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2024 Journal Article Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updatingChiaravallotti, Isabella, Lin, Jennifer, Arief, Vivi, Jahufer, Zulfi, Osorno, Juan M., McClean, Phil, Jarquin, Diego and Hoyos-Villegas, Valerio (2024). Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updating. Plant Genome, 17 (1) e20388. doi: 10.1002/tpg2.20388 |
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2023 Journal Article The application of Fourier Transform Infra-Red spectrometry to assess the impact of changes in photosynthetic photon flux on cell wall components and turf quality of different cultivars of Cynodon grassesBrown, Christopher W., Jie, Marcus Wee Qi, Pearce, William, Arief, Vivi, Dayananda, Buddhi, Lambrides, Christopher J. and Grof, Christopher P. L. (2023). The application of Fourier Transform Infra-Red spectrometry to assess the impact of changes in photosynthetic photon flux on cell wall components and turf quality of different cultivars of Cynodon grasses. Grass Research, 3 (9) 9. doi: 10.48130/gr-2023-0009 |
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2023 Journal Article Simulations of rate of genetic gain in dry bean breeding programsLin, Jennifer, Arief, Vivi, Jahufer, Zulfi, Osorno, Juan, McClean, Phil, Jarquin, Diego and Hoyos-Villegas, Valerio (2023). Simulations of rate of genetic gain in dry bean breeding programs. Theoretical and Applied Genetics, 136 (1) 14, 1-22. doi: 10.1007/s00122-023-04244-x |
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2022 Journal Article Visualising the pattern of long‐term genotype performance by leveraging a genomic prediction modelArief, Vivi N., DeLacy, Ian H., Payne, Thomas and Basford, Kaye E. (2022). Visualising the pattern of long‐term genotype performance by leveraging a genomic prediction model. Australian and New Zealand Journal of Statistics, 64 (2), 297-312. doi: 10.1111/anzs.12362 |
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2021 Journal Article Deterministic and stochastic modelling of impacts from genomic selection and phenomics on genetic gain for perennial ryegrass dry matter yieldJahufer, M. Z. Z., Arojju, Sai Krishna, Faville, Marty J., Ghamkhar, Kioumars, Arief, Vivi, Yang, Wen-Hsi, Luo, Dongwen, Sun, Mingzhu, DeLacy, Ian H., Griffiths, Andrew G., Eady, Colin, Clayton, Will, Stewart, Alan V., George, Richard M., Hoyos-Villegas, Valerio, Basford, Kaye E. and Barrett, Brent (2021). Deterministic and stochastic modelling of impacts from genomic selection and phenomics on genetic gain for perennial ryegrass dry matter yield. Scientific Reports, 11 (1) 13265, 1-18. doi: 10.1038/s41598-021-92537-w |
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2020 Journal Article Maternal and infant predictors of infant mortality in California, 2007–2015Ratnasiri, Anura W. G., Lakshminrusimha, Satyan, Dieckmann, Ronald A., Lee, Henry C., Gould, Jeffrey B., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., DiLibero, Ralph J. and Basford, Kaye E. (2020). Maternal and infant predictors of infant mortality in California, 2007–2015. PloS One, 15 (8) e0236877, e0236877. doi: 10.1371/journal.pone.0236877 |
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2020 Journal Article Smoking during pregnancy and adverse birth and maternal outcomes in California, 2007 to 2016Ratnasiri, Anura W. G., Gordon, Lauren, Dieckmann, Ronald A., Lee, Henry C., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Lakshminrusimha, Satyan, DiLibero, Ralph J. and Basford, Kaye E. (2020). Smoking during pregnancy and adverse birth and maternal outcomes in California, 2007 to 2016. American Journal of Perinatology, 37 (13), 1364-1376. doi: 10.1055/s-0039-1693689 |
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2020 Journal Article Modeling and simulation of recurrent phenotypic and genomic selections in plant breeding under the presence of epistasisAli, Mohsin, Zhang, Luyan, DeLacy, Ian, Arief, Vivi, Dieters, Mark, Pfeiffer, Wolfgang H., Wang, Jiankang and Li, Huihui (2020). Modeling and simulation of recurrent phenotypic and genomic selections in plant breeding under the presence of epistasis. Crop Journal, 8 (5), 866-877. doi: 10.1016/j.cj.2020.04.002 |
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2019 Journal Article Trends in maternal prepregnancy body mass index (BMI) and its association with birth and maternal outcomes in California, 2007–2016: a retrospective cohort studyRatnasiri, Anura W. G., Lee, Henry C., Lakshminrusimha, Satyan, Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Yang, Jo-Shing, DiLibero, Ralph J., Logan, Julia and Basford, Kaye E. (2019). Trends in maternal prepregnancy body mass index (BMI) and its association with birth and maternal outcomes in California, 2007–2016: a retrospective cohort study. PLoS ONE, 14 (9) e0222458, e0222458. doi: 10.1371/journal.pone.0222458 |
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2019 Journal Article Phenotypic diversity and marker-trait association studies under heat stress in tomato (Solanum lycopersicum L.)Alsamir, Muhammed, Ahmad, Nabil, Arief, Vivi, Mahmood, Tariq and Trethowan, Richard (2019). Phenotypic diversity and marker-trait association studies under heat stress in tomato (Solanum lycopersicum L.). Australian Journal of Crop Science, 13 (4), 578-587. doi: 10.21475/ajcs.19.13.04.p1581 |
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2019 Journal Article Utilization of multiyear plant breeding data to better predict genotype performanceArief, Vivi N., Desmae, Haile, Hardner, Craig, DeLacy, Ian H., Gilmour, Arthur, Bull, Jason K. and Basford, Kaye E. (2019). Utilization of multiyear plant breeding data to better predict genotype performance. Crop Science, 59 (2), 480-490. doi: 10.2135/cropsci2018.03.0182 |
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2019 Journal Article QuLinePlus: extending plant breeding strategy and genetic model simulation to cross-pollinated populations—case studies in forage breedingHoyos-Villegas, Valerio, Arief, Vivi N, Yang, Wen-Hsi, Sun, Mingzhu, DeLacy, Ian H, Barrett, Brent A, Jahufer, Zulfi and Basford, Kaye E (2019). QuLinePlus: extending plant breeding strategy and genetic model simulation to cross-pollinated populations—case studies in forage breeding. Heredity, 122 (5), 684-695. doi: 10.1038/s41437-018-0156-0 |
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2018 Journal Article Temporal trends, patterns, and predictors of preterm birth in California from 2007 to 2016, based on the obstetric estimate of gestational ageRatnasiri, Anura W.G., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Lakshminrusimha, Satyan, Halliday, Laura A., DiLibero, Ralph J. and Basford, Kaye E. (2018). Temporal trends, patterns, and predictors of preterm birth in California from 2007 to 2016, based on the obstetric estimate of gestational age. Maternal Health, Neonatology and Perinatology, 4 (1) 25, 25. doi: 10.1186/s40748-018-0094-0 |
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2018 Journal Article Recent trends, risk factors, and disparities in low birth weight in California, 2005-2014: a retrospective studyRatnasiri, Anura W. G., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Halliday, Laura A., DiLibero, Ralph J. and Basford, Kaye E. (2018). Recent trends, risk factors, and disparities in low birth weight in California, 2005-2014: a retrospective study. Maternal Health, Neonatology and Perinatology, 4 (1) 15, 15. doi: 10.1186/s40748-018-0084-2 |
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2017 Journal Article Application of a dendrogram seriation algorithm to extract pattern from plant breeding dataArief, Vivi Noviati, DeLacy, I. H., Basford, K. E. and Dieters, M. J. (2017). Application of a dendrogram seriation algorithm to extract pattern from plant breeding data. Euphytica, 213 (4) 85. doi: 10.1007/s10681-017-1870-z |
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2015 Journal Article Evaluating testing strategies for plant breeding field trials: redesigning a CIMMYT international wheat nurseryArief, Vivi N., DeLacy, Ian H., Crossa, Jose, Payne, Thomas, Singh, Ravi, Braun, Hans-J., Tian, Ting, Basford, Kaye E. and Dieters, Mark J. (2015). Evaluating testing strategies for plant breeding field trials: redesigning a CIMMYT international wheat nursery. Crop Science, 55 (1), 164-177. doi: 10.2135/cropsci2014.06.0415 |
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2015 Journal Article A genomic selection index applied to simulated and real dataCeron-Rojas, J. Jesus, Crossa, Jose, Arief, Vivi N., Basford, Kaye, Rutkoski, Jessica, Jarquin, Diego, Alvarado, Gregorio, Beyene, Yoseph, Semagn, Kassa and DeLacy, Ian (2015). A genomic selection index applied to simulated and real data. G3: Genes, Genomes, Genetics, 5 (10), 2155-2164. doi: 10.1534/g3.115.019869 |
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2013 Journal Article Exploring wheat landraces for rust resistance using a single marker scanBansal, Urmil K., Arief, Vivi N., DeLacy, Ian H. and Bariana, Harbans S. (2013). Exploring wheat landraces for rust resistance using a single marker scan. Euphytica, 194 (2), 219-233. doi: 10.1007/s10681-013-0940-0 |
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2013 Journal Article Using molecular marker order to compare genetic structure in plant populations undergoing selectionArief, Vivi N., DeLacy, Ian H., Wenzl, Peter, Dreisigacker, Susanne, Crossa, Jose, Dieters, Mark J. and Basford, Kaye E. (2013). Using molecular marker order to compare genetic structure in plant populations undergoing selection. Journal of Environmental Statistics, 4 (4). |
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2012 Journal Article Grain dormancy QTL identified in a doubled haploid barley population derived from two non-dormant parentsHickey, L.T., Lawson, W., Arief, V.N., Fox, G., Franckowiak, J. and Dieters, M.J. (2012). Grain dormancy QTL identified in a doubled haploid barley population derived from two non-dormant parents. Euphytica, 188 (1), 133-122. doi: 10.1007/s10681-011-0577-9 |
