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2024 Journal Article Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibilityMantilla Valdivieso, Emily F., Ross, Elizabeth M., Raza, Ali, Nguyen, Loan, Hayes, Ben J., Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2024). Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility. Scientific Reports, 14 (1) 4419, 1-14. doi: 10.1038/s41598-024-54577-w |
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2024 Journal Article Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysisCopley, James P., Hayes, Benjamin J., Ross, Elizabeth M., Speight, Shannon, Fordyce, Geoffry, Wood, Benjamin J. and Engle, Bailey N. (2024). Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis. Genetics Selection Evolution, 56 (1) 70. doi: 10.1186/s12711-024-00936-0 |
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2024 Conference Publication Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattleTahir, Muhammad Sajid, Goddard, Mike, Hayes, Ben, Vander Jagt, Christy, Ross, Elizabeth, Forutan, Mehrnush, Nguyen, Loan, Mason, Brett, Van den Berg, Irene, Phyn, Claire, Meier, Susanne, Bruke, Chris and Chamberlain, Amanda (2024). Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattle. PAG Australia 2024, Perth, WA, Australia, 18 - 20 September 2024. |
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2024 Journal Article Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysisOng, Chian Teng, Mody, Karishma T., Cavallaro, Antonino S., Yan, Yakun, Nguyen, Loan T., Shao, Renfu, Mitter, Neena, Mahony, Timothy J. and Ross, Elizabeth M. (2024). Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis. International Journal of Molecular Sciences, 25 (14) 7824, 1-15. doi: 10.3390/ijms25147824 |
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2024 Conference Publication Measuring HSP in tail hair as an alternative method to assess heat stress in cattleMcCosker, Kieren, Cavallaro, Tony, Lees, Angela, Sammes, Stephanie, McGowan, Michael, Gaughan, John and Ross, Elizabeth (2024). Measuring HSP in tail hair as an alternative method to assess heat stress in cattle. 35th Biennial Conference of the Australian Association of Animal Sciences and the 20th Asian - Australasian Association of Animal Production Societies, Melbourne, VIC, Australia, 8-12 July 2024. Toowong, QLD, Australia: Australian Society of Animal Production. |
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2024 Journal Article Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertilityForutan, Mehrnush, Engle, Bailey N., Chamberlain, Amanda J., Ross, Elizabeth M., Nguyen, Loan T., D’Occhio, Michael J., Snr, Alf Collins, Kho, Elise A., Fordyce, Geoffry, Speight, Shannon, Goddard, Michael E. and Hayes, Ben J. (2024). Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility. Communications Biology, 7 (1) 724, 724. doi: 10.1038/s42003-024-06403-2 |
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2024 Journal Article Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approachesChen, Chensong, Bhuiyan, Shamsul A., Ross, Elizabeth, Powell, Owen, Dinglasan, Eric, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben (2024). Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approaches. Frontiers in Plant Science, 15 1398903, 1-13. doi: 10.3389/fpls.2024.1398903 |
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2023 Journal Article Imputation strategies for genomic prediction using nanopore sequencingLamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0 |
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2023 Journal Article Use of continuous genotypes for genomic prediction in sugarcaneYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Liu, Shouye, Nguyen, Loan To, Powell, Owen, Hickey, Lee T., Deomano, Emily, Atkin, Felicity, Voss‐Fels, Kai P. and Hayes, Ben J. (2023). Use of continuous genotypes for genomic prediction in sugarcane. The Plant Genome, 17 (1) e20417, e20417. doi: 10.1002/tpg2.20417 |
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2023 Journal Article Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategiesYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P. and Hayes, Ben J. (2023). Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies. Frontiers in Plant Science, 14 1260517, 1260517. doi: 10.3389/fpls.2023.1260517 |
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2023 Journal Article Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is availableHayes, Ben J., Copley, James, Dodd, Elsie, Ross, Elizabeth M., Speight, Shannon and Fordyce, Geoffry (2023). Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is available. Genetics Selection Evolution, 55 (1) 71, 1-13. doi: 10.1186/s12711-023-00847-6 |
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2023 Journal Article Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traitsChen, Chensong, Powell, Owen, Dinglasan, Eric, Ross, Elizabeth M., Yadav, Seema, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben J. (2023). Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traits. The Plant Genome, 16 (4) e20390, 1-13. doi: 10.1002/tpg2.20390 |
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2023 Conference Publication Are production measures a good indication of pregnancy success?McCosker, Kieren, Boulton, Alana, Dekkers, Milou, Ross, Elizabeth, Hudson, Nick and Fortes, Marina (2023). Are production measures a good indication of pregnancy success?. North Australian Beef Research Update Conference, Darwin, NT Australia, 22-25 August 2023. |
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2023 Journal Article Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattleLamb, H. J., Nguyen, L. T., Briody, T. E., Ambrose, R. K., Hayes, B. J., Mahony, T. J. and Ross, E. M. (2023). Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattle. Animal Production Science, 63 (11), 1074-1085. doi: 10.1071/an22451 |
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2023 Journal Article Long-read Pore-C shows the 3D structure of the cattle genomeNguyen, Loan T., Jung, Hyungtaek, Ma, Jun, Andersen, Stacey and Ross, Elizabeth (2023). Long-read Pore-C shows the 3D structure of the cattle genome. Animal Production Science, 63 (11), 1-11. doi: 10.1071/an22479 |
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2023 Conference Publication A strategy for aggregating multi-source historical phenotypic and genotypic data sets containing homonyms for global genomic prediction in apple (Malus domestica)Edge-Garza, D., Evans, K., Ross, E. M., Jung, S., Main, D. and Hardner, C. (2023). A strategy for aggregating multi-source historical phenotypic and genotypic data sets containing homonyms for global genomic prediction in apple (Malus domestica). XXXI International Horticultural Congress (IHC2022): International Symposium on Breeding and Effective Use of Biotechnology and Molecular Tools in Horticultural Crops, Angers, France, 14-20 August 2022. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/actahortic.2023.1362.17 |
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2023 Journal Article In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variantsNguyen, Tuan V., Vander Jagt, Christy J., Wang, Jianghui, Daetwyler, Hans D., Xiang, Ruidong, Goddard, Michael E., Nguyen, Loan T., Ross, Elizabeth M, Hayes, Ben J., Chamberlain, Amanda J. and MacLeod, Iona M. (2023). In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants. Genetics Selection Evolution, 55 (1) 9, 1-15. doi: 10.1186/s12711-023-00783-5 |
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2022 Conference Publication Bos indicus genome percentage effects gene expression profile and differentially expressed genes in Brahman cattle whole bloodRoss, E.M., Nguyen, L.T., Engle, B.N., Chamberlain, A.J., Kho, E. and Hayes, B.J. (2022). Bos indicus genome percentage effects gene expression profile and differentially expressed genes in Brahman cattle whole blood. 12th World Congress on Genetics Applied to Livestock Production (WCGALP), Rotterdam, The Netherlands, 3-8 July 2022. Wageningen, The Netherlands: Wageningen Academic Publishers. doi: 10.3920/978-90-8686-940-4_628 |
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2022 Conference Publication Identification of differentially expressed transcription factors in Brangus skin infested with Rhipicephalus australisMantilla Valdivieso, E. , Nguyen, L., Ross, E., Raza, A., James, P., Hayes, B., Jonsson, N. and Tabor, A. (2022). Identification of differentially expressed transcription factors in Brangus skin infested with Rhipicephalus australis. 12th World Congress on Genetics Applied to Livestock Production (WCGALP), Rotterdam, Netherlands, 3-8 July 2022. Wageningen, Netherlands: Wageningen Academic Publishers. doi: 10.3920/978-90-8686-940-4_557 |
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2022 Conference Publication The long and short of Nanopore genomic prediction: the effect of read length on prediction accuracyLamb, H.J., Nguyen, L.T., Randhawa, I.A.S., Hayes, B.J. and Ross, E.M. (2022). The long and short of Nanopore genomic prediction: the effect of read length on prediction accuracy. 12th World Congress on Genetics Applied to Livestock Production (WCGALP), Rotterdam, Netherlands, 3-8 July 2022. Wageningen, Netherlands: Wageningen Academic Publishers. doi: 10.3920/978-90-8686-940-4_279 |
