Overview
Background
Scott Beatson is an Associate Professor and NHMRC Career Development Fellow at The University of Queensland (UQ). He specializes in bacterial pathogenomics: using whole-genome sequencing to investigate transmission, pathogenesis and antibiotic resistance in bacteria. Recent work from his group includes genomic analyses of pandrug resistant enterobacteriaceae and the multidrug resistant Escherichia coli ST131 pandemic clone. He was awarded a PhD from UQ for his work in bacterial pathogenesis in 2002 and developed his career in bacterial genomics in the United Kingdom with the support of fellowships from the Royal Commission for the Exhibition of 1851 (University of Oxford) and the UK Medical Research Council (University of Birmingham). Since returning to Australia he has held fellowships from both the NHMRC and ARC and has led a successful research group in the School of Chemistry and Molecular Biosciences at UQ since 2008. He is also a member of the Australian Infectious Diseases Research Centre and the Australian Centre for Ecogenomics. In 2016 he received the Frank Fenner Award from the Australian Society for Microbiology in recognition of his contribution to microbiology research in Australia.
Availability
- Associate Professor Scott Beatson is:
- Available for supervision
Fields of research
Qualifications
- Bachelor of Science, University of Otago
- Masters (Coursework) of Science, University of Otago
- Doctor of Philosophy, The University of Queensland
- Masters (Coursework) of Science, The University of Manchester
Research impacts
In the past five years the Beatson Lab has focussed on clinically relevant pathogens and exploiting genomic technologies in the clinical setting. His group regularly reports the genome analyses of antibiotic resistant bacteria to the major tertiary hospitals in Brisbane as part of Queensland Genomics. He is the senior author of a phylogenomic study of E. coli ST131 in PNAS (2014; 312 citations), and joint first author of a landmark publication on the E. coli O157 genome (2006; 413 citations). Genome analysis software developed in his group is widely used i.e. BRIG (2011; 1026 citations) and EasyFig (2011; 756 citations). Since 1998 he has co-authored more than 120 journal articles (9756 citations), including 61 in the past 5 years and 43 with greater than 50 citations (Google Scholar 22/08/19). He regularly publishes in high-impact, general interest or specialist medical/microbiology journals including Science, PNAS, Clin Infect Dis, Nat Commun and MBio.
Works
Search Professor Scott Beatson’s works on UQ eSpace
2020
Journal Article
Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB
Hancock, Steven J., Phan, Minh-Duy, Luo, Zhenyao, Lo, Alvin W., Peters, Kate M., Nhu, Nguyen Thi Khanh, Forde, Brian M., Whitfield, Jason, Yang, Ji, Strugnell, Richard A., Paterson, David L., Walsh, Timothy R., Kobe, Bostjan, Beatson, Scott A. and Schembri, Mark A. (2020). Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB. Nature Microbiology, 5 (11), 1340-1348. doi: 10.1038/s41564-020-0775-0
2020
Other Outputs
Genomic surveillance, characterisation and intervention of a carbapenem-resistant Acinetobacter baumannii outbreak in critical care
Roberts, Leah W., Forde, Brian M., Hurst, Trish, Ling, Weiping, Nimmo, Graeme R., Bergh, Haakon, George, Narelle, Hajkowicz, Krispin, McNamara, John F, Lipman, Jeffrey, Permana, Budi, Schembri, Mark A., Paterson, David, Beatson, Scott A. and Harris, Patrick N. A. (2020). Genomic surveillance, characterisation and intervention of a carbapenem-resistant Acinetobacter baumannii outbreak in critical care. doi: 10.1101/2020.08.10.20166652
2020
Journal Article
Fatal respiratory diphtheria caused by ß-lactam–resistant corynebacterium diphtheriae
Forde, Brian M., Henderson, Andrew, Playford, Elliott G., Looke, David, Henderson, Belinda C., Watson, Catherine, Steen, Jason A., Sidjabat, Hanna E., Laurie, Gordon, Muttaiyah, Sharmini, Nimmo, Graeme R., Lampe, Guy, Smith, Helen, Jennison, Amy V., McCall, Brad, Carroll, Heidi, Cooper, Matthew A., Paterson, David L. and Beatson, Scott A. (2020). Fatal respiratory diphtheria caused by ß-lactam–resistant corynebacterium diphtheriae. Clinical Infectious Diseases, 73 (11), e4531-e4538. doi: 10.1093/cid/ciaa1147
2020
Journal Article
Antimicrobial resistance in ESKAPE pathogens
De Oliveira, David M. P., Forde, Brian M., Kidd, Timothy J., Harris, Patrick N. A., Schembri, Mark A., Beatson, Scott A., Paterson, David L. and Walker, Mark J. (2020). Antimicrobial resistance in ESKAPE pathogens. Clinical Microbiology Reviews, 33 (3) e00181-19, e00181-19. doi: 10.1128/cmr.00181-19
2020
Other Outputs
Strain and lineage-level methylome heterogeneity in the multi-drug resistant pathogenic Escherichia coli ST101 clone
Ashcroft, Melinda M., Forde, Brian M., Phan, Minh-Duy, Peters, Kate M., Roberts, Leah W., Chan, Kok-Gan, Chong, Teik Min, Yin, Wai-Fong, Paterson, David L., Walsh, Timothy R., Schembri, Mark A. and Beatson, Scott A. (2020). Strain and lineage-level methylome heterogeneity in the multi-drug resistant pathogenic Escherichia coli ST101 clone. doi: 10.1101/2020.06.07.138552
2020
Other Outputs
Genomic characterisation and context of the blaNDM-1 carbapenemase in Escherichia coli ST101
Ashcroft, Melinda M., Forde, Brian M., Phan, Minh-Duy, Peters, Kate M., Henderson, Andrew, Hancock, Steven J., Roberts, Leah W., White, Rhys T., Chan, Kok-Gan, Chong, Teik Min, Yin, Wai-Fong, Paterson, David L., Walsh, Timothy R., Schembri, Mark A. and Beatson, Scott A. (2020). Genomic characterisation and context of the blaNDM-1 carbapenemase in Escherichia coli ST101. doi: 10.1101/860726
2020
Journal Article
Genomic investigation reveals contaminated detergent as the source of an Extended-Spectrum-β-Lactamase-producing Klebsiella michiganensis outbreak in a neonatal unit
Chapman, Paul, Forde, Brian M., Roberts, Leah W., Bergh, Haakon, Vesey, Debra, Jennison, Amy V., Moss, Susan, Paterson, David L., Beatson, Scott A. and Harris, Patrick N. A. (2020). Genomic investigation reveals contaminated detergent as the source of an Extended-Spectrum-β-Lactamase-producing Klebsiella michiganensis outbreak in a neonatal unit. Journal of Clinical Microbiology, 58 (5) e01980. doi: 10.1128/jcm.01980-19
2020
Conference Publication
Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering
Lee, Brendon, Almeida, Deepak, Afriat-Jurnou, Livnat, Aung, Htin, Forde, Brian, Harold, Liam, Hards, Kiel, Pidot, Sacha, Ahmed, Hafna, Mohamed, Elaaf, Taylor, Mathew, West, Nicholas, Stinear, Timothy, Greening, Chris, Beatson, Scott, Cook, Gregory, Nuermberger, Eric and Jackson, Colin (2020). Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering. Annual Meeting on Experimental Biology, San Diego, CA, United States, 4-7 April 2020. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1096/fasebj.2020.34.s1.04923
2020
Journal Article
Phase variation in latB associated with a fatal Pasteurella multocida outbreak in captive squirrel gliders
Omaleki, Lida, Beatson, Scott A., Thomrongsuwannakij, Thotsapol, Blackall, Patrick J., Buller, Nicky B., Hair, Sam D., Vitali, Simone D., Wallace, Alisa M., Turni, Conny and Forde, Brian M. (2020). Phase variation in latB associated with a fatal Pasteurella multocida outbreak in captive squirrel gliders. Veterinary Microbiology, 243 108612, 108612. doi: 10.1016/j.vetmic.2020.108612
2020
Journal Article
Using genomics to understand inter- and intra- outbreak diversity of Pasteurella multocida isolates associated with fowl cholera in meat chickens
Omaleki, Lida, Blackall, Patrick J., Cuddihy, Thom, Beatson, Scott A., Forde, Brian M. and Turni, Conny (2020). Using genomics to understand inter- and intra- outbreak diversity of Pasteurella multocida isolates associated with fowl cholera in meat chickens. Microbial Genomics, 6 (3) 000346, 1-8. doi: 10.1099/mgen.0.000346
2020
Journal Article
Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering
Lee, Brendon M., Harold, Liam K., Almeida, Deepak V., Afriat-Jurnou, Livnat, Aung, Htin Lin, Forde, Brian M., Hards, Kiel, Pidot, Sacha J., Ahmed, F. Hafna, Mohamed, A. Elaaf, Taylor, Matthew C., West, Nicholas P., Stinear, Timothy P., Greening, Chris, Beatson, Scott A., Nuermberger, Eric L., Cook, Gregory M. and Jackson, Colin J. (2020). Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering. PLoS Pathogens, 16 (2) e1008287, e1008287. doi: 10.1371/journal.ppat.1008287
2020
Journal Article
Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei
Roberts, Leah W., Harris, Patrick N. A., Forde, Brian M., Ben Zakour, Nouri L., Catchpoole, Elizabeth, Stanton-Cook, Mitchell, Phan, Minh-Duy, Sidjabat, Hanna E., Bergh, Haakon, Heney, Claire, Gawthorne, Jayde A., Lipman, Jeffrey, Allworth, Anthony, Chan, Kok-Gan, Chong, Teik Min, Yin, Wai-Fong, Schembri, Mark A., Paterson, David L. and Beatson, Scott A. (2020). Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei. Nature Communications, 11 (1) 466, 466. doi: 10.1038/s41467-019-14139-5
2019
Journal Article
Genomic analysis of carbapenemase-producing Enterobacteriaceae in Queensland reveals widespread transmission of blaIMP-4 on an IncHI2 plasmid
Roberts, Leah W., Catchpoole, Elizabeth, Jennison, Amy V., Bergh, Haakon, Hume, Anna, Heney, Claire, George, Narelle, Paterson, David L., Schembri, Mark A., Beatson, Scott A. and Harris, Patrick N. A. (2019). Genomic analysis of carbapenemase-producing Enterobacteriaceae in Queensland reveals widespread transmission of blaIMP-4 on an IncHI2 plasmid. Microbial Genomics, 6 (1) 000321. doi: 10.1099/mgen.0.000321
2019
Other Outputs
A high quality reference genome for the fish pathogen Streptococcus iniae
Alsheikh-Hussain, Areej S., Zakour, Nouri L. Ben, Forde, Brian M., Silayeva, Oleksandra, Barnes, Andrew C. and Beatson, Scott A. (2019). A high quality reference genome for the fish pathogen Streptococcus iniae. doi: 10.1101/2019.12.17.880476
2019
Journal Article
Complex multilevel control of hemolysin production by uropathogenic Escherichia coli
Nhu, Nguyen Thi Khanh, Phan, Minh-Duy, Forde, Brian M., Murthy, Ambika M. V., Peters, Kate M., Day, Christopher J., Poole, Jessica, Kidd, Timothy J., Welch, Rodney A., Jennings, Michael P., Ulett, Glen C., Sweet, Matthew J., Beatson, Scott A. and Schembri, Mark A. (2019). Complex multilevel control of hemolysin production by uropathogenic Escherichia coli. mBio, 10 (5) e02248-19. doi: 10.1128/mbio.02248-19
2019
Journal Article
Whole-genome sequencing as an improved means of investigating Neisseria gonorrhoeae treatment failures
Buckley, Cameron, Beatson, Scott A., Limnios, Athena, Lahra, Monica M., Whiley, David M. and Forde, Brian M. (2019). Whole-genome sequencing as an improved means of investigating Neisseria gonorrhoeae treatment failures. Sexual Health, 16 (5), 500-507. doi: 10.1071/SH19012
2019
Journal Article
SMRT sequencing reveals differential patterns of methylation in two O111:H- STEC isolates from a hemolytic uremic syndrome outbreak in Australia
Forde, Brian M., McAllister, Lauren J., Paton, James C., Paton, Adrienne W. and Beatson, Scott A. (2019). SMRT sequencing reveals differential patterns of methylation in two O111:H- STEC isolates from a hemolytic uremic syndrome outbreak in Australia. Scientific Reports, 9 (1) 9436, 9436. doi: 10.1038/s41598-019-45760-5
2019
Journal Article
Control of bacterial sulfite detoxification by conserved and species-specific regulatory circuits
Tan, Yi Jie Chelsea, Zhao, Chengzhi, Nasreen, Marufa, O'Rourke, Leo, Dhouib, Rabeb, Roberts, Leah, Wan, Ying, Beatson, Scott A. and Kappler, Ulrike (2019). Control of bacterial sulfite detoxification by conserved and species-specific regulatory circuits. Frontiers in Microbiology, 10 (MAY) 960, 960. doi: 10.3389/fmicb.2019.00960
2019
Other Outputs
The evolution of nitroimidazole antibiotic resistance in Mycobacterium tuberculosis
Lee, Brendon M., Almeida, Deepak V., Afriat-Jurnou, Livnat, Aung, Htin Lin, Forde, Brian M., Hards, Kiel, Pidot, Sacha J., Ahmed, F. Hafna, Mohamed, A. Elaaf, Taylor, Matthew C., West, Nicholas P., Stinear, Timothy P., Greening, Chris, Beatson, Scott A., Cook, Gregory M., Nuermberger, Eric L. and Jackson, Colin J. (2019). The evolution of nitroimidazole antibiotic resistance in Mycobacterium tuberculosis. doi: 10.1101/631127
2019
Journal Article
Novel insights into pasteurellosis in captive pinnipeds
Crawford, Rebecca L., Blyde, David, Blackall, Patrick J., Forde, Brian M., Beatson, Scott A., Harris, Louise M., Turni, Conny and Omaleki, Lida (2019). Novel insights into pasteurellosis in captive pinnipeds. Veterinary Microbiology, 231, 232-237. doi: 10.1016/j.vetmic.2019.03.017
Funding
Supervision
Availability
- Associate Professor Scott Beatson is:
- Available for supervision
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Supervision history
Current supervision
-
Doctor Philosophy
Preliminary study to develop workflows for use of low-cost state of the art technology and big data to diagnose bacterial fish diseases in resource limited settings using Streptococcosis as a model
Associate Advisor
Other advisors: Dr Oleksandra Rudenko, Professor Andrew Barnes
-
Doctor Philosophy
Using low-cost state of the art technology and big data to help smallholder fish farmers to diagnose and control disease
Associate Advisor
Other advisors: Dr Oleksandra Rudenko, Professor Andrew Barnes
-
Doctor Philosophy
Preliminary study to develop workflows for use of low-cost state of the art technology and big data to diagnose bacterial fish diseases in resource limited settings using Streptococcosis as a model
Associate Advisor
Other advisors: Dr Oleksandra Rudenko, Professor Andrew Barnes
Completed supervision
-
2022
Doctor Philosophy
Comparative Genomics of Extraintestinal Pathogenic Escherichia coli
Principal Advisor
Other advisors: Dr Brian Forde
-
2022
Doctor Philosophy
New approaches in visualising genomic data for surveillance and control of drug-resistant bacteria in healthcare settings
Principal Advisor
Other advisors: Dr Brian Forde
-
2019
Doctor Philosophy
Application of whole genome sequencing to characterise clinically significant multidrug resistant bacteria
Principal Advisor
Other advisors: Professor Mark Schembri
-
2019
Doctor Philosophy
Genomic characterization and evolutionary analysis of broad-host range aquatic pathogen Streptococcus iniae towards vaccine target development
Principal Advisor
Other advisors: Professor Andrew Barnes
-
2019
Doctor Philosophy
Evolution and function of mobile genetic elements and DNA methyltransferases in extraintestinal pathogenic Escherichia coli
Principal Advisor
Other advisors: Dr Brian Forde
-
-
2015
Doctor Philosophy
The diversification and evolution of Integrative and Conjugative Elements associated with MPFG Type IV Secretion Systems
Principal Advisor
-
-
2014
Doctor Philosophy
Investigation of type III effector proteins in enteric pathogens using profile Hidden Markov Models
Principal Advisor
-
2025
Doctor Philosophy
Preliminary study to develop workflows for use of low-cost state of the art technology and big data to diagnose bacterial fish diseases in resource limited settings using Streptococcosis as a model
Associate Advisor
Other advisors: Dr Oleksandra Rudenko, Professor Andrew Barnes
-
2019
Doctor Philosophy
Factors that influence Neisseria gonorrhoeae antimicrobial resistance and transmission in Australia
Associate Advisor
Other advisors: Dr Brian Forde, Associate Professor David Whiley
-
2018
Doctor Philosophy
Molecular and genomic analysis of multidrug resistant Uropathogenic Escherichia coli
Associate Advisor
Other advisors: Professor Mark Schembri
-
2014
Doctor Philosophy
Investigating the Virulence Potential of the Multidrug Resistant Uropathogenic Escherichia coli ST131 clone
Associate Advisor
Other advisors: Professor Mark Schembri
-
2012
Doctor Philosophy
Evolution of group A streptococci: impact on virulence capacity
Associate Advisor
Other advisors: Professor Mark Walker
-
2012
Doctor Philosophy
Molecular analysis of Acinetobacter baumannii isolates from an intensive care unit
Associate Advisor
Other advisors: Professor Mark Schembri
-
2011
Doctor Philosophy
Identification and characterisation of novel surface proteins of the urinary tract pathogen Staphylococcus saprophyticus
Associate Advisor
Other advisors: Professor Mark Schembri
Media
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