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2020 Book Chapter Aging of intestinal stem cells and associated nicheJardé, Thierry, Nefzger, Christian M., Polo, Jose M. and Abud, Helen E. (2020). Aging of intestinal stem cells and associated niche. The Stem Cell Niche during Ageing. (pp. 25-40) edited by Susie Nilsson. Cambridge, MA, United States: Academic Press. doi: 10.1016/bs.asn.2020.05.001 |
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2019 Journal Article Class-switch recombination occurs infrequently in germinal centersRoco, Jonathan A., Mesin, Luka, Binder, Sebastian C., Nefzger, Christian, Gonzalez-Figueroa, Paula, Canete, Pablo F., Ellyard, Julia, Shen, Qian, Robert, Philippe A., Cappello, Jean, Vohra, Harpreet, Zhang, Yang, Nowosad, Carla R., Schiepers, Arien, Corcoran, Lynn M., Toellner, Kai-Michael, Polo, Jose M., Meyer-Hermann, Michael, Victora, Gabriel D. and Vinuesa, Carola G. (2019). Class-switch recombination occurs infrequently in germinal centers. Immunity, 51 (2), 337-350.e7. doi: 10.1016/j.immuni.2019.07.001 |
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2019 Journal Article TAF5L and TAF6L maintain self-renewal of embryonic stem cells via the MYC regulatory networkSeruggia, Davide, Oti, Martin, Tripathi, Pratibha, Canver, Matthew C., LeBlanc, Lucy, Di Giammartino, Dafne C., Bullen, Michael J., Nefzger, Christian M., Sun, Yu Bo Yang, Farouni, Rick, Polo, Jose M., Pinello, Luca, Apostolou, Effie, Kim, Jonghwan, Orkin, Stuart H. and Das, Partha Pratim (2019). TAF5L and TAF6L maintain self-renewal of embryonic stem cells via the MYC regulatory network. Molecular Cell, 74 (6), 1148-+. doi: 10.1016/j.molcel.2019.03.025 |
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2019 Journal Article Propagation and maintenance of mouse embryonic stem cellsPaynter, Jacob M., Chen, Joseph, Liu, Xiaodong and Nefzger, Christian M. (2019). Propagation and maintenance of mouse embryonic stem cells. Methods in Molecular Biology, 1940, 33-45. doi: 10.1007/978-1-4939-9086-3_3 |
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2019 Journal Article Generation of mouse-induced pluripotent stem cells by lentiviral transductionLiu, Xiaodong, Chen, Joseph, Firas, Jaber, Paynter, Jacob M., Nefzger, Christian M. and Polo, Jose M. (2019). Generation of mouse-induced pluripotent stem cells by lentiviral transduction. Methods in Molecular Biology, 1940, 63-76. doi: 10.1007/978-1-4939-9086-3_5 |
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2019 Book Chapter Production of high-titer lentiviral particles for stable genetic modification of mammalian cellsLarcombe, Michael R., Manent, Jan, Chen, Joseph, Mishra, Ketan, Liu, Xiaodong and Nefzger, Christian M. (2019). Production of high-titer lentiviral particles for stable genetic modification of mammalian cells. Mouse cell culture. (pp. 47-61) edited by Ivan Bertoncello. New York, NY, United States: Humana Press. doi: 10.1007/978-1-4939-9086-3_4 |
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2019 Journal Article Generation of four iPSC lines from peripheral blood mononuclear cells (PBMCs) of an attention deficit hyperactivity disorder (ADHD) individual and a healthy sibling in an Australia-Caucasian familyTong, Janette, Lee, Kyung Min, Liu, Xiaodong, Nefzger, Christian M., Vijayakumar, Prasidhee, Hawi, Ziarih, Pang, Ken C., Parish, Clare L., Polo, Jose M. and Bellgrove, Mark A. (2019). Generation of four iPSC lines from peripheral blood mononuclear cells (PBMCs) of an attention deficit hyperactivity disorder (ADHD) individual and a healthy sibling in an Australia-Caucasian family. Stem Cell Research, 34 101353. doi: 10.1016/j.scr.2018.11.014 |
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2018 Journal Article A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructsPflueger, Christian, Tan, Dennis, Swain, Tessa, Trung Nguyen,, Pflueger, Jahnvi, Nefzger, Christian, Polo, Jose M., Ford, Ethan and Lister, Ryan (2018). A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs. Genome Research, 28 (8), 1193-1206. doi: 10.1101/gr.233049.117 |
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2018 Journal Article Identification of dynamic undifferentiated cell states within the male germlineLa, Hue M., Makela, Juho-Antti, Chan, Ai-Leen, Rossello, Fernando J., Nefzger, Christian M., Legrand, Julien M. D., De Seram, Mia, Polo, Jose M. and Hobbs, Robin M. (2018). Identification of dynamic undifferentiated cell states within the male germline. Nature Communications, 9 (1) 2819. doi: 10.1038/s41467-018-04827-z |
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2018 Journal Article Fine tuning of canonical Wnt stimulation enhances differentiation of pluripotent stem cells independent of beta-catenin-mediated T-cell factor signalingChen, Joseph, Nefzger, Christian M., Rossello, Fernando J., Sun, Yu B. Y., Lim, Sue Mei, Liu, Xiaodong, de Boer, Suzan, Knaupp, Anja S., Li, Jinhua, Davidson, Kathryn C., Polo, Jose M. and Barberi, Tiziano (2018). Fine tuning of canonical Wnt stimulation enhances differentiation of pluripotent stem cells independent of beta-catenin-mediated T-cell factor signaling. Stem Cells, 36 (6), 822-833. doi: 10.1002/stem.2794 |
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2018 Journal Article SRSF3 promotes pluripotency through Nanog mRNA export and coordination of the pluripotency gene expression programRatnadiwakara, Madara, Archer, Stuart K., Dent, Craig I., De Los Mozos, Igor Ruiz, Beilharz, Traude H., Knaupp, Anja S., Nefzger, Christian M., Polo, Jose M. and Anko, Minna-Liisa (2018). SRSF3 promotes pluripotency through Nanog mRNA export and coordination of the pluripotency gene expression program. Elife, 7 ARTN e37419. doi: 10.7554/eLife.37419 |
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2018 Journal Article Method of derivation and differentiation of mouse embryonic stem cells generating synchronous neuronal networksGazina, Elena V., Morrisroe, Emma, Mendis, Gunarathna D. C., Michalska, Anna E., Chen, Joseph, Nefzger, Christian M., Rollo, Benjamin N., Reid, Christopher A., Pera, Martin F. and Petrou, Steven (2018). Method of derivation and differentiation of mouse embryonic stem cells generating synchronous neuronal networks. Journal of Neuroscience Methods, 293, 53-58. doi: 10.1016/j.jneumeth.2017.08.018 |
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2017 Journal Article Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogrammingKnaupp, Anja S., Buckberry, Sam, Pflueger, Jahnvi, Lim, Sue Mei, Ford, Ethan, Larcombe, Michael R., Rossello, Fernando J., de Mendoza, Alex, Alaei, Sara, Firas, Jaber, Holmes, Melissa L., Nair, Shalima S., Clark, Susan J., Nefzger, Christian M., Lister, Ryan and Polo, Jose M. (2017). Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming. Cell Stem Cell, 21 (6), 834-845+. doi: 10.1016/j.stem.2017.11.007 |
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2017 Journal Article Cell type of origin dictates the route to pluripotencyNefzger, Christian M., Rossello, Fernando J., Chen, Joseph, Liu, Xiaodong, Knaupp, Anja S., Firas, Jaber, Paynter, Jacob M., Pflueger, Jahnvi, Buckberry, Sam, Lim, Sue Mei, Williams, Brenda, Alaei, Sara, Faye-Chauhan, Keshav, Petretto, Enrico, Nilsson, Susan K., Lister, Ryan, Ramialison, Mirana, Powell, David R., Rackham, Owen J. L. and Polo, Jose M. (2017). Cell type of origin dictates the route to pluripotency. Cell Reports, 21 (10), 2649-2660. doi: 10.1016/j.celrep.2017.11.029 |
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2017 Journal Article Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes (vol 18, pg 552, 2017)Marino, Eliana, Richards, James L., McLeod, Keiran H., Stanley, Dragana, Yap, Yu Anne, Knight, Jacinta, McKenzie, Craig, Kranich, Jan, Oliveira, Ana Carolina, Rossello, Fernando J., Krishnamurthy, Balasubramanian, Nefzger, Christian M., Macia, Laurence, Thorburn, Alison, Baxter, Alan G., Morahan, Grant, Wong, Lee H., Polo, Jose M., Moore, Robert J., Lockett, Trevor J., Clarke, Julie M., Topping, David L., Harrison, Leonard C. and Mackay, Charles R. (2017). Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes (vol 18, pg 552, 2017). Nature Immunology, 18 (11), 1271-1271. doi: 10.1038/ni1117-1271c |
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2017 Journal Article Comprehensive characterization of distinct states of human naive pluripotency generated by reprogrammingLiu, Xiaodong, Nefzger, Christian M., Rossello, Fernando J., Chen, Joseph, Knaupp, Anja S., Firas, Jaber, Ford, Ethan, Pflueger, Jahnvi, Paynter, Jacob M., Chy, Hun S., O'Brien, Carmel M., Huang, Cheng, Mishra, Ketan, Hodgson-Garms, Margeaux, Jansz, Natasha, Williams, Sarah M., Blewitt, Marnie E., Nilsson, Susan K., Schittenhelm, Ralf B., Laslett, Andrew L., Lister, Ryan and Polo, Jose M. (2017). Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming. Nature Methods, 14 (11), 1055-1062+. doi: 10.1038/NMETH.4436 |
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2017 Journal Article Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes (vol 18, pg 552, 2017)Marino, Eliana, Richards, James L., McLeod, Keiran H., Stanley, Dragana, Yap, Yu Anne, Knight, Jacinta, McKenzie, Craig, Kranich, Jan, Oliveira, Ana Carolina, Rossello, Fernando J., Krishnamurthy, Balasubramanian, Nefzger, Christian M., Macia, Laurence, Thorburn, Alison, Baxter, Alan G., Morahan, Grant, Wong, Lee H., Polo, Jose M., Moore, Robert J., Lockett, Trevor J., Clarke, Julie M., Topping, David L., Harrison, Leonard C. and Mackay, Charles R. (2017). Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes (vol 18, pg 552, 2017). Nature Immunology, 18 (8), 951-951. doi: 10.1038/ni0817-951c |
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2017 Journal Article Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetesMarino, Eliana, Richards, James L., McLeod, Keiran H., Stanley, Dragana, Yap, Yu Anne, Knight, Jacinta, McKenzie, Craig, Kranich, Jan, Oliveira, Ana Carolina, Rossello, Fernando J., Krishnamurthy, Balasubramanian, Nefzger, Christian M., Macia, Laurence, Thorburn, Alison, Baxter, Alan G., Morahan, Grant, Wong, Lee H., Polo, Jose M., Moore, Robert J., Lockett, Trevor J., Clarke, Julie M., Topping, David L., Harrison, Leonard C. and Mackay, Charles R. (2017). Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes. Nature Immunology, 18 (5), 552-562. doi: 10.1038/ni.3713 |
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2017 Journal Article DEAD-box RNA binding protein DDX5: not a black-box during reprogrammingNefzger, Christian M. and Polo, Jose M. (2017). DEAD-box RNA binding protein DDX5: not a black-box during reprogramming. Cell Stem Cell, 20 (4), 419-420. doi: 10.1016/j.stem.2017.03.006 |
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2017 Journal Article New monoclonal antibodies to defined cell surface proteins on human pluripotent stem cellsO'Brien, Carmel M., Chy, Hun S., Zhou, Qi, Blumenfeld, Shiri, Lambshead, Jack W., Liu, Xiaodong, Kie, Joshua, Capaldo, Bianca D., Chung, Tung-Liang, Adams, Timothy E., Tram Phan,, Bentley, John D., McKinstry, William J., Oliva, Karen, McMurrick, Paul J., Wang, Yu-Chieh, Rossello, Fernando J., Lindeman, Geoffrey J., Chen, Di, Jarde, Thierry, Clark, Amander T., Abud, Helen E., Visvader, Jane E., Nefzger, Christian M., Polo, Jose M., Loring, Jeanne F. and Laslett, Andrew L. (2017). New monoclonal antibodies to defined cell surface proteins on human pluripotent stem cells. Stem Cells, 35 (3), 626-640. doi: 10.1002/stem.2558 |
