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2026 Journal Article Corrigendum to ‘Genetic linkage map of the Australian barramundi (Lates calcarifer) reveals potential to leverage extreme sex-specific recombination and sequential hermaphrodism for ultimate breeding program control’ [Aquaculture Volume 622 15 July 2026 744046] (Aquaculture (2026) 622, (S0044848626004291), (10.1016/j.aquaculture.2026.744046))Hintzsche, Jessica, Bertola, Lorenzo Vincenzo, Jones, David B., Warburton, Christie, Powell, Owen, Ross, Elizabeth M., Harrison, Paul, Cate, Holly, Jerry, Dean R., Hayes, Ben J. and Zenger, Kyall R. (2026). Corrigendum to ‘Genetic linkage map of the Australian barramundi (Lates calcarifer) reveals potential to leverage extreme sex-specific recombination and sequential hermaphrodism for ultimate breeding program control’ [Aquaculture Volume 622 15 July 2026 744046] (Aquaculture (2026) 622, (S0044848626004291), (10.1016/j.aquaculture.2026.744046)). Aquaculture, 623 744182, 744182. doi: 10.1016/j.aquaculture.2026.744182 |
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2026 Journal Article Short communication: Oral microbiome as a potential proxy for methane emissions in grazing tropical composite beef cattleOng, Chian Teng, Cavallaro, Tony, Li, Yuhao, Boulton, Alana C, Firewski, Basil S, Nitert, Marloes D, McCosker, Kieren D, Clark, Sam, Cullen, Scott, Dayman, Melissah, Dekker, Milou H, Gangemi, Paul, Goodwin, Kerry, Grant, Tim, Hergenhan, Rachelle, Johnston, David, Scott, Natalie, Taylor, Bradley, Whistler, Cameron, Hayes, Ben J, Fortes, Marina R S and Ross, Elizabeth (2026). Short communication: Oral microbiome as a potential proxy for methane emissions in grazing tropical composite beef cattle. Journal of Animal Science, 104 skag227, 104. doi: 10.1093/jas/skag227 |
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2026 Journal Article Genetic linkage map of the Australian barramundi (Lates calcarifer) reveals potential to leverage extreme sex-specific recombination and sequential hermaphrodism for ultimate breeding program controlHintzsche, Jessica, Bertola, Lorenzo V., Jones, David B., Warburton, Christie, Powell, Owen, Ross, Elizabeth M., Harrison, Paul, Cate, Holly S., Jerry, Dean R., Hayes, Ben J. and Zenger, Kyall R. (2026). Genetic linkage map of the Australian barramundi (Lates calcarifer) reveals potential to leverage extreme sex-specific recombination and sequential hermaphrodism for ultimate breeding program control. Aquaculture, 622 744046, 744046. doi: 10.1016/j.aquaculture.2026.744046 |
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2026 Journal Article Chromosome‑scale genome assembly of the bovine parasite Tritrichomonas foetus using short-read, long‑read and Pore‑C sequencing identifies conserved and lineage‑specific gene families relevant to host interactionSantos, John Harvey M., Cavallaro, Antonino S., Ross, Elizabeth M., Siddle, Hannah V., Boe-Hansen, Gry B., Raza, Ali, Nguyen, Loan T. and Tabor, Ala E. (2026). Chromosome‑scale genome assembly of the bovine parasite Tritrichomonas foetus using short-read, long‑read and Pore‑C sequencing identifies conserved and lineage‑specific gene families relevant to host interaction. Parasitology. doi: 10.1017/S0031182026102716 |
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2025 Journal Article Applying the SF6 tracer gas methodology to measure enteric methane emissions in grazing Brahman heifersBoulton, Alana C., Costa, Diogo F.A., Firewski, Basil S., Gianvecchio, Sarah B., Mercadante, Maria Eugenia Z., Williams, S. Richard O., McCosker, Kieren, de Castro, Cecilia W.S.L., Ong, Chian T., Chen, Ziming, Guerra, Elmer F., Hudson, Nicholas H., Dekkers, Milou H., Cullen, Scott, Lopez, Andrea N., Nerurkar, Sneh K., Ostatek-Boczynski, Zofia, Hong, Hung T., Furlan, Amanda O., Dominguez-Castaño, Pablo, Nitert, Marloes D., Ross, Elizabeth M. and Fortes, Marina R.S. (2025). Applying the SF6 tracer gas methodology to measure enteric methane emissions in grazing Brahman heifers. Animal Production Science, 65 (18) AN25386, 1-12. doi: 10.1071/an25386 |
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2025 Journal Article Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattleForutan, Mehrnush, Ross, Elizabeth M., Chamberlain, Amanda J., Fordyce, Geoffry, Engle, Bailey N., Nguyen, Loan T. and Hayes, Ben J. (2025). Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattle. Genetics Selection Evolution, 57 (1) 56, 1-14. doi: 10.1186/s12711-025-01004-x |
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2025 Journal Article Improving imputation accuracy across tropically adapted beef cattle: an application for Brahman and Nellore using whole genome sequencing dataFernandes Júnior, G.A., Costilla, R., Carvalheiro, R., Hayes, B., Ross, E.M., Oliveira, H.N. and Albuquerque, L.G. (2025). Improving imputation accuracy across tropically adapted beef cattle: an application for Brahman and Nellore using whole genome sequencing data. Animal, 19 (9) 101601, 101601. doi: 10.1016/j.animal.2025.101601 |
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2025 Journal Article Understanding prokaryotic adaptation through advanced DNA methylation detection techniquesChen, Ziming, Ong, Chian Teng and Ross, Elizabeth M. (2025). Understanding prokaryotic adaptation through advanced DNA methylation detection techniques. The ISME Journal, 19 (1) wraf143, 1-13. doi: 10.1093/ismejo/wraf143 |
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2025 Journal Article Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysisChen, Ziming, Ong, Chian Teng, Nguyen, Loan To, Lamb, Harrison J., González-Recio, O., Gutiérrez-Rivas, M., Meale, Sarah J. and Ross, Elizabeth M. (2025). Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis. BMC Genomics, 26 (1) 504, 1-23. doi: 10.1186/s12864-025-11649-z |
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2024 Journal Article Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibilityMantilla Valdivieso, Emily F., Ross, Elizabeth M., Raza, Ali, Nguyen, Loan, Hayes, Ben J., Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2024). Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility. Scientific Reports, 14 (1) 4419, 1-14. doi: 10.1038/s41598-024-54577-w |
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2024 Journal Article Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysisCopley, James P., Hayes, Benjamin J., Ross, Elizabeth M., Speight, Shannon, Fordyce, Geoffry, Wood, Benjamin J. and Engle, Bailey N. (2024). Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis. Genetics Selection Evolution, 56 (1) 70, 70. doi: 10.1186/s12711-024-00936-0 |
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2024 Journal Article Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysisOng, Chian Teng, Mody, Karishma T., Cavallaro, Antonino S., Yan, Yakun, Nguyen, Loan T., Shao, Renfu, Mitter, Neena, Mahony, Timothy J. and Ross, Elizabeth M. (2024). Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis. International Journal of Molecular Sciences, 25 (14) 7824, 1-15. doi: 10.3390/ijms25147824 |
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2024 Journal Article Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertilityForutan, Mehrnush, Engle, Bailey N., Chamberlain, Amanda J., Ross, Elizabeth M., Nguyen, Loan T., D’Occhio, Michael J., Snr, Alf Collins, Kho, Elise A., Fordyce, Geoffry, Speight, Shannon, Goddard, Michael E. and Hayes, Ben J. (2024). Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility. Communications Biology, 7 (1) 724, 724. doi: 10.1038/s42003-024-06403-2 |
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2024 Journal Article Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approachesChen, Chensong, Bhuiyan, Shamsul A., Ross, Elizabeth, Powell, Owen, Dinglasan, Eric, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben (2024). Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approaches. Frontiers in Plant Science, 15 1398903, 1-13. doi: 10.3389/fpls.2024.1398903 |
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2023 Journal Article Imputation strategies for genomic prediction using nanopore sequencingLamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0 |
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2023 Journal Article Use of continuous genotypes for genomic prediction in sugarcaneYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Liu, Shouye, Nguyen, Loan To, Powell, Owen, Hickey, Lee T., Deomano, Emily, Atkin, Felicity, Voss‐Fels, Kai P. and Hayes, Ben J. (2023). Use of continuous genotypes for genomic prediction in sugarcane. The Plant Genome, 17 (1) e20417, e20417. doi: 10.1002/tpg2.20417 |
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2023 Journal Article Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategiesYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P. and Hayes, Ben J. (2023). Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies. Frontiers in Plant Science, 14 1260517, 1260517. doi: 10.3389/fpls.2023.1260517 |
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2023 Journal Article Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is availableHayes, Ben J., Copley, James, Dodd, Elsie, Ross, Elizabeth M., Speight, Shannon and Fordyce, Geoffry (2023). Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is available. Genetics Selection Evolution, 55 (1) 71, 1-13. doi: 10.1186/s12711-023-00847-6 |
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2023 Journal Article Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traitsChen, Chensong, Powell, Owen, Dinglasan, Eric, Ross, Elizabeth M., Yadav, Seema, Wei, Xianming, Atkin, Felicity, Deomano, Emily and Hayes, Ben J. (2023). Genomic prediction with machine learning in sugarcane, a complex highly polyploid clonally propagated crop with substantial non‐additive variation for key traits. The Plant Genome, 16 (4) e20390, 1-13. doi: 10.1002/tpg2.20390 |
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2023 Journal Article Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattleLamb, H. J., Nguyen, L. T., Briody, T. E., Ambrose, R. K., Hayes, B. J., Mahony, T. J. and Ross, E. M. (2023). Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattle. Animal Production Science, 63 (11), 1074-1085. doi: 10.1071/an22451 |
