Overview
Background
I am an ARC Future Fellow and Group Leader at the Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland (UQ). I received my PhD (with distinction) from the University of Helsinki, Finland, in 2014 and joined UQ in 2015. My research has been supported by prestigious fellowships, including an Academy of Finland Postdoctoral Fellowship, ARC DECRA, UQ Amplify Fellowship and ARC Future Fellowship (2026).
My laboratory investigates the cellular mechanisms that sustain brain function and contribute to neurological disease. Our research challenges longstanding assumptions about brain energy metabolism by demonstrating that neurons use fatty acids to generate energy, revealing a previously underappreciated pathway supporting synaptic function and cognition. These discoveries open new avenues for understanding and potentially treating neurological disorders associated with impaired lipid metabolism and mitochondrial dysfunction.
Combining advanced imaging, molecular and cell biology, human induced pluripotent stem cell (iPSC) and organoid models, we investigate how genetic and environmental disturbances disrupt neuronal function. Our research spans inherited neurological and neurodevelopmental disorders, and viral infections.
Our goal is to translate fundamental discoveries into therapeutic strategies that restore neuronal function and improve outcomes for people living with neurological disease.
Availability
- Dr Merja Joensuu is:
- Available for supervision
- Media expert
Fields of research
Qualifications
- Doctor of Philosophy, University of Helsinki*
Research interests
-
Neuronal Fatty Acid Energy Metabolism
My research investigates how fatty acid metabolism and lipid-derived energy pathways support neuronal function and brain health. My laboratory discovered that DDHD2 regulates the release of endogenous saturated fatty acids that neurons can use to generate mitochondrial ATP energy, challenging the longstanding view that neuronal energy metabolism relies exclusively on glucose under normal physiological conditions. Importantly, we demonstrated that disruption of this pathway compromises neuronal energy production and synaptic function, while replenishing the missing fatty acids can restore these processes. These findings reveal a previously uncharacterized mechanism of neuronal energy regulation and identify a potential therapeutic target for neurological disorders associated with impaired lipid metabolism. Building on this discovery, my ARC Future Fellowship investigates how neuronal fatty acid metabolism supports brain energy homeostasis and metabolic resilience during ageing and disease. By integrating advanced imaging, lipidomics, metabolic profiling, and human iPSC and organoid models, we aim to translate these discoveries into new metabolic therapies for inherited and neurodegenerative disorders.
-
Protein Lipidation in Neuronal Function, and in Genetic and Infectious Diseases
My research investigates how protein lipidation regulates neuronal membrane targeting, intracellular trafficking, synaptic function and cellular homeostasis. We focus on lipid modifications, particularly N-myristoylation and S-palmitoylation, which control protein association with cellular membranes, subcellular localisation and signalling. A key focus is the role of DDHD2 in regulating the availability of endogenous saturated fatty acids, including myristate and palmitate, which serve as essential substrates for protein lipidation. We investigate how DDHD2-dependent fatty acid metabolism may link neuronal energy production with protein lipidation, and how disruption of these interconnected pathways contributes to synaptic dysfunction and neurological disease. By combining advanced imaging, quantitative cell biology, and human iPSC and organoid models, we aim to uncover fundamental mechanisms of neuronal lipid regulation and identify new opportunities for therapeutic intervention.
-
Virus–host interactions, neuronal metabolic resilience, and host-directed antiviral strategies in neurological and respiratory infections
My laboratory investigates how viruses exploit host cellular pathways to establish infection and how viral infections may compromise neuronal metabolic resilience, particularly in individuals with underlying metabolic vulnerabilities. We aim to understand how infection-induced cellular stress interacts with neuronal energy metabolism and contributes to neurodegeneration. In parallel, we develop host-directed antiviral strategies targeting cellular lipid-modifying enzymes, including protein lipidation pathways, with the potential to provide broad-spectrum protection against neurological and respiratory viral infections. By integrating virus–host biology, neuronal metabolism and human stem cell-derived models, we seek to identify therapeutic approaches that both limit viral infection and preserve neuronal function and resilience.
Research impacts
My research aims to transform our understanding of neurological disease and translate fundamental discoveries into new therapeutic opportunities.
A major breakthrough from my laboratory has challenged the longstanding view of how the brain is powered. We demonstrated that neurons can mobilise endogenous fatty acids to generate mitochondrial ATP energy, revealing a previously unknown energy pathway that supports synaptic function. This discovery opens new avenues for understanding neurological disorders associated with impaired lipid metabolism and mitochondrial dysfunction. We are now investigating how these findings can be translated into metabolic therapies for rare inherited neurological disorders, including hereditary spastic paraplegias, where emerging evidence suggests that disturbances in neuronal fatty acid metabolism and bioenergetics may represent a convergent disease mechanism across several subtypes.
My team also develops human induced pluripotent stem cell (iPSC) and organoid models to uncover disease mechanisms that are difficult to investigate using conventional experimental systems. These human-relevant platforms enable us to evaluate emerging therapeutic approaches, including gene and metabolic therapies, while advancing alternatives to animal-based preclinical research.
Beyond neurological disease, our research has identified cellular mechanisms exploited by viruses, opening new avenues for host-directed antiviral therapies targeting protein lipidation, with potential broad-spectrum activity against multiple viral pathogens. We are also investigating how viral infections may compromise neuronal metabolic resilience and accelerate neurodegeneration in vulnerable individuals, aiming to identify therapeutic strategies that strengthen neuronal resilience to infection-induced stress and prevent disease progression.
By bridging fundamental cell biology, advanced imaging, human disease modelling and therapeutic development, our research seeks to convert discoveries at the molecular level into meaningful advances in human health.
Works
Search Professor Merja Joensuu’s works on UQ eSpace
Featured
2026
Journal Article
Inhibition of host N-myristoylation compromises the infectivity of SARS-CoV-2 due to Golgi-bypassing egress
Saber, Saber H., Yak, Nyakuoy, Dolski, Konstantin, Mäki, Sanna, Levanov, Lev, Willenbrink, Levina A., Sng, Julian D. J., Shaker, Mohammed R., Morrison, Sean D., Zheng, Huiwen, Pars, Selin, Pietrogrande, Giovanni, Bong, Yih Tyng, Vane-Tempest, Tania, Smura, Teemu, Strandin, Tomas, Ojha, Ravi, Kant, Ravi, Ruuska, Janika, Topi, Francesco, Vaskiv, Diana, Kareinen, Lauri, Binder, Tobias, Lu, Siyuan, Floetenmeyer, Matthias, Al-mhanawi, Bahaa, Zhu, Yanshan, Sironen, Tarja, Talbo, Gert Hoy ... Joensuu, Merja (2026). Inhibition of host N-myristoylation compromises the infectivity of SARS-CoV-2 due to Golgi-bypassing egress. Nature Communications, 17 (1) 7055, 1-25. doi: 10.1038/s41467-026-72938-z
2025
Journal Article
DDHD2 provides a flux of saturated fatty acids for neuronal energy and function
Saber, Saber H., Yak, Nyakuoy, Yong, Xuan Ling Hilary, Bong, Yih Tyng, Leeson, Hannah, Dai, Chuan-Yang, Binder, Tobias, Lu, Siyuan, Purushothaman, Reshinthine, Lenaerts, An-Sofie, Almeida-Souza, Leonardo, Koludarova, Lidiia, Er, Safak, Hlushchuk, Irena, Gaudin, Arnaud, Singh, Sachin, Nyman, Tuula A., Harmer, Jeffrey R., Zuryn, Steven, Wolvetang, Ernst, Talbo, Gert Hoy, Airavaara, Mikko, Battersby, Brendan J., van Waardenberg, Ashley J., Anggono, Victor, Balistreri, Giuseppe and Joensuu, Merja (2025). DDHD2 provides a flux of saturated fatty acids for neuronal energy and function. Nature Metabolism, 7 (10), 2117-2141. doi: 10.1038/s42255-025-01367-x
2024
Journal Article
Dynamin independent endocytosis is an alternative cell entry mechanism for multiple animal viruses
Ojha, Ravi, Jiang, Anmin, Mantylae, Elina, Quirin, Tania, Modhira, Naphak, Witte, Robert, Gaudin, Arnaud, De Zanetti, Lisa, Gormal, Rachel Sarah, Vihinen-Ranta, Maija, Mercer, Jason, Suomalainen, Maarit, Greber, Urs F., Yamauchi, Yohei, Lozach, Pierre-Yves, Helenius, Ari, Vapalahti, Olli, Young, Paul, Watterson, Daniel, Meunier, Frederic A., Joensuu, Merja and Balistreri, Giuseppe (2024). Dynamin independent endocytosis is an alternative cell entry mechanism for multiple animal viruses. PLoS Pathogens, 20 (11) e1012690, e1012690. doi: 10.1371/journal.ppat.1012690
2024
Journal Article
Dynamin1 long- and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters
Jiang, Anmin, Kudo, Kye, Gormal, Rachel S., Ellis, Sevannah, Guo, Sikao, Wallis, Tristan P., Longfield, Shanley F., Robinson, Phillip J., Johnson, Margaret E., Joensuu, Merja and Meunier, Frédéric A. (2024). Dynamin1 long- and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters. Nature Communications, 15 (1) 4060, 1-21. doi: 10.1038/s41467-024-47677-8
2024
Journal Article
The DDHD2-STXBP1 interaction mediates long-term memory via generation of saturated free fatty acids
Akefe, Isaac O, Saber, Saber H., Matthews, Benjamin, Venkatesh, Bharat G., Gormal, Rachel S., Blackmore, Daniel G., Alexander, Suzy, Sieriecki, Emma, Gambin, Yann, Bertran-Gonzalez, Jesus, Vitale, Nicolas, Humeau, Yann, Gaudin, Arnaud, Ellis, Sevannah A., Michaels, Alysee A., Xue, Mingshan, Cravatt, Benjamin, Joensuu, Merja, Wallis, Tristan P. and Meunier, Frédéric A. (2024). The DDHD2-STXBP1 interaction mediates long-term memory via generation of saturated free fatty acids. The EMBO Journal, 43 (4) 4, 533-567. doi: 10.1038/s44318-024-00030-7
Featured
2023
Journal Article
Presynaptic targeting of botulinum neurotoxin type A requires a tripartite PSG‐Syt1 ‐ SV2 plasma membrane nanocluster for synaptic vesicle entry
Joensuu, Merja, Syed, Parnayan, Saber, Saber H., Lanoue, Vanessa, Wallis, Tristan P., Rae, James, Blum, Ailisa, Gormal, Rachel S., Small, Christopher, Sanders, Shanley, Jiang, Anmin, Mahrhold, Stefan, Krez, Nadja, Cousin, Michael A., Cooper‐White, Ruby, Cooper‐White, Justin J., Collins, Brett M., Parton, Robert G., Balistreri, Giuseppe, Rummel, Andreas and Meunier, Frédéric A. (2023). Presynaptic targeting of botulinum neurotoxin type A requires a tripartite PSG‐Syt1 ‐ SV2 plasma membrane nanocluster for synaptic vesicle entry. The EMBO Journal, 42 (13) e112095, e112095. doi: 10.15252/embj.2022112095
Featured
2020
Journal Article
Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity
Cantuti-Castelvetri, Ludovico, Ojha, Ravi, Pedro, Liliana D., Djannatian, Minou, Franz, Jonas, Kuivanen, Suvi, van der Meer, Franziska, Kallio, Katri, Kaya, Tuğberk, Anastasina, Maria, Smura, Teemu, Levanov, Lev, Szirovicza, Leonora, Tobi, Allan, Kallio-Kokko, Hannimari, Österlund, Pamela, Joensuu, Merja, Meunier, Frédéric A., Butcher, Sarah J., Winkler, Martin Sebastian, Mollenhauer, Brit, Helenius, Ari, Gokce, Ozgun, Teesalu, Tambet, Hepojoki, Jussi, Vapalahti, Olli, Stadelmann, Christine, Balistreri, Giuseppe and Simons, Mikael (2020). Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity. Science, 370 (6518) abd2985, 856-860. doi: 10.1126/science.abd2985
2017
Journal Article
Visualizing endocytic recycling and trafficking in live neurons by subdiffractional tracking of internalized molecules
Joensuu, Merja, Martinez-Marmol, Ramon, Padmanabhan, Pranesh, Glass, Nick R., Durisic, Nela, Pelekanos, Matthew, Mollazade, Mahdie, Balistreri, Giuseppe, Amor, Rumelo, Cooper-White, Justin J., Goodhill, Geoffrey J. and Meunier, Frederic A. (2017). Visualizing endocytic recycling and trafficking in live neurons by subdiffractional tracking of internalized molecules. Nature Protocols, 12 (12), 2590-2622. doi: 10.1038/nprot.2017.116
2016
Journal Article
Subdiffractional tracking of internalized molecules reveals heterogeneous motion states of synaptic vesicles
Joensuu, Merja, Padmanabhan, Pranesh, Durisic, Nela, Bademosi, Adekunle T. D., Cooper-Williams, Elizabeth, Morrow, Isabel C., Harper, Callista B., Jung, WooRam, Parton, Robert G., Goodhill, Geoffrey J., Papadopulos, Andreas and Meunier, Frederic A. (2016). Subdiffractional tracking of internalized molecules reveals heterogeneous motion states of synaptic vesicles. Journal of Cell Biology, 215 (2), 277-292. doi: 10.1083/jcb.201604001
2027
Journal Article
Neuronal fatty acid bioenergetics: An emerging pathway and potential point in convergence in hereditary spastic paraplegias
Yak, Nyakuoy and Joensuu, Merja (2027). Neuronal fatty acid bioenergetics: An emerging pathway and potential point in convergence in hereditary spastic paraplegias. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1872 (1) 159775, 159775-159775. doi: 10.1016/j.bbalip.2026.159775
2026
Journal Article
Mitochondria across the globe: diverse voices, shared energy
Castro-Sepúlveda, Mauricio, Hevener, Andrea L., Joensuu, Merja, Qiu, Jian, Ryan, Dylan G. and Yardeni, Tal (2026). Mitochondria across the globe: diverse voices, shared energy. Trends in Endocrinology and Metabolism, 37 (6), 483-486. doi: 10.1016/j.tem.2026.04.006
2026
Journal Article
A versatile nanobody platform for live and super-resolution imaging of synaptic vesicle dynamics and plasticity in rodent and human neurons
Goel, Rashi, Jevdokimenko, Kristina, Rehm, Ronja, Hentze, Jannik, Agui-Gonzalez, Paola, Ninov, Momchil, Maier, Erik, Wu, Yin, Lange, Felix, Witkowska, Agata, Bolz, Svenja, Pennacchietti, Francesca, Damenti, Martina, Kaempf, Natalie, Khayenko, Vladimir, Calatayud, Carles, Malviya, Viveka Nand, Chanaday, Natali L., Hutchinson, Emma Scaletti, Liu, Hao, Weyand, Kirsten, Schwarze, Valentin, Ivanova, Daniela, Wallis, Tristan P., Small, Christopher, Maric, Hans M., Joensuu, Merja, Cousin, Michael A., Meunier, Frederic A. ... Fornasiero, Eugenio F. (2026). A versatile nanobody platform for live and super-resolution imaging of synaptic vesicle dynamics and plasticity in rodent and human neurons. Journal of Nanobiotechnology, 24 (1) 443. doi: 10.1186/s12951-026-04489-w
2025
Journal Article
SARS-CoV-2 infection in hiPSC-derived neurons is cathepsin-dependent and causes differential accumulation of HIF1ɑ and phosphorylated tau
Pinja, Kettunen, Janika, Ruuska, Tania, Quirin, Ravi, Ojha, Saber, Saber H., Sng, Julian D.J., Morrison, Sean, Al-Mhanawi, Bahaa, Shaker, Mohammed R., De Neck, Simon, Kipar, Anja, Paavolainen, Lassi, Wolvetang, Ernst, Joensuu, Merja, Jari, Koistinaho, Giuseppe, Balistreri and Taisia, Rolova (2025). SARS-CoV-2 infection in hiPSC-derived neurons is cathepsin-dependent and causes differential accumulation of HIF1ɑ and phosphorylated tau. Molecular Therapy Nucleic Acids, 36 (4) 102726, 1-20. doi: 10.1016/j.omtn.2025.102726
2025
Other Outputs
Raw files for Fig 1-8 for Saber et al., "DDHD2 provides a flux of saturated fatty acids for neuronal energy and function" Nature Metabolism publication
Joensuu, Merja (2025). Raw files for Fig 1-8 for Saber et al., "DDHD2 provides a flux of saturated fatty acids for neuronal energy and function" Nature Metabolism publication. The University of Queensland. (Dataset) doi: 10.48610/0908106
2024
Journal Article
SV2A controls the surface nanoclustering and endocytic recruitment of Syt1 during synaptic vesicle recycling
Small, Christopher, Harper, Callista, Jiang, Anmin, Kontaxi, Christiana, Pronot, Marie, Yak, Nyakuoy, Malapaka, Anusha, Davenport, Elizabeth C., Wallis, Tristan P., Gormal, Rachel S., Joensuu, Merja, Martínez‐Mármol, Ramón, Cousin, Michael A. and Meunier, Frédéric A. (2024). SV2A controls the surface nanoclustering and endocytic recruitment of Syt1 during synaptic vesicle recycling. Journal of Neurochemistry, 168 (9), 3188-3208. doi: 10.1111/jnc.16186
2024
Journal Article
Synapsin 2a tetramerisation selectively controls the presynaptic nanoscale organisation of reserve synaptic vesicles
Longfield, Shanley F., Gormal, Rachel S., Feller, Matis, Parutto, Pierre, Reingruber, Jürgen, Wallis, Tristan P., Joensuu, Merja, Augustine, George J., Martínez-Mármol, Ramón, Holcman, David and Meunier, Frédéric A. (2024). Synapsin 2a tetramerisation selectively controls the presynaptic nanoscale organisation of reserve synaptic vesicles. Nature Communications, 15 (1) 2217, 1-18. doi: 10.1038/s41467-024-46256-1
2023
Other Outputs
Quantified behavioural and lipidomic data in response to memory acquisition in mice
Meunier, F A, Akefe, I O, Saber, S H, Matthews, B, Venkatesh, B V, Gormal, R S, Blackmore, D G, Alexander, S, Sieriecki, E, Gambin, Y, Bertran-Gonzalez, J, Vitale, N, Humeau, Y, Gaudin, A, Ellis, S A, Michaels, A A, Xue, M, Cravatt, B, Joensuu, M and Wallis, T P (2023). Quantified behavioural and lipidomic data in response to memory acquisition in mice. The University of Queensland. (Dataset) doi: 10.48610/4a44503
2023
Conference Publication
Dissection of alpha‐synuclein specific synaptic functions by gene editing
Madhivanan, Kayalvizhi, Parra‐Rivas, Leonardo A., Joensuu, Merja, Sanders, Shanley, Caballero‐Florán, René, Bingham, Dominic, Sharma, Rohan, Jenkins, Paul M., Leterrier, Christophe, Meunier, Frederic A. and Roy, Subhojit (2023). Dissection of alpha‐synuclein specific synaptic functions by gene editing. Alzheimer’s Association International Conference AAIC 2023, Amsterdam, Netherlands, 16-20 July 2023. Hoboken, NJ United States: John Wiley & Sons. doi: 10.1002/alz.082510
2023
Journal Article
Tau forms synaptic nano-biomolecular condensates controlling the dynamic clustering of recycling synaptic vesicles
Longfield, Shanley F., Mollazade, Mahdie, Wallis, Tristan P., Gormal, Rachel S., Joensuu, Merja, Wark, Jesse R., van Waardenberg, Ashley J., Small, Christopher, Graham, Mark E., Meunier, Frédéric A. and Martínez-Mármol, Ramón (2023). Tau forms synaptic nano-biomolecular condensates controlling the dynamic clustering of recycling synaptic vesicles. Nature Communications, 14 (1) 7277, 1-20. doi: 10.1038/s41467-023-43130-4
2023
Conference Publication
Tau - A master regulator of recycling synaptic vesicle clustering at the presynapse
Sanders, Shanley F., Mollazade, Mahdie, Wallis, Tristan P., Gormal, Rachel S., Joensuu, Merja, Wark, Jesse R., Waardenberg, Ashley J., Small, Christopher, Graham, Mark E., Martinez-Marmol, Ramon and Meunier, Frederic A. (2023). Tau - A master regulator of recycling synaptic vesicle clustering at the presynapse. ISN-ESN 2023 Meeting, Porto, Portugal, 8 - 11 August 2023. Chichester, West Sussex, United Kingdom: Wiley-Blackwell Publishing. doi: 10.1111/jnc.15897
Funding
Current funding
Past funding
Supervision
Availability
- Dr Merja Joensuu is:
- Available for supervision
Looking for a supervisor? Read our advice on how to choose a supervisor.
Supervision history
Current supervision
-
Doctor Philosophy
Lipid metabolism regulates neuronal energy homeostasis, protein N-myristoylation and membrane trafficking
Principal Advisor
Other advisors: Dr Hannah Leeson
-
Doctor Philosophy
Consciousness and Unconsciousness in Brain Organoids
Associate Advisor
Other advisors: Honorary Professor Andre Van Zundert, Dr Selin Pars, Professor Bruno van Swinderen
-
Doctor Philosophy
Mechanisms of RGD-Functionalized Nanomaterials in Tumor Cell Biology
Associate Advisor
Other advisors: Dr Wenyi Gu, Professor Michael Monteiro
-
Doctor Philosophy
Identifying the mechanism of regeneration in early brain development
Associate Advisor
Other advisors: Dr Selin Pars, Dr Giovanni Pietrogrande
Completed supervision
-
2024
Doctor Philosophy
Bidirectional modulation of cellular saturated fatty acids as potential therapeutics for neurological conditions and viral infections
Principal Advisor
-
2022
Doctor Philosophy
Identifying Key Changes in Brain Free Fatty Acids Associated with Memory in Health, Ageing and Disease: A Mechanistic Study
Associate Advisor
Other advisors: Dr Tristan Wallis, Professor Frederic Meunier
-
2022
Doctor Philosophy
Characterization and role of lateral trapping and nanocluster organization of the endocytic machinery
Associate Advisor
Other advisors: Professor Frederic Meunier
Media
Enquiries
Contact Dr Merja Joensuu directly for media enquiries about:
- Neuronal energy metabolism
Need help?
For help with finding experts, story ideas and media enquiries, contact our Media team: