
Overview
Background
Dr Botella's research interests are in genetic engineering, molecular biology and signal transduction in plants.
Dr. Jimmy Botella is Professor of Plant Biotechnology at the University of Queensland. He obtained a degree in Quantum Chemistry from the University of Madrid (Spain) and a PhD in Biochemistry from the University of Malaga (Spain). After postdoctoral positions at Michigan State University and Pennsylvania State University he joined the University of Queensland in 1995. At UQ he founded the Plant Genetic Engineering Laboratory (PGEL) specialising in the fields of tropical and subtropical agricultural biotechnology for almost 15 years. J. Botella has eleven international patents in the field of Plant Biotechnology and is a founding member of two biotechnology companies (Coridon Ltd. and Origo Biotech).
Dr Botella is a member of the Plant Molecular Biology and Biotechnology research group.
Some highlights of the Plant Genetic Engineering Laboratory’s research:
- Production and field trial of the world’s first genetically modified pineapples with genetic constructs to control flowering time. These pineapples will allow farmer control over harvesting times.
- Development of a new technology to confer protection against nematode infestation.
- Discovery of a gene that can confer resistance to the devastating fungus Fusarium oxysporum in plants.
- Development of a new technology to confer protection against pathogenic fungi in plants.
Research interests
Dr. Botella’s research has two major foci: basic cell biology and applied biotechnology. In cell biology he is interested in studying the function of the Heterotrimeric G proteins in plants. This family of proteins is extremely important in humans but their role in pant systems is still largely unknown. Dr. Botella’s research has strongly contributed to the current body of knowledge available in plants with critical contributions such as the discovery and characterization of the first plant gamma subunits and the establishment of these subunits as the critical element conferring function specificity to all plant G proteins. Dr. Botella’s team has also discovered the important role that these proteins play in defense against pathogens. New and unpublished data has now revealed that G proteins are important yield enhancing factors in crops such as rice. Another research interest resides in the communication between plants and insects. There is plenty of knowledge of how important smell, volatiles emitted by the plant, is for foraging insects in order to determine their host preferences. Nevertheless, most of the available studies have been performed using synthetic chemicals in artificial experimental settings. Dr. Botella’s team and collaborators have genetically engineered plants to produce different volatile mixes in the flowers in order to perform in vivo behavioral studies in insects.
Biotechnology research at the Plant Genetic Engineering Laboratory mostly arises from discoveries made in basic research. The PGEL focuses in tropical and subtropical crops. These crops have attracted little attention in terms of biotechnology but are essential sources of food and energy for a large part of the world’s population, especially in Asia and the Indian subcontinent. The PGEL has developed a number of platform technologies that can be applied to multiple crops in order to confer resistance to pathogens, modify plant architecture and control flowering time.
Current research projects include:
- Plant heterotrimeric G proteins: New roles in defence, stomatal control and ABA perception.
- Putting smells into context: using in vivo technologies to understand plant-insect odour communication.
- Use of host-derived RNA interference technology to control plant pathogens (especially pathogenic fungi and nematodes).
- Control of Fusarium wilt disease.
- Genetic improvement of grain crops.
- Genetic engineering research projects
Availability
- Professor Jimmy Botella is:
- Available for supervision
- Media expert
Fields of research
Qualifications
- Bachelor of Quantum Chemistry, Universidad Autónoma de Madrid
- Masters (Coursework) of Science, Universidad Autónoma de Madrid
- Doctor of Philosophy of Biochemistry, Department of Biochemistry
Works
Search Professor Jimmy Botella’s works on UQ eSpace
2019
Journal Article
Perspectives on the Application of Genome-Editing Technologies in Crop Breeding
Hua, Kai, Zhang, Jinshan, Botella, Jose Ramon, Ma, Changle, Kong, Fanjiang, Liu, Baohui and Zhu, Jian-Kang (2019). Perspectives on the Application of Genome-Editing Technologies in Crop Breeding. Molecular Plant, 12 (8), 1047-1059. doi: 10.1016/j.molp.2019.06.009
2019
Journal Article
Beyond light: insights into the role of constitutively photomorphogenic1 in plant hormonal signaling
Wang, Wenjing, Chen, Qingbin, Botella, Jose Ramon and Guo, Siyi (2019). Beyond light: insights into the role of constitutively photomorphogenic1 in plant hormonal signaling. Frontiers in Plant Science, 10 557, 557. doi: 10.3389/fpls.2019.00557
2019
Journal Article
Gene editing in plants: Progress and challenges
Mao, Yanfei, Botella, Jose Ramon, Liu, Yaoguang and Zhu, Jian-Kang (2019). Gene editing in plants: Progress and challenges. National Science Review, 6 (3), 421-437. doi: 10.1093/nsr/nwz005
2019
Journal Article
Biosynthesis of DHGA12 and its roles in Arabidopsis seedling establishment
Liu, Hao, Guo, Siyi, Lu, Minghua, Zhang, Yu, Li, Junhua, Wang, Wei, Wang, Pengtao, Zhang, Junli, Hu, Zhubing, Li, Liangliang, Si, Lingyu, Zhang, Jie, Qi, Qi, Jiang, Xiangning, Botella, José Ramón, Wang, Hua and Song, Chun-Peng (2019). Biosynthesis of DHGA12 and its roles in Arabidopsis seedling establishment. Nature Communications, 10 (1) 1768, 1768. doi: 10.1038/s41467-019-09467-5
2019
Journal Article
Now for the hard ones: is there a limit on CRISPR genome editing in crops?
Botella, Jose R. (2019). Now for the hard ones: is there a limit on CRISPR genome editing in crops?. Journal of Experimental Botany, 70 (3), 734-737. doi: 10.1093/jxb/erz007
2018
Journal Article
A highly efficient cell division-specific CRISPR/Cas9 system generates homozygous mutants for multiple genes in Arabidopsis
Feng, Zhengyan, Zhang, Zhengjing, Hua, Kai, Gao, Xifeng, Mao, Yanfei, Botella, Jose Ramon and Zhu, Jian-Kang (2018). A highly efficient cell division-specific CRISPR/Cas9 system generates homozygous mutants for multiple genes in Arabidopsis. International Journal of Molecular Sciences, 19 (12) 3925, 3925. doi: 10.3390/ijms19123925
2018
Journal Article
Optimization of CRISPR/Cas9 genome editing in cotton by improved sgRNA expression
Long, Lu, Guo, Dan-Dan, Gao, Wei, Yang, Wen-Wen, Hou, Li-Pan, Ma, Xiao-Nan, Miao, Yu-Chen, Botella, Jose Ramon and Song, Chun-Peng (2018). Optimization of CRISPR/Cas9 genome editing in cotton by improved sgRNA expression. Plant Methods, 14 (1) 85, 85. doi: 10.1186/s13007-018-0353-0
2018
Journal Article
Manipulating plant RNA-silencing pathways to improve the gene editing efficiency of CRISPR/Cas9 system
Mao, Yanfei, Yang, Xiaoxuan, Zhou, Yiting, Zhang, Zhengjing, Botella, Jose Ramon and Zhu, Jian-Kang (2018). Manipulating plant RNA-silencing pathways to improve the gene editing efficiency of CRISPR/Cas9 system. Genome Biology, 19 (1) 149, 149. doi: 10.1186/s13059-018-1529-7
2018
Journal Article
A transient transformation system for gene characterization in upland cotton (Gossypium hirsutum)
Li, Haipeng, Li, Kun, Guo, Yutao, Guo, Jinggong, Miao, Kaiting, Botella, Jose R., Song, Chun-Peng and Miao, Yuchen (2018). A transient transformation system for gene characterization in upland cotton (Gossypium hirsutum). Plant Methods, 14 (1) 50, 50. doi: 10.1186/s13007-018-0319-2
2018
Journal Article
A simple and cost-effective method for screening of CRISPR/Cas9-induced homozygous/biallelic mutants
Guo, Jinggong, Li, Kun, Jin, Lifeng, Xu, Rui, Miao, Kaiting, Yang, Fengbo, Qi, Chaoya, Zhang, Lin, Botella, Jose R., Wang, Ran and Miao, Yuchen (2018). A simple and cost-effective method for screening of CRISPR/Cas9-induced homozygous/biallelic mutants. Plant Methods, 14 (1) 40, 40. doi: 10.1186/s13007-018-0305-8
2018
Journal Article
Correction: Nucleic acid purification from plants, animals and microbes in under 30 seconds (PLoS biology (2017) 15 11 (e2003916))
Zou, Yiping, Mason, Michael Glenn, Wang, Yuling, Wee, Eugene, Turni, Conny, Blackall, Patrick J., Trau, Matt and Botella, Jose Ramon (2018). Correction: Nucleic acid purification from plants, animals and microbes in under 30 seconds (PLoS biology (2017) 15 11 (e2003916)). PLoS Biology, 16 (5). doi: 10.1371/journal.pbio.1002630
2018
Journal Article
Generation of new glutinous rice by CRISPR/Cas9-targeted mutagenesis of the Waxy gene in elite rice varieties
Zhang, Jinshan, Zhang, Hui, Botella, José Ramón and Zhu, Jian-Kang (2018). Generation of new glutinous rice by CRISPR/Cas9-targeted mutagenesis of the Waxy gene in elite rice varieties. Journal of Integrative Plant Biology, 60 (5), 369-375. doi: 10.1111/jipb.12620
2018
Journal Article
Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress
Gao, Wei, Xu, Fu-Chun, Guo, Dan-Dan, Zhao, Jing-Ruo, Liu, Ji, Guo, Ya-Wei, Singh, Prashant Kumar, Ma, Xiao-Nan, Long, Lu, Botella, Jose Ramon and Song, Chun-Peng (2018). Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress. BMC Plant Biology, 18 (1) 15, 1-15. doi: 10.1186/s12870-018-1230-8
2017
Journal Article
Genome Editing—Principles and Applications for Functional Genomics Research and Crop Improvement
Zhang, Hui, Zhang, Jinshan, Lang, Zhaobo, Botella, José Ramón and Zhu, Jian-Kang (2017). Genome Editing—Principles and Applications for Functional Genomics Research and Crop Improvement. Critical Reviews in Plant Sciences, 36 (4), 291-309. doi: 10.1080/07352689.2017.1402989
2017
Journal Article
Advanced DNA-Based Point-of-Care Diagnostic Methods for Plant Diseases Detection
Lau, Han Yih and Botella, Jose R. (2017). Advanced DNA-Based Point-of-Care Diagnostic Methods for Plant Diseases Detection. Frontiers in Plant Science, 8 2016, 2016. doi: 10.3389/fpls.2017.02016
2017
Journal Article
Nucleic acid purification from plants, animals and microbes in under 30 seconds
Zou, Yiping, Mason, Michael Glenn, Wang, Yuling, Wee, Eugene, Turni, Conny, Blackall, Patrick J., Trau, Matt and Botella, Jose Ramon (2017). Nucleic acid purification from plants, animals and microbes in under 30 seconds. PLoS Biology, 15 (11) e2003916, e2003916. doi: 10.1371/journal.pbio.2003916
2017
Journal Article
VERNALIZATION1 modulates root system architecture in wheat and barley
Voss-Fels, Kai P., Robinson, Hannah, Mudge, Stephen R., Richard, Cecile, Newman, Saul, Wittkop, Benjamin, Stahl, Andreas, Friedt, Wolfgang, Frisch, Matthias, Gabur, Iulian, Miller-Cooper, Anika, Campbell, Bradley C., Kelly, Alison, Fox, Glen, Christopher, Jack, Christopher, Mandy, Chenu, Karine, Franckowiak, Jerome, Mace, Emma S., Borrell, Andrew K., Eagles, Howard, Jordan, David R., Botella, Jose R., Hammer, Graeme, Godwin, Ian D., Trevaskis, Ben, Snowdon, Rod J. and Hickey, Lee T. (2017). VERNALIZATION1 modulates root system architecture in wheat and barley. Molecular Plant, 11 (1), 226-229. doi: 10.1016/j.molp.2017.10.005
2017
Journal Article
Host Delivered RNAi, an efficient approach to increase rice resistance to sheath blight pathogen (Rhizoctonia solani)
Tiwari, Ila Mukul, Jesuraj, Arun, Kamboj, Richa, Devanna, B. N., Botella, Jose R. and Sharma, T. R. (2017). Host Delivered RNAi, an efficient approach to increase rice resistance to sheath blight pathogen (Rhizoctonia solani). Scientific Reports, 7 (1) 7521, 7521. doi: 10.1038/s41598-017-07749-w
2017
Journal Article
Genome editing in cotton with the CRISPR/Cas9 system
Gao, Wei, Long, Lu, Tian, Xinquan, Xu, Fuchun, Liu, Ji, Singh, Prashant K., Botella, Jose R. and Song, Chunpeng (2017). Genome editing in cotton with the CRISPR/Cas9 system. Frontiers in Plant Science, 8 1364, 1364. doi: 10.3389/fpls.2017.01364
2017
Journal Article
Whole-genome analysis of candidate genes associated with seed size and weight in Sorghum bicolor reveals signatures of artificial selection and insights into parallel domestication in cereal crops
Tao, Yongfu, Mace, Emma S., Tai, Shuaishuai, Cruickshank, Alan, Campbell, Bradley C., Zhao, Xianrong, Van Oosterom, Erik J., Godwin, Ian D., Botella, Jose R. and Jordan, David R. (2017). Whole-genome analysis of candidate genes associated with seed size and weight in Sorghum bicolor reveals signatures of artificial selection and insights into parallel domestication in cereal crops. Frontiers in Plant Science, 8 1237, 1237.1-1237.14. doi: 10.3389/fp/s.2017.01237
Funding
Current funding
Past funding
Supervision
Availability
- Professor Jimmy Botella is:
- Available for supervision
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Available projects
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Development of new genome editing technologies for crop improvement
The advent of clustered regularly interspaced short palindromic repeat (CRISPR) has had a profound impact on plant biology, and crop improvement. Nevertheless, CRISPR technology is still in its infancy and a number of important problems need to be solved before it can be widely used in multiple crops. Projects are available to explore new CRISPR systems and develop more efficient approaches to improve genome editing applications in crops.
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Molecular mechanisms of crop disease resistance
Heterotrimeric G-proteins (G-proteins) play a vital role in the defence against many important crop pathogens. Our group has been a pioneer in establishing the importance of these proteins in plant immunity and has recently produced a series of CRISPR mutants to further analyse the molecular mechanisms controlling disease resistance in crops. Projects are available to study the defence response in a number of transgenic CRISPR tomato lines.
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Development of point-of-care diagnostics for agriculture
Early detection of pests and pathogens is of paramount importance in reducing agricultural losses. One approach to early detection is point-of-care (POC) diagnostics, which can provide early warning and therefore allow fast deployment of preventive measures to slow down the establishment of crop diseases. Among the available diagnostic technologies, nucleic acid amplification–based diagnostics provide the highest sensitivity and specificity, and those technologies that forego the requirement for thermocycling show the most potential for use at POC.
Projects are available in the design and evelopment of POC diagnostic applications for multiple diseases in crops.
Supervision history
Current supervision
-
Doctor Philosophy
Biotechnological improvement of Vanilla planifolia
Principal Advisor
Other advisors: Professor Robert Henry
-
Doctor Philosophy
Biotechnological improvement of Vanilla planifolia
Principal Advisor
Other advisors: Professor Robert Henry
-
Doctor Philosophy
Development of Transgene-free Genome Editing Technologies for the Improvement of Dicot Crops
Associate Advisor
Other advisors: Dr Peter Crisp
-
Doctor Philosophy
Towards pathogen free coconut (Cocos nucifera L.) germplasm and identifying varietal resistant markers to Bogia coconut disease: A focus on Papua New Guinea genotypes.
Associate Advisor
Other advisors: Professor Steve Adkins, Dr Sundar Kalaipandian
-
Doctor Philosophy
Genome editing tools for monocot crop improvement
Associate Advisor
Other advisors: Dr Peter Crisp
-
Doctor Philosophy
Development of on farm diagnostics via nanopore for the pig industry.
Associate Advisor
Other advisors: Dr Noman Naseem, Dr Lida Omaleki, Dr Conny Turni
-
Doctor Philosophy
Characterizing the role of the heterotrimeric G protein alpha subunit in plant defence
Associate Advisor
Other advisors: Dr Yuri Trusov
-
Doctor Philosophy
Development of efficient genome editing technologies for crop improvement
Associate Advisor
Other advisors: Dr Karen Massel
-
Doctor Philosophy
Development of efficient genome editing technologies for crop improvement
Associate Advisor
Other advisors: Dr Karen Massel
-
Doctor Philosophy
Control of flowering in pineapple by genome editing.
Associate Advisor
Other advisors: Dr Guoquan Liu, Dr Yuri Trusov
Completed supervision
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2025
Doctor Philosophy
Biotechnological improvement of Vanilla planifolia
Principal Advisor
Other advisors: Professor Robert Henry
-
2021
Master Philosophy
Roles of Extra-Large G-protein XLG2 domains in Arabidopsis thaliana
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2021
Doctor Philosophy
Investigating the mechanism of G-proteins mediated defence in plants
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2021
Doctor Philosophy
Functional Characterization of Heterotrimeric G Protein Alpha and Beta Subunits in Tomato
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2020
Doctor Philosophy
Development of diagnostic technologies for point-of-need applications
Principal Advisor
-
2019
Doctor Philosophy
FUNCTION OF ARABIDOPSIS CALMODULIN BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE IN DEFENSE AND PROGRAMMED CELL DEATH
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2019
Doctor Philosophy
Identification of a novel activation mechanism of plant heterotrimeric G proteins
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2016
Doctor Philosophy
Development of point-of-care and multiplex diagnostic methods for the detection of plant pathogens
Principal Advisor
Other advisors: Professor Matt Trau
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2015
Doctor Philosophy
Characterization of Heterotrimeric G protein Gamma Subunits in Solanum lycopersicum cv MicroTom: Establishing the Functional Roles of a Novel Type B Gamma Subunit.
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2014
Master Philosophy
Studying the Role of Heterotrimeric G proteins in Defense Against Biotrophic and Hemibiotrophic Pathogens
Principal Advisor
Other advisors: Dr Yuri Trusov
-
2012
Doctor Philosophy
Molecular Analysis of Genes Involved in Pineapple Fruit Development
Principal Advisor
-
2012
Doctor Philosophy
Establishing the Role of Gamma Subunits in Heterotrimeric G-Protein Signaling Specificity
Principal Advisor
-
2011
Doctor Philosophy
Exploring Heterotrimeric G Protein Diversity in Plants: Identification of a Novel Third ¿ Subunit and Other Aspects of Gß¿ Signalling in Arabidopsis
Principal Advisor
-
2010
Doctor Philosophy
Plants, pests and pollinators: combining technologies to crack the odour code
Principal Advisor
Other advisors: Emeritus Professor Myron Zalucki
-
2009
Doctor Philosophy
Cellular roles for Developmentally Regulated G-proteins in plants: Heat stress and protein renaturation
Principal Advisor
Other advisors: Professor Bostjan Kobe
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2007
Doctor Philosophy
FINDING CLUES TO THE FUNCTION OF THE UNKNOWN ARABIDOPSIS GENE AT2G47270.
Principal Advisor
-
2006
Doctor Philosophy
CHARACTERISATION OF THE Arabidopsis BROOMHEAD PHENOTYPE
Principal Advisor
-
2003
Doctor Philosophy
FUNCTIONAL CHARACTERISATION OF atdrgl
Principal Advisor
-
2002
Doctor Philosophy
PROMOTER ANALYSIS OF AIM-1 - A TOUCH INDUCIBLE GENE
Principal Advisor
-
2002
Doctor Philosophy
THE ROLE OF GLUTAMATE DEHYDROGENASE IN HIGHER PLANTS
Principal Advisor
-
2002
Doctor Philosophy
DETAILED MOLECULAR CHARACTERISATION OF A NOVEL GTP-BINDING PROTEIN
Principal Advisor
-
2002
Doctor Philosophy
MOLECULAR CHARACTERISATION OF FACTORS INTERACTING WITH G-PROTEINS
Principal Advisor
-
2002
Doctor Philosophy
HETEROTRIMERIC G PROTIEN IN PLANT SIGNAL TRANSDUCTION: CHARACTERISATION OF A TOBACCO BETA SUB UNIT
Principal Advisor
-
2019
Doctor Philosophy
Optimising molecular tools to study nitrogen utilisation for grain protein storage in Sorghum bicolor
Associate Advisor
Other advisors: Professor Emma Mace, Professor Ian Godwin
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2003
Doctor Philosophy
THE INFLUENCE OF LIGHT ON NITROGEN METABOLISM
Associate Advisor
Other advisors: Professor Susanne Schmidt
Media
Enquiries
Contact Professor Jimmy Botella directly for media enquiries about:
- Agricultural biotechnology
- Biology - plants
- Biotechnology - plants
- Botany
- Genetic engineering - plants
- Genetic modification
- Genetics
- Genome editing
- GM foods
- Molecular biology - plant
- Plant biotechnology
- Plant genetic engineering
- Plant molecular biology
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