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Professor Esteban Marcellin
Professor

Esteban Marcellin

Email: 
Phone: 
+61 7 334 64298

Overview

Availability

Professor Esteban Marcellin is:
Available for supervision

Qualifications

  • Bachelor (Honours) of Chemical Engineering, unknown
  • Doctor of Philosophy, The University of Queensland

Research interests

  • Systems and Synthetic Biology

    Systems and synthetic biology are powerful tools to guide the improvement of biological systems for producing fuels, chemicals, foods and biopharmaceuticals. Systems and synthetic approaches can be used to identify metabolic engineering targets and develop new production strains. Using data-driven approaches that take advantage of the tremendous growth in high throughput ‘-omics (genomics, transcriptomics, proteomics and metabolomics) coupled with mathematical models we can better understand cells. The data gathered can be used to suggest potential metabolic engineering strategies (e.g. bottlenecks that can be targeted for knockout/up-regulation) to improve yields and productivity. Biological systems are refined and improved using biological data, leading to further iterative rounds of metabolic engineering to enhance production. Using gas fermentation, we are consuming greenhouse gases (CO and CO2) as feedstock for fermentation and converting those greenhouse gases into valuable fuels, chemicals and fuels. This allows us to decrease our dependence on finite fossil fuel resources and improves sustainability for Australia. Our projects aim at producing efficient cell lines to increase the yields and productivity of biological systems. In collaboration with leaders in the industry, such as Lanzatech, Amyris, Zoetis, Dow, CSL and Thermo-Fisher, we are applying systems metabolic engineering to enhance yields and increase the production scope of the advanced biomanufacturing sector.

Works

Search Professor Esteban Marcellin’s works on UQ eSpace

142 works between 2007 and 2025

1 - 20 of 142 works

2025

Journal Article

Isolation of an exopolysaccharide-producing Weissella confusa strain from lettuce and exploring its application as a texture modifying adjunct culture in a soy milk alternative

Huang, Wenkang, Yang, Shuyu, Wätjen, Anders Peter, Gumulya, Yosephine, Fernández-Pacheco, Pilar, Marcellin, Esteban, Prakash, Sangeeta, Bang-Berthelsen, Claus Heiner and Turner, Mark S. (2025). Isolation of an exopolysaccharide-producing Weissella confusa strain from lettuce and exploring its application as a texture modifying adjunct culture in a soy milk alternative. International Journal of Food Microbiology, 428 110992, 110992. doi: 10.1016/j.ijfoodmicro.2024.110992

Isolation of an exopolysaccharide-producing Weissella confusa strain from lettuce and exploring its application as a texture modifying adjunct culture in a soy milk alternative

2024

Journal Article

Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustness

Ingelman, Henri, Heffernan, James K., Harris, Audrey, Brown, Steven D., Shaikh, Kurshedaktar Majibullah, Saqib, Asfand Yar, Pinheiro, Marina J., de Lima, Lorena Azevedo, Rodriguez Martinez, Karen, Gonzalez-Garcia, Ricardo A., Hawkins, Grant, Daleiden, Jim, Tran, Loan, Zeleznik, Hunter, Jensen, Rasmus O., Reynoso, Vinicio, Schindel, Heidi, Jänes, Jürgen, Simpson, Séan D., Köpke, Michael, Marcellin, Esteban and Valgepea, Kaspar (2024). Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustness. New Biotechnology, 83, 1-15. doi: 10.1016/j.nbt.2024.06.002

Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustness

2024

Book Chapter

Protein Identification and Binding Capacity of Pseudomonas putida to Critical Media

Webster, Luke J., Palfreyman, Robin, Gillane, Rosemary, Soto, Fernanda, Marcellin, Esteban and Villa-Gomez, Denys (2024). Protein Identification and Binding Capacity of Pseudomonas putida to Critical Media. Proceedings of the 63rd Conference of Metallurgists, COM 2024. (pp. 1185-1188) Cham: Springer Nature Switzerland. doi: 10.1007/978-3-031-67398-6_202

Protein Identification and Binding Capacity of Pseudomonas putida to Critical Media

2024

Journal Article

Biosynthesis of novel non-proteinogenic amino acids β-hydroxyenduracididine and β-methylphenylalanine in Escherichia coli

Gillane, Rosemary, Daygon, Dara, Khalil, Zeinab G. and Marcellin, Esteban (2024). Biosynthesis of novel non-proteinogenic amino acids β-hydroxyenduracididine and β-methylphenylalanine in Escherichia coli. Frontiers in Bioengineering and Biotechnology, 12 1468974, 1-11. doi: 10.3389/fbioe.2024.1468974

Biosynthesis of novel non-proteinogenic amino acids β-hydroxyenduracididine and β-methylphenylalanine in Escherichia coli

2024

Conference Publication

Understanding the sensory gap between no and low alcohol (NOLO) wine and traditional wine

Li, Huanhuan, Bekker, Marlize, Rudge, Raisa, Marcellin, Esteban and Smyth, Heather (2024). Understanding the sensory gap between no and low alcohol (NOLO) wine and traditional wine. Crush 2024, Adelaide, SA Australia, 25 - 26 September 2024.

Understanding the sensory gap between no and low alcohol (NOLO) wine and traditional wine

2024

Conference Publication

Understanding the sensory gap between no and low alcohol (NOLO) wine and traditional wine

Li, Huanhuan, Bekker, Marlize, Rudge, Raisa, Marcellin, Esteban and Smyth, Heather (2024). Understanding the sensory gap between no and low alcohol (NOLO) wine and traditional wine. QSA NextGen Ag Symposium 2024, Brisbane, QLD Australia, 6 September 2024.

Understanding the sensory gap between no and low alcohol (NOLO) wine and traditional wine

2024

Journal Article

Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterations

Heffernan, James, Garcia Gonzalez, R. Axayactl, Mahamkali, Vishnu, McCubbin, Tim, Daygon, Dara, Liu, Lian, Palfreyman, Robin, Harris, Audrey, Koepke, Michael, Valgepea, Kaspar, Nielsen, Lars Keld and Marcellin, Esteban (2024). Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterations. Microbial Biotechnology, 17 (4) e14452, e14452. doi: 10.1111/1751-7915.14452

Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO2 and H2 enhances growth rates in chemostat and unravels proteome and metabolome alterations

2024

Journal Article

Harnessing metabolic plasticity in CHO cells for enhanced perfusion cultivation

Nöbel, Matthias, Barry, Craig, MacDonald, Michael A., Baker, Kym, Shave, Evan, Mahler, Stephen, Munro, Trent, Martínez, Verónica S., Nielsen, Lars K. and Marcellin, Esteban (2024). Harnessing metabolic plasticity in CHO cells for enhanced perfusion cultivation. Biotechnology and Bioengineering, 121 (4), 1371-1383. doi: 10.1002/bit.28613

Harnessing metabolic plasticity in CHO cells for enhanced perfusion cultivation

2024

Journal Article

A universal molecular control for DNA, mRNA and protein expression

Gunter, Helen M., Youlten, Scott E., Reis, Andre L. M., McCubbin, Tim, Madala, Bindu Swapna, Wong, Ted, Stevanovski, Igor, Cipponi, Arcadi, Deveson, Ira W., Santini, Nadia S., Kummerfeld, Sarah, Croucher, Peter I., Marcellin, Esteban and Mercer, Tim R. (2024). A universal molecular control for DNA, mRNA and protein expression. Nature Communications, 15 (1) 2480, 1-13. doi: 10.1038/s41467-024-46456-9

A universal molecular control for DNA, mRNA and protein expression

2024

Conference Publication

CO(2)-metabolism: quantifying mixed carbon oxide and hydrogen gas fermentation by Clostridium autoethanogenum

Heffernan, James K., Gonzalez-Garcia, R. Axayactl, McCubbin, Timothy, Köpke, Michael, Valgepea, Kaspar, Nielsen, Lars K. and Marcellin, Esteban (2024). CO(2)-metabolism: quantifying mixed carbon oxide and hydrogen gas fermentation by Clostridium autoethanogenum. Gas fermentation conference 2024, Gladstone, QLD Australia, 21-25 February 2024.

CO(2)-metabolism: quantifying mixed carbon oxide and hydrogen gas fermentation by Clostridium autoethanogenum

2024

Conference Publication

Protein identification for binding of critical elements in bauxite residue

Webster, Luke, Marcellin, Esteban and Villa-Gomez, Denys (2024). Protein identification for binding of critical elements in bauxite residue. Australian Mine Waste Symposium Abstracts, Brisbane, QLD Australia, 6-7 February 2024. Brisbane, QLD Australia: Sustainable Minerals Institute.

Protein identification for binding of critical elements in bauxite residue

2024

Journal Article

Quantitative subcellular reconstruction reveals a lipid mediated inter-organelle biogenesis network

Lee, Richard G., Rudler, Danielle L., Raven, Samuel A., Peng, Liuyu, Chopin, Anaelle, Moh, Edward S. X., McCubbin, Tim, Siira, Stefan J., Fagan, Samuel V., Debono, Nicholas J., Stentenbach, Maike, Browne, Jasmin, Rackham, Filip F., Li, Ji, Simpson, Kaylene J., Marcellin, Esteban, Packer, Nicolle H., Reid, Gavin E., Padman, Benjamin S., Rackham, Oliver and Filipovska, Aleksandra (2024). Quantitative subcellular reconstruction reveals a lipid mediated inter-organelle biogenesis network. Nature Cell Biology, 26 (1), 57-71+. doi: 10.1038/s41556-023-01297-4

Quantitative subcellular reconstruction reveals a lipid mediated inter-organelle biogenesis network

2023

Journal Article

An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter

Casini, Isabella, McCubbin, Tim, Esquivel-Elizondo, Sofia, Luque, Guillermo G., Evseeva, Daria, Fink, Christian, Beblawy, Sebastian, Youngblut, Nicholas D., Aristilde, Ludmilla, Huson, Daniel H., Dräger, Andreas, Ley, Ruth E., Marcellin, Esteban, Angenent, Largus T. and Molitor, Bastian (2023). An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter. iScience, 26 (10) 108016, 1-26. doi: 10.1016/j.isci.2023.108016

An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter

2023

Journal Article

mRNA vaccine quality analysis using RNA sequencing

Gunter, Helen M., Idrisoglu, Senel, Singh, Swati, Han, Dae Jong, Ariens, Emily, Peters, Jonathan R., Wong, Ted, Cheetham, Seth W., Xu, Jun, Rai, Subash Kumar, Feldman, Robert, Herbert, Andy, Marcellin, Esteban, Tropee, Romain, Munro, Trent and Mercer, Tim R. (2023). mRNA vaccine quality analysis using RNA sequencing. Nature Communications, 14 (1) 5663, 1-12. doi: 10.1038/s41467-023-41354-y

mRNA vaccine quality analysis using RNA sequencing

2023

Journal Article

Salinity effect on an anaerobic methane- and ammonium-oxidising consortium: shifts in activity, morphology, osmoregulation and syntrophic relationship

Frank, Joshua, Zhang, Xueqin, Marcellin, Esteban, Yuan, Zhiguo and Hu, Shihu (2023). Salinity effect on an anaerobic methane- and ammonium-oxidising consortium: shifts in activity, morphology, osmoregulation and syntrophic relationship. Water Research, 242 120090, 120090. doi: 10.1016/j.watres.2023.120090

Salinity effect on an anaerobic methane- and ammonium-oxidising consortium: shifts in activity, morphology, osmoregulation and syntrophic relationship

2023

Journal Article

Tuning flow-through cu-based hollow fiber gas-diffusion electrode for high-efficiency carbon monoxide (CO) electroreduction to C2+products

Rabiee, Hesamoddin, Heffernan, James K., Ge, Lei, Zhang, Xueqin, Yan, Penghui, Marcellin, Esteban, Hu, Shihu, Zhu, Zhonghua, Wang, Hao and Yuan, Zhiguo (2023). Tuning flow-through cu-based hollow fiber gas-diffusion electrode for high-efficiency carbon monoxide (CO) electroreduction to C2+products. Applied Catalysis B: Environmental, 330 122589, 122589. doi: 10.1016/j.apcatb.2023.122589

Tuning flow-through cu-based hollow fiber gas-diffusion electrode for high-efficiency carbon monoxide (CO) electroreduction to C2+products

2023

Journal Article

Characterisation of acetogen formatotrophic potential using Eubacterium limosum

Wood, Jamin C., Gonzalez-Garcia, R. Axayacatl, Daygon, Dara, Talbo, Gert, Plan, Manuel R., Marcellin, Esteban and Virdis, Bernardino (2023). Characterisation of acetogen formatotrophic potential using Eubacterium limosum. Applied Microbiology and Biotechnology, 107 (14), 4507-4518. doi: 10.1007/s00253-023-12600-6

Characterisation of acetogen formatotrophic potential using Eubacterium limosum

2023

Journal Article

Cyclic-di-AMP signalling in lactic acid bacteria

Turner, Mark S., Xiang, Yuwei, Liang, Zhao-Xun, Marcellin, Esteban and Pham, Huong Thi (2023). Cyclic-di-AMP signalling in lactic acid bacteria. FEMS Microbiology Reviews, 47 (3) fuad025, 1-16. doi: 10.1093/femsre/fuad025

Cyclic-di-AMP signalling in lactic acid bacteria

2023

Journal Article

Copy number variation in tRNA isodecoder genes impairs mammalian development and balanced translation

Hughes, Laetitia A., Rudler, Danielle L., Siira, Stefan J., McCubbin, Tim, Raven, Samuel A., Browne, Jasmin M., Ermer, Judith A., Rientjes, Jeanette, Rodger, Jennifer, Marcellin, Esteban, Rackham, Oliver and Filipovska, Aleksandra (2023). Copy number variation in tRNA isodecoder genes impairs mammalian development and balanced translation. Nature Communications, 14 (1) 2210, 1-19. doi: 10.1038/s41467-023-37843-9

Copy number variation in tRNA isodecoder genes impairs mammalian development and balanced translation

2023

Journal Article

Molecular understanding of Eubacterium limosum chemostat methanol metabolism

Wood, Jamin C., Gonzalez-Garcia, R. Axayacatl, Daygon, Dara, Talbo, Gert, Plan, Manuel R., Marcellin, Esteban and Virdis, Bernardino (2023). Molecular understanding of Eubacterium limosum chemostat methanol metabolism. Sustainable Energy and Fuels, 7 (10), 2397-2412. doi: 10.1039/d2se01551j

Molecular understanding of Eubacterium limosum chemostat methanol metabolism

Funding

Current funding

  • 2024 - 2027
    Production of rare sugars
    Trailblazer Universities Program
    Open grant
  • 2024 - 2028
    Integrated Design Environment for Advanced Biomanufacturing (IDEA Bio) - Bioplatforms Australia (BPA) NCRIS 2022
    Bioplatforms Australia Ltd
    Open grant
  • 2024 - 2027
    Harnessing the gut microbiome to improve stem cell transplant outcome (NHMRC Ideas 2023 Administered by The Council of the Queensland Institute of Medical Research)
    Queensland Institute of Medical Research
    Open grant
  • 2023 - 2026
    Understanding and resolving the biological bottlenecks of recombinant dairy protein production in host microorganisms
    Trailblazer Universities Program
    Open grant
  • 2023 - 2028
    Biosustainability Hub: Paving the way to net zero using biological strategies
    Woodside Energy Technologies Pty Ltd
    Open grant
  • 2023 - 2029
    ARC Research Hub for Carbon Utilisation and Recycling (ARC ITRP administered by Monash University)
    Monash University
    Open grant
  • 2023 - 2025
    Assessing the potential of engineered microbial communities to reduce nitrous oxide (N2O) emissions from agricultural soils
    Grains Research & Development Corporation
    Open grant
  • 2023 - 2028
    Queensland Metabolomics and Proteomics (Q-MAP) Facility - Bioplatforms Australia (BPA) NCRIS 2022
    Bioplatforms Australia Ltd
    Open grant
  • 2023 - 2024
    Towards decarbonized aerobic fermentation: metabolic understanding of hydrogenase activity and its utilization for bioproduction
    Universities Australia - Germany Joint Research Co-operation Scheme
    Open grant
  • 2022 - 2027
    The University of Queensland Accelerating Growth in Australia's Food and Beverage Manufacturing [F&B Accelerate; FaBA]
    Trailblazer Universities Program
    Open grant
  • 2022 - 2024
    Production of valuable chemicals from gaseous waste
    ARC Linkage Projects
    Open grant
  • 2020 - 2024
    Engineering cyanobacteria for high-value flavours and fragrances production
    ARC Linkage Projects
    Open grant
  • 2020 - 2027
    ARC Centre of Excellence in Synthetic Biology (ARC Centre of Excellence administered by Macquarie University)
    Macquarie University
    Open grant
  • 2019 - 2024
    BioPlatforms Australia (BPA) Queensland Co-Investment (RICF)
    Bioplatforms Australia Ltd
    Open grant
  • 2013 - 2024
    Bioplatforms Australia Project - Metabolomics (Commonwealth NCRIS 2013 (2013-2023) grant administered by Macquarie University via Bioplatforms Australia Ltd)
    Bioplatforms Australia Ltd
    Open grant

Past funding

  • 2022 - 2024
    Microbial conversion of greenhouse gases into high-value animal feeds (Monash University led Woodside Energy Technologies grant)
    Monash University
    Open grant
  • 2022 - 2024
    Synthetic Biology for Synthesis of Novel Polymers Used in Energy Storage
    Commonwealth Defence Science and Technology Group
    Open grant
  • 2021 - 2022
    Production of biopolymers from plastic waste
    Innovation Connections
    Open grant
  • 2019 - 2023
    Unravelling a novel stress-signalling system in bacteria
    ARC Discovery Projects
    Open grant
  • 2017 - 2020
    BiG Chem: Biological Gas-to-Chemicals
    UQ Development Fellowships
    Open grant
  • 2017 - 2023
    ARC Training Centre for Biopharmaceutical Innovation
    ARC Industrial Transformation Training Centres
    Open grant
  • 2016 - 2019
    Improving clostridial toxoid production through molecular fermentation maps
    ARC Linkage Projects
    Open grant
  • 2016
    Instrumentation for the analysis of cellular and metabolic phenotypes
    UQ Major Equipment and Infrastructure
    Open grant
  • 2015 - 2018
    Developing an integrated systems and synthetic biology platform to expand the product spectrum of acetogens
    ARC Linkage Projects
    Open grant
  • 2015
    A sensitive, high resolution QTOF mass spectrometer with nanoUPLC system for qualitative and quantitative biomolecule analysis.
    UQ Major Equipment and Infrastructure
    Open grant
  • 2015
    Building a Gas Fermentation Facility for the Production of Fuels and Chemicals
    UQ Major Equipment and Infrastructure
    Open grant
  • 2014 - 2017
    From waste to biofuels: a systems biology approach
    Queensland Government Accelerate Fellowships
    Open grant
  • 2012 - 2014
    Transforming greenhouse gases into fuels and chemicals: A systems approach
    UQ Collaboration and Industry Engagement Fund
    Open grant
  • 2012
    Reconstruction of a Genome Scale Model
    LanzaTech New Zealand Limited
    Open grant
  • 2012 - 2014
    Transforming industrial greenhouse gas emissions into useful chemicals: a systems biology approach
    UQ FirstLink Scheme
    Open grant
  • 2012 - 2016
    Clostridial Systems Biology
    Zoetis Australia Research and Manufacturing Pty Ltd
    Open grant
  • 2011 - 2012
    Elucidating the transcriptome of Saccharopolyspora erythraea using RNA-seq
    UQ Early Career Researcher
    Open grant
  • 2010 - 2011
    Sponsored Research Agreement (Microbes)
    Dow Chemical Australia Limited
    Open grant
  • 2009 - 2010
    Building a Systems Biology Platform for the Production of a Vaccine to Prevent Enterotoxaemia
    UQ FirstLink Scheme
    Open grant

Supervision

Availability

Professor Esteban Marcellin is:
Available for supervision

Before you email them, read our advice on how to contact a supervisor.

Supervision history

Current supervision

  • Doctor Philosophy

    Biological CO2 and H2 utilization for sustainable animal feed production

    Principal Advisor

    Other advisors: Professor Lars Nielsen, Dr James Heffernan

  • Doctor Philosophy

    Engineering cyanobacteria for high-value flavours and fragrances production

    Principal Advisor

  • Doctor Philosophy

    Production of the Mannopeptimycin Antibiotic and other unknown Biosynthetic Gene Clusters from Streptomyces hygroscopicus

    Principal Advisor

    Other advisors: Dr Zeinab Khalil

  • Doctor Philosophy

    Optimizing Mixed Gas Fermentation for Enhanced Biofuel Production

    Principal Advisor

    Other advisors: Dr James Heffernan

  • Doctor Philosophy

    Accelerating the design of cell lines for biologic production

    Principal Advisor

    Other advisors: Dr Marianne Gillard, Professor Timothy Mercer

  • Doctor Philosophy

    Biorecycyling carbon using acetogens

    Principal Advisor

    Other advisors: Professor Lars Nielsen, Professor Gary Schenk, Dr Axa Gonzalez, Dr James Heffernan

  • Master Philosophy

    Harnessing Microbial Power: Turning Carbon into Valuable Products through Gas Fermentation

    Principal Advisor

    Other advisors: Dr James Heffernan

  • Doctor Philosophy

    Harnessing Microbal Power: Turning Carbon into valuable Produscts through gas fermentation

    Principal Advisor

    Other advisors: Dr James Heffernan

  • Doctor Philosophy

    Profitable Upcycling of GM Biomass from Precision Fermentation

    Principal Advisor

    Other advisors: Dr Denys Villa Gomez

  • Doctor Philosophy

    Modelling cyanobacterial metabolism for the production of high-value products

    Principal Advisor

  • Doctor Philosophy

    Leveraging Biomass Waste: Exploiting Proteins from Precision Fermentation Bioprocesses

    Associate Advisor

    Other advisors: Dr Huadong Peng

  • Doctor Philosophy

    Mechanisms of osmoresistance in industrial Lactococcus cemoris

    Associate Advisor

    Other advisors: Professor Mark Turner

  • Doctor Philosophy

    Systems biology-guided cell line engineering for production of therapeutic proteins with complex post-translational modifications

    Associate Advisor

    Other advisors: Dr Lucia Zacchi, Professor Benjamin Schulz

  • Doctor Philosophy

    Advancing biofertiliser for sustainable agriculture

    Associate Advisor

    Other advisors: Professor Susanne Schmidt, Dr Axa Gonzalez

  • Doctor Philosophy

    Co-assimilation of C1 compounds (methanol, formate, formaldehyde) and components from lignocellulosic feedstock

    Associate Advisor

    Other advisors: Dr Birgitta Ebert

  • Doctor Philosophy

    Accelerating the extraction of critical metals such as rare earth elements and gallium from red mud tailings.

    Associate Advisor

    Other advisors: Dr Denys Villa Gomez

  • Doctor Philosophy

    Using synthetic biology to accelerate critical metals recovery from mine waste

    Associate Advisor

    Other advisors: Dr Denys Villa Gomez

  • Doctor Philosophy

    Influence of structurally different polysaccharides and their interactions with saliva and tannins on mouthfeel in wine

    Associate Advisor

    Other advisors: Dr Raisa Rudge, Dr Marlize Bekker, Professor Heather Smyth

  • Doctor Philosophy

    Engineering biology of yeast for sustainable fragrance production through precision fermentation

    Associate Advisor

    Other advisors: Dr Axa Gonzalez, Dr Huadong Peng

  • Doctor Philosophy

    EnzOnomy - an enzyme-based production pipeline for the bioeconomy

    Associate Advisor

    Other advisors: Professor Damian Hine, Professor Gary Schenk

Completed supervision

Media

Enquiries

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