Overview
Background
As a teaching and research academic within the School of the Environment at the University of Queensland, I research the biology and genetics of mosquitoes in our region of the Indo-Pacific that delivers fundamental knowledge into the role mosquitoes play in mosquito-borne disease. This work moves across basic and applied research and has advanced our understanding of mosquitoes, their evolution, species’ distributions, permitting better focused mosquito control to be imagined. More recent research involves exploring new environmentally friendly biological control tools such as using the Wolbachia bacterium and genetic modification to combat mosquito-borne disease.
For more detail on my research please see below and at this link http://www.nigelbeebe.com
Availability
- Associate Professor Nigel Beebe is:
- Available for supervision
- Media expert
Fields of research
Research interests
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Mosquito Biology and Evolution
At a fundamental level, research outcomes from my team continue to answer important questions about which mosquito species transmit disease pathogens to humans. From developing the first molecular diagnostics to distinguish closely related cryptic mosquito species, we have identified the subset of vector species from the many non-vector species. We have mapped where they exist (distribution) and studying why they are there (ecology) and how their populations genetically connect and move (population genetics/genomics). This work has led to recent more applied research that address issues of mosquito control in the Indo-Pacific and beyond by developing new species-specific biological control tools. I feel we are at the beginning of an exciting journey in developing new environmentally friendly mosquito control tools for Australia, the Indo-Pacific region and beyond. Funding for this work has been through the Bill and Melinda Gates Foundation and NHMRC. There are four research themes which constitute my past, present and future research.
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1) Malaria vectors of our region
Anopheles mosquitoes (malaria vectors): this work revolves around describing the evolution, distribution, biology and behaviour of malaria vectors throughout our Indo-Pacific region. Population genetics and genomics investigations are now leading to new opportunities for mosquito control including exploring if we can use synthetic biology to develop a malaria resistant mosquito for the Indo-Pacific (detailed in #4 below).
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2) Exotic urban arbovirus vectors and biosecurity threats
The dengue vector Aedes aegypti is endemic to Queensland but presents a major biosecurity threat to the rest of Australia while the exotic invasive Asian tiger mosquito Aedes albopictus has arrived in the Torres Strait from Indonesia and now presents a serious incursion threat to mainland Australia. Our research involves addressing these threats by better understanding their historic and contemporary movement and developing novel biological control population suppression tools (detailed in #4 below).
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3) Endemic arbovirus vectors and biosecurity threats
Culex mosquito species include Australia’s major endemic arbovirus vectors including Ross River virus, Barmah Forrest virus as well as the recent explosion of Japanese encephalitis through inland Australia in 2022. Evolutionary and population genetics approaches are providing vital information on the vector species status and the development molecular diagnostics to study these cryptic mosquito species in our region.
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4) Biological control of mosquitoes
Two species-specific mosquito control initiatives are now in development. The first initiative utilises reproductively incompatible Wolbachia-infected male mosquitoes for population suppression was supported through NHMRC and Verily Life Science. successful proof of concept field trials were performed in 2018-19 in north Queensland towns. The second initiative sees our team exploring the idea of a malaria resistant Anopheles mosquito for our region using CRISPR-Cas9 gene-drive tools that can drive super-Mendelian inheritance a malaria resistant phenotype. This work is currently supported by the Bill and Melinda Gates Foundation and NHMRC.
Research impacts
From my development of the first molecular tools to study the many cryptic mosquito species during my PhD, I have been fortunate to have grown the field of vector biology, genetics and now vector control across three decades, acting as a crucial reference point for this work in Australasia and the Indo-Pacific region. Below are two examples of the ongoing evolution of fundamental scientific research and speaks to the exciting space where baseline information intersects with the frontiers of innovation and imagination.
One exciting impact and outcome was in determining exactly which mosquito species in our region transmit malaria because they exist as many isomorphic cryptic species that require molecular diagnostic to distinguish each species. Through a productive multi-decade collaboration with the Australian Defense Force, we determined the subset of malaria vector species in our region, from the many non-vector species, mapped their spatial distribution through the Indo-Pacific using over 1700 regional sampling sites, and are now describing their population genetics/genomics structures and gene flow barriers through this region. This fantastic resource is feeding new ways to think about mosquito control including exploring the use of genetic modification and gene drive technologies as environmentally friendly species-specific mosquito control.
The second research impact was in the developing a reproductively incompatible male release population suppression technology for the dengue mosquito Aedes aegypti. As males don’t bite they can be safely be released on mass, and making them incompatible (essentially sterile) with a naturally occuring Wolbachia bacterium provided the tool to execute a proof of concept treatment/control field trial in small towns in the Queensland Cassowary coast in north Queensland during the first few months of 2018 (called “Debug Innisfail”). In releasing 3 million males over 20 weeks we saw between 80-90% Ae. aegypti adult suppression in our treatment vs control landscapes and the suppression effect was observes the next season in two of the three treatment towns. Now thanks to NHMRC we are now developing this technology into a more deployable product.
Works
Search Professor Nigel Beebe’s works on UQ eSpace
2024
Journal Article
A genotyping array for the globally invasive vector mosquito, Aedes albopictus
Cosme, Luciano Veiga, Corley, Margaret, Johnson, Thomas, Severson, Dave W., Yan, Guiyun, Wang, Xiaoming, Beebe, Nigel, Maynard, Andrew, Bonizzoni, Mariangela, Khorramnejad, Ayda, Martins, Ademir Jesus, Lima, José Bento Pereira, Munstermann, Leonard E., Surendran, Sinnathamby N., Chen, Chun-Hong, Maringer, Kevin, Wahid, Isra, Mukherjee, Shomen, Xu, Jiannon, Fontaine, Michael C., Estallo, Elizabet L., Stein, Marina, Livdahl, Todd, Scaraffia, Patricia Y., Carter, Brendan H., Mogi, Motoyoshi, Tuno, Nobuko, Mains, James W., Medley, Kim A. ... Caccone, Adalgisa (2024). A genotyping array for the globally invasive vector mosquito, Aedes albopictus. Parasites and Vectors, 17 (1) 106. doi: 10.1186/s13071-024-06158-z
2024
Journal Article
Genetic and geographic population structure in the malaria vector, Anopheles farauti, provides a candidate system for pioneering confinable gene-drive releases
Ambrose, Luke, Allen, Scott L., Iro’ofa, Charlie, Butafa, Charles and Beebe, Nigel W. (2024). Genetic and geographic population structure in the malaria vector, Anopheles farauti, provides a candidate system for pioneering confinable gene-drive releases. Heredity, 132 (5), 1-15. doi: 10.1038/s41437-024-00677-2
2024
Journal Article
Citizen Science for Enhanced Dengue Vector Surveillance in Solomon Islands: A Methods Paper
Craig, Adam T., Panda, Nixon, Palapu, Rudgard, Oku, Geoffrey, Lifoia, Clement, Tatalu, Joanna, Beebe, Nigel, Kelly, Gerard, Kama Jr, Nathan, Iro’ofa, Charlie and Bugoro, Hugo (2024). Citizen Science for Enhanced Dengue Vector Surveillance in Solomon Islands: A Methods Paper. Citizen Science: Theory and Practice, 9 (1), 1-13. doi: 10.5334/cstp.679
2024
Journal Article
Comparative assessment of a novel fan box trap for collecting Anopheles farauti and culicine mosquitoes alive in tropical north Queensland, Australia
Chow, Weng K., Cooper, Robert D., Lokhorst, Matthew, Zalucki, Myron P., Ambrose, Luke and Beebe, Nigel W. (2024). Comparative assessment of a novel fan box trap for collecting Anopheles farauti and culicine mosquitoes alive in tropical north Queensland, Australia. Journal of Medical Entomology, 61 (2), 491-497. doi: 10.1093/jme/tjad156
2023
Other Outputs
Anopheles farauti microsatellite and Anopheles farauti complex sequence data (mitogenome and Cardinal gene)
Luke Ambrose, Scott Allen and Nigel W. Beebe (2023). Anopheles farauti microsatellite and Anopheles farauti complex sequence data (mitogenome and Cardinal gene). The University of Queensland. (Dataset) doi: 10.48610/7d691e8
2023
Journal Article
Estimating mosquito abundance and population suppression in an incompatible insect technique study
Griffin, Lachlan, Pagendam, Daniel, Drovandi, Christopher, Trewin, Brendan and Beebe, Nigel W. (2023). Estimating mosquito abundance and population suppression in an incompatible insect technique study. Journal of Applied Ecology, 60 (9), 1803-1815. doi: 10.1111/1365-2664.14465
2023
Journal Article
A bacterium against the tiger: further evidence of the potential of non‐inundative releases of males with manipulated Wolbachia infection in reducing fertility of Aedes albopictus field populations in Italy
Caputo, Beniamino, Moretti, Riccardo, Virgillito, Chiara, Manica, Mattia, Lampazzi, Elena, Lombardi, Giulia, Serini, Paola, Pichler, Verena, Beebe, Nigel W., Della Torre, Alessandra and Calvitti, Maurizio (2023). A bacterium against the tiger: further evidence of the potential of non‐inundative releases of males with manipulated Wolbachia infection in reducing fertility of Aedes albopictus field populations in Italy. Pest Management Science, 79 (9), 3167-3176. doi: 10.1002/ps.7495
2023
Journal Article
Population structure and invasion history of Aedes aegypti (Diptera: Culicidae) in Southeast Asia and Australasia
Maynard, Andrew J., Ambrose, Luke, Bangs, Michael J., Ahmad, Rohani, Butafa, Charles and Beebe, Nigel W. (2023). Population structure and invasion history of Aedes aegypti (Diptera: Culicidae) in Southeast Asia and Australasia. Evolutionary Applications, 16 (4), 849-862. doi: 10.1111/eva.13541
2023
Journal Article
Insecticide resistance compromises the control of Aedes aegypti in Bangladesh
Al‐Amin, Hasan Mohammad, Gyawali, Narayan, Graham, Melissa, Alam, Mohammad Shafiul, Lenhart, Audrey, Hugo, Leon E., Rašić, Gordana, Beebe, Nigel W. and Devine, Gregor J. (2023). Insecticide resistance compromises the control of Aedes aegypti in Bangladesh. Pest Management Science, 79 (8), 2846-2861. doi: 10.1002/ps.7462
2023
Journal Article
Seasonal assessment on the effects of time of night, temperature and humidity on the biting profile of Anopheles farauti in north Queensland, Australia using a population naive to malaria vector control pressures
Chow, Weng K., Beebe, Nigel W., Ambrose, Luke, Pickering, Paul and Cooper, Robert D. (2023). Seasonal assessment on the effects of time of night, temperature and humidity on the biting profile of Anopheles farauti in north Queensland, Australia using a population naive to malaria vector control pressures. Malaria Journal, 22 (1) 85, 1-9. doi: 10.1186/s12936-023-04495-5
2022
Journal Article
Wolbachia wAlbB inhibit dengue and Zika infection in the mosquito Aedes aegypti with an Australian background
Hugo, Leon E., Rašić, Gordana, Maynard, Andrew J., Ambrose, Luke, Liddington, Catherine, Thomas, Callum J. E., Nath, Nisa Suraj, Graham, Melissa, Winterford, Clay, Wimalasiri-Yapa, B M C Randika, Xi, Zhiyong, Beebe, Nigel W. and Devine, Gregor J. (2022). Wolbachia wAlbB inhibit dengue and Zika infection in the mosquito Aedes aegypti with an Australian background. PLoS Neglected Tropical Diseases, 16 (10) e0010786, e0010786. doi: 10.1371/journal.pntd.0010786
2022
Journal Article
Comparisons of chemosensory gene repertoires in human and non-human feeding Anopheles mosquitoes link olfactory genes to anthropophily
Ambrose, Luke, Popovic, Iva, Hereward, James, Ortiz-Barrientos, Daniel and Beebe, Nigel W. (2022). Comparisons of chemosensory gene repertoires in human and non-human feeding Anopheles mosquitoes link olfactory genes to anthropophily. iScience, 25 (7) 104521, 104521. doi: 10.1016/j.isci.2022.104521
2021
Journal Article
Releasing incompatible males drives strong suppression across populations of wild and Wolbachia-carrying Aedes aegypti in Australia
Beebe, Nigel W., Pagendam, Dan, Trewin, Brendan J., Boomer, Andrew, Bradford, Matt, Ford, Andrew, Liddington, Catherine, Bondarenco, Artiom, de Barro, Paul J., Gilchrist, Joshua, Paton, Christopher, Staunton, Kyran M., Johnson, Brian, Maynard, Andrew J., Devine, Gregor J., Hugo, Leon E., Rasic, Gordana, Cook, Helen, Massaro, Peter, Snoad, Nigel, Crawford, Jacob E., White, Bradley J., Xi, Zhiyong and Ritchie, Scott A. (2021). Releasing incompatible males drives strong suppression across populations of wild and Wolbachia-carrying Aedes aegypti in Australia. Proceedings of the National Academy of Sciences of the United States of America, 118 (41) e2106828118, e2106828118. doi: 10.1073/pnas.2106828118
2021
Journal Article
Gene flow between island populations of the malaria mosquito, Anopheles hinesorum, may have contributed to the spread of divergent host preference phenotypes
Ambrose, Luke, Ortiz‐Barrientos, Daniel, Cooper, Robert D., Lobo, Neil F., Burkot, Thomas R., Russell, Tanya L. and Beebe, Nigel W. (2021). Gene flow between island populations of the malaria mosquito, Anopheles hinesorum, may have contributed to the spread of divergent host preference phenotypes. Evolutionary Applications, 14 (9) eva.13288, 1-14. doi: 10.1111/eva.13288
2021
Journal Article
Mark-release-recapture of male Aedes aegypti (Diptera: Culicidae): Use of rhodamine B to estimate movement, mating and population parameters in preparation for an incompatible male program
Trewin, Brendan J., Pagendam, Daniel E., Johnson, Brian J., Paton, Chris, Snoad, Nigel, Ritchie, Scott A., Staunton, Kyran M., White, Bradley J., Mitchell, Sara and Beebe, Nigel W. (2021). Mark-release-recapture of male Aedes aegypti (Diptera: Culicidae): Use of rhodamine B to estimate movement, mating and population parameters in preparation for an incompatible male program. PL o S Neglected Tropical Diseases, 15 (6) e0009357, 1-21. doi: 10.1371/journal.pntd.0009357
2021
Journal Article
The impact of sublethal permethrin exposure on susceptible and resistant genotypes of the urban disease vector, Aedes aegypti
Rigby, Lisa M., Johnson, Brian J., Peatey, Christopher L., Beebe, Nigel W. and Devine, Gregor J (2021). The impact of sublethal permethrin exposure on susceptible and resistant genotypes of the urban disease vector, Aedes aegypti. Pest Management Science, 77 (7) ps.6398, 3450-3457. doi: 10.1002/ps.6398
2021
Journal Article
The presence of knockdown resistance mutations reduces male mating competitiveness in the major arbovirus vector, Aedes aegypti
Rigby, Lisa M., Johnson, Brian J., Rašić, Gordana, Peatey, Christopher L., Hugo, Leon E., Beebe, Nigel W., Hartel, Gunter F. and Devine, Gregor J. (2021). The presence of knockdown resistance mutations reduces male mating competitiveness in the major arbovirus vector, Aedes aegypti. PLoS Neglected Tropical Diseases, 15 (2) e0009121, 1-13. doi: 10.1371/journal.pntd.0009121
2020
Journal Article
Modelling the Wolbachia incompatible insect technique: strategies for effective mosquito population elimination
Pagendam, D. E., Trewin, B. J., Snoad, N., Ritchie, S. A., Hoffmann, A. A., Staunton, K. M., Paton, C. and Beebe, N. (2020). Modelling the Wolbachia incompatible insect technique: strategies for effective mosquito population elimination. BMC Biology, 18 (1) 161, 1-13. doi: 10.1186/s12915-020-00887-0
2020
Journal Article
Identifying the fitness costs of a pyrethroid-resistant genotype in the major arboviral vector Aedes aegypti
Rigby, Lisa M., Rašić, Gordana, Peatey, Christopher L., Hugo, Leon E., Beebe, Nigel W. and Devine, Gregor J. (2020). Identifying the fitness costs of a pyrethroid-resistant genotype in the major arboviral vector Aedes aegypti. Parasites & Vectors, 13 (1) 358, 358. doi: 10.1186/s13071-020-04238-4
2019
Journal Article
Defining the larval habitat: abiotic and biotic parameters associated with Anopheles farauti productivity
McLaughlin, Kimberley, Burkot, Thomas R., Oscar, Jance, Beebe, Nigel W. and Russell, Tanya L. (2019). Defining the larval habitat: abiotic and biotic parameters associated with Anopheles farauti productivity. Malaria Journal, 18 (1) 416, 1-7. doi: 10.1186/s12936-019-3049-7
Funding
Current funding
Supervision
Availability
- Associate Professor Nigel Beebe is:
- Available for supervision
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Available projects
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New Aedes incompatable/sterile population suppression tool development to control mosquitoes
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Genome volution exploration in malaria mosquitoes from the Southwest Pacific
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Molecular ecology of the arbovirus vectors in the Culex sitiens subgroup through Australasia
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Exploring mosquito genetic modification technologies as a vector borne disease control tool
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Genome evolution exploration in malaria mosquitoes from the Southwest Pacific
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Molecular ecology of the arbovirus vectors in the Culex sitiens subgroup through Australasia
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Exploring mosquito genetic modification technologies as a vector borne disease control tool
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New Aedes incompatable/sterile population suppression tool development to control mosquitoes
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Molecular diagnostics development for identifying cryptic mosquito species in Australasia
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Expanding Aedes population suppression and population replacement tools using Wolbachia
This project aims to further develop and refine our Aedes mosquito population suppression tools using Wolbachia-induced incompatibility and sterility. Wolbachia, a naturally occurring bacterium, can be introduced into Aedes aegypti and Aedes albopictus populations to create incompatibilities between infected and uninfected mosquitoes, leading to reduced reproduction and population decline. By optimizing Wolbachia strains and release strategies, this project seeks to increase the repertoire of tools to either suppress mosquito populations, or replac mosquito populations thereby decreasing the transmission of diseases like dengue, Zika, and chikungunya.
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Genome evolution exploration in malaria mosquitoes from the Southwest Pacific
Exploring genome evolution in malaria mosquitoes (Anopheles) from the Southwest Pacific provides valuable insights into the mechanisms driving adaptation in these disease vectors. We have identified differences in biting behavior, including host preferences and for feeding times, that are likely shaped by both genetic and environmental factors. In the unique biogeographically diverse ecological settings of the Southwest Pacific, some mosquitoes have evolved distinct biting patterns in response to human activity, climate, and the presence of alternative hosts. Genomic studies can help reveal the underlying genetic changes that drive these behaviors, shedding light on how mosquitoes might shift from biting animals to humans or change their activity periods to avoid control measures. Understanding these behavioral adaptations is key to developing new and vector control strategies.
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Molecular ecology of the arbovirus vectors in the Culex sitiens subgroup through Australasia
This project aims to investigate the molecular ecology of arbovirus vectors within the Culex sitiens subgroup across Australasia, and particularly the main vector Culex annulirostris. The project will ficus on understanding the genetic diversity, population structure, and evolutionary dynamics that influence their ecology and potential to transmit arboviruses such as the endemic Ross River virus and the recent exotic Japanese encephalitis outbreak that occurred in 2022.
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Modeling Gene Drive spread in the Southwest Pacific malaria mosquito Anopheles farauti
This PhD project focuses on modeling gene drive strategies in Anopheles farauti, a primary malaria vector in the Southwest Pacific, using MG-Drive modeling framework. The project will involve simulating various gene drive constructs to assess their potential impact on mosquito populations and malaria transmission. By exploring factors such as drive efficiency, resistance development, and ecological impact, the research aims to optimize gene drive designs for effective and sustainable vector control in the future. The outcomes will provide valuable insights into the feasibility and risks of deploying gene drives in Anopheles farauti, contributing to the development of innovative malaria control strategies.
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Field-ready molecular diagnostics for identifying cryptic mosquito species in Australasia
This project aims to develop portable molecular diagnostics for rapid identification of cryptic mosquito species in the Indo-Pacific region. By designing and validating molecular assays that target specific genetic markers, we will create easy-to-use diagnostic kits suitable for field use. These tools will enhance mosquito surveillance by enabling accurate species identification in real-time, critical for effective vector control. Field trials will validate the kits' performance, and local health teams will be trained to integrate these diagnostics into routine surveillance, improving mosquito control and disease management efforts across the region.
Supervision history
Current supervision
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Doctor Philosophy
Exploring the development of a malaria refractory Anopheles farauti
Principal Advisor
Other advisors: Professor Sassan Asgari
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Doctor Philosophy
The development and potential for a malaria resistant Anopheles farauti
Principal Advisor
Other advisors: Professor Sassan Asgari
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Doctor Philosophy
Investigating molecular interactions of mosquito-Wolbachia-virus interactions
Associate Advisor
Other advisors: Professor Sassan Asgari
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Doctor Philosophy
Role of miRNA regulation in metamorphosis and fecundity of Aedes aegypti
Associate Advisor
Other advisors: Dr Mazhar Hussain, Dr Kayvan Etebari, Professor Sassan Asgari
Completed supervision
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2024
Doctor Philosophy
Observations on the biology and ecology of Anopheles farauti in north Queensland, Australia
Principal Advisor
Other advisors: Emeritus Professor Myron Zalucki
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2021
Doctor Philosophy
Population genetics and comparative genomics of Anopheles mosquitoes with different feeding behaviours
Principal Advisor
Other advisors: Professor Daniel Ortiz-Barrientos
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2020
Doctor Philosophy
Invasion History and Evolution of the Asian Tiger Mosquito Aedes albopictus (Skuse, 1894) and the Yellow Fever Mosquito Aedes aegypti (Linnaeus, 1762) in the Indo-Pacific
Principal Advisor
Other advisors: Dr James Hereward, Dr Caitlin Curtis
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2022
Doctor Philosophy
Investigating the role of N6-methyladenosine modification in Aedes aegypti during dengue virus infection
Associate Advisor
Other advisors: Dr Kayvan Etebari, Professor Sassan Asgari
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2021
Doctor Philosophy
The biological costs and benefits associated with a pyrethroid-resistant genotype of Aedes aegypti
Associate Advisor
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2021
Master Philosophy
Investigating the role of small non-coding RNAs in Aedes aegypti-Ross River virus interaction
Associate Advisor
Other advisors: Professor Sassan Asgari
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2021
Doctor Philosophy
Investigating the molecular basis for the maintenance of persistent infection by Wolbachia pipientis wAlbB strain in the dengue mosquito vector, Aedes aegypti
Associate Advisor
Other advisors: Professor Sassan Asgari
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2020
Doctor Philosophy
Interaction between flaviviruses and the vector Aedes aegypti, an overview into replication and microRNAs
Associate Advisor
Other advisors: Professor Sassan Asgari
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2017
Doctor Philosophy
Exploring the molecular mechanism(s) involved in Wolbachia-Aedes aegypti-dengue virus interactions
Associate Advisor
Other advisors: Dr Mazhar Hussain, Professor Sassan Asgari
Media
Enquiries
Contact Associate Professor Nigel Beebe directly for media enquiries about:
- Arbovirus Vectors
- Exotic mosquito incursions
- Malaria vectors
- Mosquito-borne disease
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