|
2025 Journal Article Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattleForutan, Mehrnush, Ross, Elizabeth M., Chamberlain, Amanda J., Fordyce, Geoffry, Engle, Bailey N., Nguyen, Loan T. and Hayes, Ben J. (2025). Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattle. Genetics Selection Evolution, 57 (1) 56, 1-14. doi: 10.1186/s12711-025-01004-x |
|
2025 Journal Article Improving imputation accuracy across tropically adapted beef cattle: an application for Brahman and Nellore using whole genome sequencing dataFernandes Júnior, G.A., Costilla, R., Carvalheiro, R., Hayes, B., Ross, E.M., Oliveira, H.N. and Albuquerque, L.G. (2025). Improving imputation accuracy across tropically adapted beef cattle: an application for Brahman and Nellore using whole genome sequencing data. Animal, 19 (9) 101601. doi: 10.1016/j.animal.2025.101601 |
|
2025 Journal Article Understanding prokaryotic adaptation through advanced DNA methylation detection techniquesChen, Ziming, Ong, Chian Teng and Ross, Elizabeth M. (2025). Understanding prokaryotic adaptation through advanced DNA methylation detection techniques. The ISME Journal, 19 (1) wraf143, 1-13. doi: 10.1093/ismejo/wraf143 |
|
2025 Journal Article Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysisChen, Ziming, Ong, Chian Teng, Nguyen, Loan To, Lamb, Harrison J., González-Recio, O., Gutiérrez-Rivas, M., Meale, Sarah J. and Ross, Elizabeth M. (2025). Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis. BMC Genomics, 26 (1) 504, 504. doi: 10.1186/s12864-025-11649-z |
|
2025 Conference Publication Metagenomic predictions for enteric methane emissions in sheep using long-read sequencing of rumen fluid samplesLi, Y., Nguyen, L.T., Ong, C.T., Yadav, S., Aldridge, M., Fitzgerald, P., van der Werf, J. and Ross, E.M. (2025). Metagenomic predictions for enteric methane emissions in sheep using long-read sequencing of rumen fluid samples. Association for the Advancement of Animal Breeding and Genetics (AAABG), Queenstown, New Zealand, 24-26 June 2025. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics. |
|
2024 Journal Article Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibilityMantilla Valdivieso, Emily F., Ross, Elizabeth M., Raza, Ali, Nguyen, Loan, Hayes, Ben J., Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2024). Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility. Scientific Reports, 14 (1) 4419, 1-14. doi: 10.1038/s41598-024-54577-w |
|
2024 Journal Article Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysisCopley, James P., Hayes, Benjamin J., Ross, Elizabeth M., Speight, Shannon, Fordyce, Geoffry, Wood, Benjamin J. and Engle, Bailey N. (2024). Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis. Genetics Selection Evolution, 56 (1) 70, 70. doi: 10.1186/s12711-024-00936-0 |
|
2024 Conference Publication Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattleTahir, Muhammad Sajid, Goddard, Mike, Hayes, Ben, Vander Jagt, Christy, Ross, Elizabeth, Forutan, Mehrnush, Nguyen, Loan, Mason, Brett, Van den Berg, Irene, Phyn, Claire, Meier, Susanne, Bruke, Chris and Chamberlain, Amanda (2024). Mapping RNA-editing QTL in multiple tissues across Bos taurus and Bos indicus reveals regulatory variation in cattle. PAG Australia 2024, Perth, WA, Australia, 18 - 20 September 2024. |
|
2024 Journal Article Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysisOng, Chian Teng, Mody, Karishma T., Cavallaro, Antonino S., Yan, Yakun, Nguyen, Loan T., Shao, Renfu, Mitter, Neena, Mahony, Timothy J. and Ross, Elizabeth M. (2024). Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis. International Journal of Molecular Sciences, 25 (14) 7824, 1-15. doi: 10.3390/ijms25147824 |
|
2024 Conference Publication Measuring HSP in tail hair as an alternative method to assess heat stress in cattleMcCosker, Kieren, Cavallaro, Tony, Lees, Angela, Sammes, Stephanie, McGowan, Michael, Gaughan, John and Ross, Elizabeth (2024). Measuring HSP in tail hair as an alternative method to assess heat stress in cattle. 35th Biennial Conference of the Australian Association of Animal Sciences and the 20th Asian - Australasian Association of Animal Production Societies, Melbourne, VIC, Australia, 8-12 July 2024. Toowong, QLD, Australia: Australian Society of Animal Production. |
|
2024 Journal Article Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertilityForutan, Mehrnush, Engle, Bailey N., Chamberlain, Amanda J., Ross, Elizabeth M., Nguyen, Loan T., D’Occhio, Michael J., Snr, Alf Collins, Kho, Elise A., Fordyce, Geoffry, Speight, Shannon, Goddard, Michael E. and Hayes, Ben J. (2024). Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility. Communications Biology, 7 (1) 724, 724. doi: 10.1038/s42003-024-06403-2 |
|
2024 Journal Article Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approachesChen, Chensong, Bhuiyan, Shamsul A., Ross, Elizabeth, Powell, Owen, Dinglasan, Eric, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben (2024). Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approaches. Frontiers in Plant Science, 15 1398903, 1-13. doi: 10.3389/fpls.2024.1398903 |
|
2023 Journal Article Imputation strategies for genomic prediction using nanopore sequencingLamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0 |
|
2023 Journal Article Use of continuous genotypes for genomic prediction in sugarcaneYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Liu, Shouye, Nguyen, Loan To, Powell, Owen, Hickey, Lee T., Deomano, Emily, Atkin, Felicity, Voss‐Fels, Kai P. and Hayes, Ben J. (2023). Use of continuous genotypes for genomic prediction in sugarcane. The Plant Genome, 17 (1) e20417, e20417. doi: 10.1002/tpg2.20417 |
|
2023 Journal Article Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategiesYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P. and Hayes, Ben J. (2023). Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies. Frontiers in Plant Science, 14 1260517, 1260517. doi: 10.3389/fpls.2023.1260517 |
|
2023 Journal Article Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is availableHayes, Ben J., Copley, James, Dodd, Elsie, Ross, Elizabeth M., Speight, Shannon and Fordyce, Geoffry (2023). Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is available. Genetics Selection Evolution, 55 (1) 71, 1-13. doi: 10.1186/s12711-023-00847-6 |
|
2023 Journal Article Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traitsChen, Chensong, Powell, Owen, Dinglasan, Eric, Ross, Elizabeth M., Yadav, Seema, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben J. (2023). Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traits. The Plant Genome, 16 (4) e20390, 1-13. doi: 10.1002/tpg2.20390 |
|
2023 Conference Publication Are production measures a good indication of pregnancy success?McCosker, Kieren, Boulton, Alana, Dekkers, Milou, Ross, Elizabeth, Hudson, Nick and Fortes, Marina (2023). Are production measures a good indication of pregnancy success?. North Australian Beef Research Update Conference, Darwin, NT Australia, 22-25 August 2023. |
|
2023 Journal Article Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattleLamb, H. J., Nguyen, L. T., Briody, T. E., Ambrose, R. K., Hayes, B. J., Mahony, T. J. and Ross, E. M. (2023). Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattle. Animal Production Science, 63 (11), 1074-1085. doi: 10.1071/an22451 |
|
2023 Journal Article Long-read Pore-C shows the 3D structure of the cattle genomeNguyen, Loan T., Jung, Hyungtaek, Ma, Jun, Andersen, Stacey and Ross, Elizabeth (2023). Long-read Pore-C shows the 3D structure of the cattle genome. Animal Production Science, 63 (11), 1-11. doi: 10.1071/an22479 |
