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2025 Journal Article Applying the SF6 tracer gas methodology to measure enteric methane emissions in grazing Brahman heifersBoulton, Alana, Costa, Diogo, Firewski, Basil, Gianvecchio, Sarah, Mercadante, Maria Eugenia Zerlotti, Williams, S.R.O., McCosker, Kieren, de Castro, Cecilia, Ong, Chian, Chen, Ziming, Guerra, Elmer, Hudson, Nick, Dekkers, Milou, Cullen, Scott, Nieto Lopez, Andrea, Nerurkar, Sneh, Ostatek-Boczynski, Zofia, Hong, Hung, Furlan, Amanda, Dominguez-Castaño, Pablo, Dekker Nitert, Marloes, Ross, Elizabeth and Fortes, Marina (2025). Applying the SF6 tracer gas methodology to measure enteric methane emissions in grazing Brahman heifers. Animal Production Science, 65 (18) AN25386, 18. doi: 10.1071/an25386 |
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2025 Journal Article Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattleForutan, Mehrnush, Ross, Elizabeth M., Chamberlain, Amanda J., Fordyce, Geoffry, Engle, Bailey N., Nguyen, Loan T. and Hayes, Ben J. (2025). Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattle. Genetics Selection Evolution, 57 (1) 56, 1-14. doi: 10.1186/s12711-025-01004-x |
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2025 Journal Article Improving imputation accuracy across tropically adapted beef cattle: an application for Brahman and Nellore using whole genome sequencing dataFernandes Júnior, G.A., Costilla, R., Carvalheiro, R., Hayes, B., Ross, E.M., Oliveira, H.N. and Albuquerque, L.G. (2025). Improving imputation accuracy across tropically adapted beef cattle: an application for Brahman and Nellore using whole genome sequencing data. Animal, 19 (9) 101601, 101601. doi: 10.1016/j.animal.2025.101601 |
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2025 Journal Article Understanding prokaryotic adaptation through advanced DNA methylation detection techniquesChen, Ziming, Ong, Chian Teng and Ross, Elizabeth M. (2025). Understanding prokaryotic adaptation through advanced DNA methylation detection techniques. The ISME Journal, 19 (1) wraf143, 1-13. doi: 10.1093/ismejo/wraf143 |
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2025 Conference Publication Evaluating oral swabbing as a practical alternative to rumen sampling for large-scale methane emission studies in grazing animalsOng, C. T., Cavallaro, A. S., Fortes, M. R. S., Dekker, M., Boulton, A., Kniwesky, B. and Ross, E. M. (2025). Evaluating oral swabbing as a practical alternative to rumen sampling for large-scale methane emission studies in grazing animals. 26th Conference of the Association for the Advancement of Animal Breeding and Genetics (AAABG), Queenstown, New Zealand, 24 - 26 June 2025. |
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2025 Conference Publication Exploring adaptive sequencing for efficient profiling of methanogenic microbiomes in cattle oral samples as a proxy for methane prediction and mitigation studiesChen, Z., Silaban, J., Ross, E. M. and Ong, C. T. (2025). Exploring adaptive sequencing for efficient profiling of methanogenic microbiomes in cattle oral samples as a proxy for methane prediction and mitigation studies. 26th Conference of the Association for the Advancement of Animal Breeding and Genetics (AAABG), Queenstown, New Zealand, 24 - 26 June 2025. |
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2025 Journal Article Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysisChen, Ziming, Ong, Chian Teng, Nguyen, Loan To, Lamb, Harrison J., González-Recio, O., Gutiérrez-Rivas, M., Meale, Sarah J. and Ross, Elizabeth M. (2025). Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis. BMC Genomics, 26 (1) 504, 504. doi: 10.1186/s12864-025-11649-z |
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2025 Conference Publication Metagenomic predictions for enteric methane emissions in sheep using long-read sequencing of rumen fluid samplesLi, Y., Nguyen, L.T., Ong, C.T., Yadav, S., Aldridge, M., Fitzgerald, P., van der Werf, J. and Ross, E.M. (2025). Metagenomic predictions for enteric methane emissions in sheep using long-read sequencing of rumen fluid samples. Association for the Advancement of Animal Breeding and Genetics (AAABG), Queenstown, New Zealand, 24-26 June 2025. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics. |
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2024 Journal Article Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysisCopley, James P., Hayes, Benjamin J., Ross, Elizabeth M., Speight, Shannon, Fordyce, Geoffry, Wood, Benjamin J. and Engle, Bailey N. (2024). Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis. Genetics Selection Evolution, 56 (1) 70, 70. doi: 10.1186/s12711-024-00936-0 |
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2023 Journal Article Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategiesYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P. and Hayes, Ben J. (2023). Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies. Frontiers in Plant Science, 14 1260517, 1260517. doi: 10.3389/fpls.2023.1260517 |
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2023 Conference Publication Library preparation method affects observed microbiome variation when using Oxford Nanopore SequencingRoss, Elizabeth, Chen, Ziming, Nguyen, Loan, Meale, Sarah and Ong, Chian Teng (2023). Library preparation method affects observed microbiome variation when using Oxford Nanopore Sequencing. 25th Association for the Advancement of Animal Breeding and Genetics Conference, Crawley, Western Australia, 26 – 28 July 2023. |
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2022 Other Outputs Genomic mate-allocation strategies exploiting additive and non-additive genetic effects to maximise total clonal performance in sugarcaneYadav, Seema, Ross, Elizabeth, Wei, Xianming, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P. and Hayes, Ben J. (2022). Genomic mate-allocation strategies exploiting additive and non-additive genetic effects to maximise total clonal performance in sugarcane. doi: 10.1101/2022.12.19.521119 |
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2021 Journal Article A linkage disequilibrium-based approach to position unmapped SNPs in crop speciesYadav, Seema, Ross, Elizabeth M., Aitken, Karen S., Hickey, Lee T., Powell, Owen, Wei, Xianming, Voss-Fels, Kai P. and Hayes, Ben J. (2021). A linkage disequilibrium-based approach to position unmapped SNPs in crop species. BMC Genomics, 22 (1) 773, 1-9. doi: 10.1186/s12864-021-08116-w |
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2021 Journal Article Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicusForutan, Mehrnush, Ross, Elizabeth, Chamberlain, Amanda J., Nguyen, Loan, Mason, Brett, Moore, Stephen, Garner, Josie B., Xiang, Ruidong and Hayes, Ben J. (2021). Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicus. Communications Biology, 4 (1) 829, 1-14. doi: 10.1038/s42003-021-02340-6 |
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2021 Journal Article Accuracy of genomic prediction of complex traits in sugarcaneHayes, Ben J., Wei, Xianming, Joyce, Priya, Atkin, Felicity, Deomano, Emily, Yue, Jenny, Nguyen, Loan, Ross, Elizabeth M., Cavallaro, Tony, Aitken, Karen S. and Voss-Fels, Kai P. (2021). Accuracy of genomic prediction of complex traits in sugarcane. Theoretical and Applied Genetics, 134 (5), 1455-1462. doi: 10.1007/s00122-021-03782-6 |
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2021 Journal Article Strategies and considerations for implementing genomic selection to improve traits with additive and non-additive genetic architectures in sugarcane breedingVoss-Fels, Kai P., Wei, Xianming, Ross, Elizabeth M., Frisch, Matthias, Aitken, Karen S., Cooper, Mark and Hayes, Ben J. (2021). Strategies and considerations for implementing genomic selection to improve traits with additive and non-additive genetic architectures in sugarcane breeding. Theoretical and Applied Genetics, 134 (5), 1493-1511. doi: 10.1007/s00122-021-03785-3 |
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2020 Journal Article Use of whole-genome sequence data and novel genomic selection strategies to improve selection for age at puberty in tropically-adapted beef heifersWarburton, Christie L., Engle, Bailey N., Ross, Elizabeth M., Costilla, Roy, Moore, Stephen S., Corbet, Nicholas J., Allen, Jack M., Laing, Alan R., Fordyce, Geoffry, Lyons, Russell E., McGowan, Michael R., Burns, Brian M. and Hayes, Ben J. (2020). Use of whole-genome sequence data and novel genomic selection strategies to improve selection for age at puberty in tropically-adapted beef heifers. Genetics Selection Evolution, 52 (1) 28, 28. doi: 10.1186/s12711-020-00547-5 |
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2020 Journal Article Characterization of the poll allele in Brahman cattle using long-read Oxford Nanopore sequencingLamb, Harrison J., Ross, Elizabeth M., Nguyen, Loan T., Lyons, Russell E., Moore, Stephen S. and Hayes, Ben J. (2020). Characterization of the poll allele in Brahman cattle using long-read Oxford Nanopore sequencing. Journal of Animal Science, 98 (5) skaa127, skaa127. doi: 10.1093/jas/skaa127 |
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2020 Journal Article Accelerating genetic gain in sugarcane breeding using genomic selectionYadav, Seema, Jackson, Phillip, Wei, Xianming, Ross, Elizabeth M., Aitken, Karen, Deomano, Emily, Atkin, Felicity, Hayes, Ben J. and Voss-Fels, Kai P. (2020). Accelerating genetic gain in sugarcane breeding using genomic selection. Agronomy, 10 (4) 585, 1-21. doi: 10.3390/agronomy10040585 |
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2019 Journal Article Breeding improves wheat productivity under contrasting agrochemical input levelsVoss-Fels, Kai P., Stahl, Andreas, Wittkop, Benjamin, Lichthardt, Carolin, Nagler, Sabrina, Rose, Till, Chen, Tsu-Wei, Zetzsche, Holger, Seddig, Sylvia, Majid Baig, Mirza, Ballvora, Agim, Frisch, Matthias, Ross, Elizabeth, Hayes, Ben J., Hayden, Matthew J., Ordon, Frank, Leon, Jens, Kage, Henning, Friedt, Wolfgang, Stützel, Hartmut and Snowdon, Rod J. (2019). Breeding improves wheat productivity under contrasting agrochemical input levels. Nature Plants, 5 (7), 706-714. doi: 10.1038/s41477-019-0445-5 |
