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2024

Conference Publication

Multivariate characterisation of envirotypes for wheat G×E in Australian Variety Trials

Fernandez, Javier A., Hu, Pengcheng, Arief, Vivi, Gho, Carla, Ramakers, Jip, Hemerik, Jesse, Boer, Martin, van Eeuwijk, Fred and Chapman, Scott (2024). Multivariate characterisation of envirotypes for wheat G×E in Australian Variety Trials. GxExM Symposium III, Wageningen, Netherlands, 30-31 October 2024.

Multivariate characterisation of envirotypes for wheat G×E in Australian Variety Trials

2024

Conference Publication

Environment characterisation of wheat national variety trials in Australia

Fernandez, Javier A., Arief, Vivi, Hu, Pengcheng, Zheng, Bangyou, Gho, Carla, Ramakers, Jip, Boer, Martin, van Eeuwijk, Fred and Chapman, Scott (2024). Environment characterisation of wheat national variety trials in Australia. 3rd International Wheat Congress, Perth, WA, Australia, 22-27 September 2024.

Environment characterisation of wheat national variety trials in Australia

2024

Journal Article

Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updating

Chiaravallotti, Isabella, Lin, Jennifer, Arief, Vivi, Jahufer, Zulfi, Osorno, Juan M., McClean, Phil, Jarquin, Diego and Hoyos-Villegas, Valerio (2024). Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updating. Plant Genome, 17 (1) e20388. doi: 10.1002/tpg2.20388

Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updating

2024

Conference Publication

Evaluating water use efficiency and shoot-root traits in Australian mungbean cultivars under different levels of water availability

Zhong, Yayue, Singh, Vijaya, Dieters, Mark, Basford, Kaye, Chauhan, Yash, Hunter, Malcolm and Arief, Vivi (2024). Evaluating water use efficiency and shoot-root traits in Australian mungbean cultivars under different levels of water availability. 11th International Conference on Legume Genetics and Genomics (ICLGG), Brisbane, QLD Australia, 30 September - 3 October 2024.

Evaluating water use efficiency and shoot-root traits in Australian mungbean cultivars under different levels of water availability

2023

Conference Publication

Predicting yield in multi-environment breeding trials using penalized regression and multiple-covariate random-regression models

Ramakers, Jip, Hemerik, Jesse, Boer, Martin, Bustos-Korts, Daniela, Fernandez, Javier A., Pengcheng Hu, Noviati, Vivi, Chapman, Scott and van Eeuwijk, Fred (2023). Predicting yield in multi-environment breeding trials using penalized regression and multiple-covariate random-regression models. Channel Network Conference 2023, Wageningen, Netherlands, 23-25 August 2023.

Predicting yield in multi-environment breeding trials using penalized regression and multiple-covariate random-regression models

2023

Conference Publication

Environment characterisation of sorghum GxE in Australia: Integrating APSIM and satellite imagery in NVT case study

Fernandez, Javier A., Garba, Ismail, Hu, Pengcheng, Segura Pinzon, Camilo, Arief, Vivi, Gho, Carla, Ramakers, Jip, Hemerik, Jesse, Zheng, Bangyou, van Eeuwijk, Fred and Chapman, Scott C. (2023). Environment characterisation of sorghum GxE in Australia: Integrating APSIM and satellite imagery in NVT case study. AuSoRGM, Toowoomba, QLD, Australia, 8-9 August 2023.

Environment characterisation of sorghum GxE in Australia: Integrating APSIM and satellite imagery in NVT case study

2023

Conference Publication

Environment characterisation of sorghum (Sorghum bicolor L.) crops using climate, satellite imagery, and crop simulation modelling in Australia

Javier A. Fernandez, Hu, Pengcheng, Chen, Zhi, Gho Brito, Carla, Segura Pinzon, Camilo, Chen, Qiaomin, Smith, Daniel, Arief, Vivi, Zheng, Bangyou, Potgieter, Andries, Zhao, Yan, Ramakers, Jip, Hemerik, Jesse, van Eeuwijk, Fred and Chapman, Scott C. (2023). Environment characterisation of sorghum (Sorghum bicolor L.) crops using climate, satellite imagery, and crop simulation modelling in Australia. Global Sorghum Conference, Montpellier, France, 5-9 June 2023.

Environment characterisation of sorghum (Sorghum bicolor L.) crops using climate, satellite imagery, and crop simulation modelling in Australia

2023

Conference Publication

Using cellular composition estimated from bulk RNA-seq data to suggest cellular level markers for melanoma survival

Zhang, Min, Basford, Kaye, Arief, Vivi, McLachlan, Geoff and Nguyen, Quan (2023). Using cellular composition estimated from bulk RNA-seq data to suggest cellular level markers for melanoma survival. IBS-AR/SEEM Conference, Bay of Islands, Aotearoa, New Zealand, 27 November - 1 December 2023.

Using cellular composition estimated from bulk RNA-seq data to suggest cellular level markers for melanoma survival

2023

Journal Article

Simulations of rate of genetic gain in dry bean breeding programs

Lin, Jennifer, Arief, Vivi, Jahufer, Zulfi, Osorno, Juan, McClean, Phil, Jarquin, Diego and Hoyos-Villegas, Valerio (2023). Simulations of rate of genetic gain in dry bean breeding programs. Theoretical and Applied Genetics, 136 (1) 14, 1-22. doi: 10.1007/s00122-023-04244-x

Simulations of rate of genetic gain in dry bean breeding programs

2023

Journal Article

The application of Fourier Transform Infra-Red spectrometry to assess the impact of changes in photosynthetic photon flux on cell wall components and turf quality of different cultivars of Cynodon grasses

Brown, Christopher W., Jie, Marcus Wee Qi, Pearce, William, Arief, Vivi, Dayananda, Buddhi, Lambrides, Christopher J. and Grof, Christopher P. L. (2023). The application of Fourier Transform Infra-Red spectrometry to assess the impact of changes in photosynthetic photon flux on cell wall components and turf quality of different cultivars of Cynodon grasses. Grass Research, 3 (9) 9. doi: 10.48130/gr-2023-0009

The application of Fourier Transform Infra-Red spectrometry to assess the impact of changes in photosynthetic photon flux on cell wall components and turf quality of different cultivars of Cynodon grasses

2022

Conference Publication

Exploratory data analysis of TCGA skin cutaneous melanoma RNA-seq data

Zhang, Min, Arief, Vivi, McLachlan, Geoffrey, Nguyen, Quan and Basford, Kaye (2022). Exploratory data analysis of TCGA skin cutaneous melanoma RNA-seq data. Australasian Applied Statistics Conference (AASC), Inverloch, VIC Australia, 28 November - 2 December 2022.

Exploratory data analysis of TCGA skin cutaneous melanoma RNA-seq data

2022

Conference Publication

Analysis of longitudinal, image-based canopy cover estimates as a quality indicator in wheat variety trials

Ramakers, Jip, Bustos-Korts, Daniela, Hemerik, Jesse, Boer, Martin, Grunefeld, Swaantje, Hu, Pengcheng, Arief, Vivi, van Eeuwijk, Fred and Chapman, Scott (2022). Analysis of longitudinal, image-based canopy cover estimates as a quality indicator in wheat variety trials. XVIIIth Eucarpia Biometrics in Plant Breeding Conference, Gif-sur-Yvette, France, 21-23 September 2022.

Analysis of longitudinal, image-based canopy cover estimates as a quality indicator in wheat variety trials

2022

Conference Publication

Integration of data across scales to predict genotype performance in National Variety Trials

Chapman, Scott, Noviati, Vivi, Hu, Pengcheng, McLaren, Connar, Smith, Daniel, Choudhury, Malini, Chen, Zhi, Grunfeld, Swaantje, Zheng, Bangyou, van Eeuwijk, Fred, Bustos-Korts, Daniela, Boer, Martin, Hemerik, Jesse and Ramakers, Jip (2022). Integration of data across scales to predict genotype performance in National Variety Trials. Australasian Plant Breeding Conference, Gold Coast, QLD Australia, 9-11 May 2022.

Integration of data across scales to predict genotype performance in National Variety Trials

2022

Journal Article

Visualising the pattern of long‐term genotype performance by leveraging a genomic prediction model

Arief, Vivi N., DeLacy, Ian H., Payne, Thomas and Basford, Kaye E. (2022). Visualising the pattern of long‐term genotype performance by leveraging a genomic prediction model. Australian and New Zealand Journal of Statistics, 64 (2), 297-312. doi: 10.1111/anzs.12362

Visualising the pattern of long‐term genotype performance by leveraging a genomic prediction model

2022

Conference Publication

Plant breeding simulation studies in the common bean (Phaseolus vulgaris L.)

Lin, Jennifer, Hoyos-Villegas, Valerio and Arief, Vivi N. (2022). Plant breeding simulation studies in the common bean (Phaseolus vulgaris L.). Plant and Animal Genome, San Diego, CA USA, 8-12 January 2022.

Plant breeding simulation studies in the common bean (Phaseolus vulgaris L.)

2022

Conference Publication

Incorporating individual with missing pedigree information in a pedigree-genomic relationship matrix

Arief, Vivi , Mellor, Vincent and Dieters, Mark (2022). Incorporating individual with missing pedigree information in a pedigree-genomic relationship matrix. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

Incorporating individual with missing pedigree information in a pedigree-genomic relationship matrix

2022

Conference Publication

Screening of crown rot resistance in durum wheat

Zhong, Yayue , Arief, Vivi N. and Dieters, Mark (2022). Screening of crown rot resistance in durum wheat. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

Screening of crown rot resistance in durum wheat

2022

Conference Publication

Constant water table rainproof pot system: An effective outdoor method to measure water use efficiency

Zhong, Yayue, Hunter, Malcolm, Singh, Vijaya, Dieters, Mark, Basford, Kaye, Chauhan, Yash and Arief, Vivi (2022). Constant water table rainproof pot system: An effective outdoor method to measure water use efficiency. TropAg Conference, Brisbane, QLD, Australia, 31 October - 2 November 2022.

Constant water table rainproof pot system: An effective outdoor method to measure water use efficiency

2022

Conference Publication

Carinata (Brassica carinata) multi-purpose crop for the future: fumigation, feed, food and fuel

van Herwaarden, Anthony , Bennett, Rick , Potter, Trent , Lambrides, Christopher , Gororo, Nelson , Krakowski, Hank , Arief, Vivi , Leveque, Winslow and Salisbury, Pillip (2022). Carinata (Brassica carinata) multi-purpose crop for the future: fumigation, feed, food and fuel. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

Carinata (Brassica carinata) multi-purpose crop for the future: fumigation, feed, food and fuel

2022

Conference Publication

Genomic Selection to improve quantitative resistance to Blackleg (Leptosphaeria maculans ) in Canola (Brassica napus )

Lambrides, Christopher , Liddle, Willow , Tabah, David , Hardner, Craig and Arief, Vivi (2022). Genomic Selection to improve quantitative resistance to Blackleg (Leptosphaeria maculans ) in Canola (Brassica napus ). Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

Genomic Selection to improve quantitative resistance to Blackleg (Leptosphaeria maculans ) in Canola (Brassica napus )