journal Article In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafishXiong, Zherui, Lo, Harriet P., McMahon, Kerrie-Ann, Martel, Nick, Jones, Alun, Hill, Michelle M., Parton, Robert G. and Hall, Thomas E. (2021). In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish. eLife, 10 e64631, 1-21. doi: 10.7554/elife.64631 |
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2021 Journal Article Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusionDuszyc, Kinga, Gomez, Guillermo A., Lagendijk, Anne K., Yau, Mei-Kwan, Nanavati, Bageshri Naimish, Gliddon, Briony L., Hall, Thomas E., Verma, Suzie, Hogan, Benjamin M., Pitson, Stuart M., Fairlie, David P., Parton, Robert G. and Yap, Alpha S. (2021). Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusion. Current Biology, 31 (6), 1326-1336.e5. doi: 10.1016/j.cub.2021.01.003 |
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2021 Journal Article In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS)Don, Emily K., Maschirow, Alina, Radford, Rowan A. W., Scherer, Natalie M., Vidal-Itriago, Andrés, Hogan, Alison, Maurel, Cindy, Formella, Isabel, Stoddart, Jack J., Hall, Thomas E., Lee, Albert, Shi, Bingyang, Cole, Nicholas J., Laird, Angela S., Badrock, Andrew P., Chung, Roger S. and Morsch, Marco (2021). In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS). Molecular Neurobiology, 58 (5), 2061-2074. doi: 10.1007/s12035-020-02238-0 |
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2020 Journal Article Src kinases relax adherens junctions between the neighbors of apoptotic cells to permit apical extrusionTeo, Jessica L, Tomatis, Vanesa M, Coburn, Luke, Lagendijk, Anne K, Schouwenaar, Irin-Maya, Budnar, Srikanth, Hall, Thomas E, Verma, Suzie, McLachlan, Robert W, Hogan, Benjamin M, Parton, Robert G, Yap, Alpha S and Gomez, Guillermo A (2020). Src kinases relax adherens junctions between the neighbors of apoptotic cells to permit apical extrusion. Molecular Biology of the Cell, 31 (23), 2495-2629. doi: 10.1091/mbc.E20-01-0084 |
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2020 Journal Article In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formationHall, Thomas E., Martel, Nick, Ariotti, Nicholas, Xiong, Zherui, Lo, Harriet P., Ferguson, Charles, Rae, James, Lim, Ye-Wheen and Parton, Robert G. (2020). In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formation. Nature Communications, 11 (1) 3711, 3711. doi: 10.1038/s41467-020-17486-w |
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2019 Journal Article Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1AHall, T. E., Wood, A. J., Ehrlich, O., Li, M., Sonntag, C. S., Cole, N. J., Huttner, I. G., Sztal, T. E. and Currie, P. D. (2019). Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1A. Npj Regenerative Medicine, 4 (1) 21, 21. doi: 10.1038/s41536-019-0084-5 |
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2019 Journal Article KBTBD13 is an actin-binding protein that modulates muscle kineticsde Winter, Josine M., Molenaar, Joery P., Yuen, Michaela, van der Pijl, Robbert, Shen, Shengyi, Conijn, Stefan, van de Locht, Martijn, Willigenburg, Menne, Bogaards, Sylvia J.P., van Kleef, Esmee S.B., Lassche, Saskia, Persson, Malin, Rassier, Dilson E., Sztal, Tamar E., Ruparelia, Avnika A., Oorschot, Viola, Ramm, Georg, Hall, Thomas E., Xiong, Zherui, Johnson, Christopher N., Li, Frank, Kiss, Balazs, Lozano-Vidal, Noelia, Boon, Reinier A., Marabita, Manuela, Nogara, Leonardo, Blaauw, Bert, Rodenburg, Richard J., Kϋsters, Benno ... Ottenheijm, Coen A.C. (2019). KBTBD13 is an actin-binding protein that modulates muscle kinetics. Journal of Clinical Investigation, 130 (2), 754-767. doi: 10.1172/jci124000 |
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2019 Journal Article Identification of intracellular cavin target proteins reveals cavin-PP1alpha interactions regulate apoptosisMcMahon, Kerrie-Ann, Wu, Yeping, Gambin, Yann, Sierecki, Emma, Tillu, Vikas A., Hall, Thomas, Martel, Nick, Okano, Satomi, Moradi, Shayli Varasteh, Ruelcke, Jayde E., Ferguson, Charles, Yap, Alpha S., Alexandrov, Kirill, Hill, Michelle M. and Parton, Robert G. (2019). Identification of intracellular cavin target proteins reveals cavin-PP1alpha interactions regulate apoptosis. Nature Communications, 10 (1) 3279, 3279. doi: 10.1038/s41467-019-11111-1 |
