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Professor Allison Pettit
Professor

Allison Pettit

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Overview

Background

Professor Pettit leads the Bones and Immunology Research Group at Mater Research Institute-UQ and is Director of Biomedical Research for Mater Research. Professor Pettit has led multidisciplinary research discovering intersecting biological mechanisms across the fields of immunology, rheumatology, cancer biology, haematology and bone biology. Professor Pettit is currently a UQ Amplify recipient associated with an ARC Future Fellowship, 2017-2020 and CIA on an NHMRC Ideas Grant, 2022-25. Major contributions led by Professor Pettit include the paradigm shifting discovery of a novel population of resident macrophages, osteal macrophages (osteomacs), and their role in promoting bone formation and bone regeneration after injury. Her team have published over 17 manuscripts based on this original discovery (with over 1700 citations) including translation of this basic research discovery toward eluciating novel disease mechanism from cancer bone metastasis to osteoporosis. This also led to the novel discovery of bone marrow resident macrophage contributions to supporting blood stem cells niches and the key role that these cells play in protecting this vital niche from cancer therapies. Bone marrow and specifically haematopoietic stem cell damage is one of the most serious and life-threatening side effects of cancer therapies. Here discoveries are cited in over 117 patent documents and she is currently collaborating with a major pharmaceutical partner.

Professor Pettit's leadership and achievements have been recognised through multiple awards including the 2019 UQ Faculty of Medicine Leader of the Year (Academic), Women in Technology 2018 Life Sciences Outstanding Achievement Award and becoming a Fellow of the American Society of Bone and Mineral Research. Professor Pettit has been invited to give numerous presentations at national and international conferences including Seoul Symposium on Bone Health, Asia-Pacific League of Associations for Rheumatology Congress and a prestigious American Society of Bone and Mineral Research Meet-the-Professor session. Professor Pettit is and Associate Editor for the Journal of Bone and Mineral Research, is an past Council member for the Australian and New Zealand Bone and Mineral Society, and chairs or serves on numerous committees including the Association of Australian Medical Research Institutes Gender Equity, Diversity and Inclusion Committee. PhD candidates under Professor Pettit's supervision have all been supported by scholarships (including 2 x NHMRC), received numerous local and national awards (e.g. Dr Alexander, ASMR QLD Premier Postgraduate Award, 2011 and Dr Lena Batoon won the UQ Faculty of Medicine Graduate of the Year Award, 2021), all had high quality first author publications at completion and 2 received UQ Dean’s Commendations.

Availability

Professor Allison Pettit is:
Available for supervision
Media expert

Qualifications

  • Bachelor (Honours) of Science (Advanced), Griffith University
  • Doctor of Philosophy, The University of Queensland

Research impacts

  • Discovery that the transcription factor RelB is a critical molecular mediator of dendritic cell antigen presentation and extended this to show that RelB expressing dendritic cells have critical roles in the initiation and perpetuation of joint inflammation in inflammatory arthritis. These discoveries were used by my principal HDR supervisor (Professor Ranjeny Thomas; https://researchers.uq.edu.au/researcher/396) as the knowledge platform to develop the first vaccine therapy for rheumatoid arthritis.
  • Demonstration that RANKL is the essential and rate limiting cytokine required for osteoclast formation and focal bone erosion in inflammatory arthritis. This research output influenced pharmaceutical industry development of the blockbuster drug Denosumab.
  • Leadership of the paradigm shifting discovery of a novel population of resident macrophages, osteal macrophages (osteomacs), and their novel role in promoting osteoblastic bone formation and bone regeneration after injury. This has completely changed how the bone and mineral/orthopaedic research field views macrophage contributions to bone health and disease and has influence parallel fields including tissue regeneration and biomaterials.
  • Discovery that macrophages regulate haematopoietic stem cell (HSC) niche homeostasis. The landmark paper on which I am co-first author is a Web of Science highly cited paper (top 1% or research outputs) that has been cited by papers spanning 46 research fields. We have since extended this discovery to demonstrate that resident macrophage resilience to lethal radiation is essential for bone marrow recovery and successful HSC engraftment and haematopoietic reconstitution post-HSC transplantation (senior author manuscript in Blood, 2018).
  • Exposed that resident tissue macropahges are fragmented during tissue single cell suspension generation, leaving behind encapsulated remnants of themselves that have detectable cell membrane proteins, intracellur proteins and reporter molecules and RNAs. This undermindes the accuracy of burgeoning high parameter technologies focussed on single cell analysis (e.g. flow cytometry, single cell RNAseq, CITESeq, etc) as depending on the tissue disaggregation and analysis strategy, macrophages are under-represented relative to their abundance in tissues and/or macrophage-expressed genes are mistakenly attributed to non-macrophage cells and vice versa

Works

Search Professor Allison Pettit’s works on UQ eSpace

150 works between 1996 and 2025

41 - 60 of 150 works

2017

Journal Article

Early anti-inflammatory intervention ameliorates axial disease in the proteoglycan-induced spondylitis mouse model of ankylosing spondylitis

Tseng, Hsu-Wen, Glant, Tibor T., Brown, Matthew A., Kenna, Tony J., Thomas, Gethin P. and Pettit, Allison R. (2017). Early anti-inflammatory intervention ameliorates axial disease in the proteoglycan-induced spondylitis mouse model of ankylosing spondylitis. BMC Musculoskeletal Disorders, 18 (1) 228, 228. doi: 10.1186/s12891-017-1600-7

Early anti-inflammatory intervention ameliorates axial disease in the proteoglycan-induced spondylitis mouse model of ankylosing spondylitis

2017

Journal Article

Continuous blockade of CXCR4 results in dramatic mobilization and expansion of hematopoietic stem and progenitor cells

Karpova, Darja, Ritchey, Julie K., Holt, Matthew S., Abou-Ezzi, Grazia, Monlish, Darlene, Batoon, Lena, Millard, Susan, Spohn, Gabriele, Wiercinska, Eliza, Chendamarai, Ezhil, Yang, Wei, Christ, Stephanie, Gehrs, Leah, Schuettpelz, Laura G., Dembowsky, Klaus, Pettit, Allison R., Rettig, Michael P., Bonig, Halvard and DiPersio, John F. (2017). Continuous blockade of CXCR4 results in dramatic mobilization and expansion of hematopoietic stem and progenitor cells. Blood, 129 (21), 2939-2949. doi: 10.1182/blood-2016-10-746909

Continuous blockade of CXCR4 results in dramatic mobilization and expansion of hematopoietic stem and progenitor cells

2016

Conference Publication

Therapeutic blockade of macrophage colony stimulating factor (CSF-1) delays leukaemia progression of AMLin mice in vivo

Goh, Sal Lee, Levesque, Jean-Pierre, Pettit, Allison, Barbier, Valerie, Jeanclos, Cecile and Winkler, Ingrid (2016). Therapeutic blockade of macrophage colony stimulating factor (CSF-1) delays leukaemia progression of AMLin mice in vivo. 45th Annual Scientific Meeting of the International Society for Experimental Hematology (ISEH), San Diego, CA, United States, 25-28 August 2016. Philadelphia, PA, United States: Elsevier.

Therapeutic blockade of macrophage colony stimulating factor (CSF-1) delays leukaemia progression of AMLin mice in vivo

2016

Journal Article

Resting and injury-induced inflamed periosteum contain multiple macrophage subsets that are located at sites of bone growth and regeneration

Alexander, Kylie Anne, Raggatt, Liza-Jane, Millard, Susan, Batoon, Lena, Wu, Andy Chiu-Ku, Chang, Ming-Kang, Hume, David Arthur and Pettit, Allison Robyn (2016). Resting and injury-induced inflamed periosteum contain multiple macrophage subsets that are located at sites of bone growth and regeneration. Immunology and Cell Biology, 95 (1), 7-16. doi: 10.1038/icb.2016.74

Resting and injury-induced inflamed periosteum contain multiple macrophage subsets that are located at sites of bone growth and regeneration

2016

Journal Article

Role of bone marrow macrophages in controlling homeostasis and repair in bone and bone marrow niches

Kaur, Simranpreet, Raggatt, Liza Jane, Batoon, Lena, Hume, David Arthur, Levesque, Jean-Pierre and Pettit, Allison Robyn (2016). Role of bone marrow macrophages in controlling homeostasis and repair in bone and bone marrow niches. Seminars in Cell and Developmental Biology, 61, 12-21. doi: 10.1016/j.semcdb.2016.08.009

Role of bone marrow macrophages in controlling homeostasis and repair in bone and bone marrow niches

2016

Journal Article

CD169+ macrophages mediate pathological formation of woven bone in skeletal lesions of prostate cancer

Wu, Andy C., He, Yaowu, Broomfield, Amy, Paatan, Nicoll J., Harrington, Brittney S., Tseng, Hsu-Wen, Beaven, Elizabeth A., Kiernan, Deirdre M., Swindle, Peter, Clubb, Adrian B., Levesque, Jean-Pierre, Winkler, Ingrid G., Ling, Ming-Tat, Srinivasan, Bhuvana, Hooper, John D. and Pettit, Allison R. (2016). CD169+ macrophages mediate pathological formation of woven bone in skeletal lesions of prostate cancer. Journal of Pathology, 239 (2), 218-230. doi: 10.1002/path.4718

CD169+ macrophages mediate pathological formation of woven bone in skeletal lesions of prostate cancer

2016

Journal Article

Inflammation-driven bone formation in a mouse model of ankylosing spondylitis: sequential not parallel processes

Tseng, Hsu-Wen, Pitt, Miranda E., Glant, Tibor T., McRae, Allan F., Kenna, Tony J., Brown, Matthew A., Pettit, Allison R. and Thomas, Gethin P. (2016). Inflammation-driven bone formation in a mouse model of ankylosing spondylitis: sequential not parallel processes. Arthritis Research and Therapy, 18 (1) 35, 35. doi: 10.1186/s13075-015-0805-0

Inflammation-driven bone formation in a mouse model of ankylosing spondylitis: sequential not parallel processes

2016

Conference Publication

Radio-resistant recipient bone marrow (BM) macrophages (Macs) are necessary for hematopoietic stem cell (HSC) engraftment post transplantation

Levesque, Jean-Pierre, Kaur, Simranpreet, Jacobsen, Rebecca, Millard, Susan, Batoon, Lena, Winkler, Ingrid, Macdonald, Kelli, Perkins, Andrew, Hume, David, Raggatt, Liza and Pettit, Allison (2016). Radio-resistant recipient bone marrow (BM) macrophages (Macs) are necessary for hematopoietic stem cell (HSC) engraftment post transplantation. 45th Annual Scientific Meeting of the ISEH – International Society for Experimental Hematology, San Diego, CA, United States, 25-28 August, 2016. Philadelphia, PA, United States: Elsevier. doi: 10.1016/j.exphem.2016.06.049

Radio-resistant recipient bone marrow (BM) macrophages (Macs) are necessary for hematopoietic stem cell (HSC) engraftment post transplantation

2016

Conference Publication

Recipient bone marrow (BM) macrophages (Macs) are vital for haematopoietic stem cell (HSC) engraftment post autologous transplantation

Kaur, S., Raggatt, L. J., Jacobsen, R. N., Millard, S., Batoon, L., Winkler, I. G., Macdonald, K. P. A., Perkins, A. C., Hume, D. A., Levesque, J. P. and Pettit, A. R. (2016). Recipient bone marrow (BM) macrophages (Macs) are vital for haematopoietic stem cell (HSC) engraftment post autologous transplantation. International Congress of Immunology (ICI), Melbourne, VIC, Australia, 21-26 August 2016. Weinheim, Germany: Wiley - VCH. doi: 10.1002/eji.201670200

Recipient bone marrow (BM) macrophages (Macs) are vital for haematopoietic stem cell (HSC) engraftment post autologous transplantation

2015

Journal Article

Osteoclasts control reactivation of dormant myeloma cells by remodelling the endosteal niche

Lawson, Michelle A., McDonald, Michelle M., Kovacic, Natasa, Khoo, Weng Hua, Terry, Rachael L., Down, Jenny, Kaplan, Warren, Paton-Hough, Julia, Fellows, Clair, Pettitt, Jessica A., Dear, T.Neil, Van Valckenborgh, Els, Baldock, Paul A., Rogers, Michael J., Eaton, Colby L., Vanderkerken, Karin, Pettit, Allison R., Quinn, Julian M.W., Zannettino, Andrew C.W., Phan, Tri Giang and Croucher, Peter I. (2015). Osteoclasts control reactivation of dormant myeloma cells by remodelling the endosteal niche. Nature Communications, 6 (8983) 8983, 8983. doi: 10.1038/ncomms9983

Osteoclasts control reactivation of dormant myeloma cells by remodelling the endosteal niche

2015

Journal Article

Macrophages: Their Emerging Roles in Bone

Sinder, Benjamin P., Pettit, Allison R. and McCauley, Laurie K. (2015). Macrophages: Their Emerging Roles in Bone. Journal of Bone and Mineral Research, 30 (12), 2140-2149. doi: 10.1002/jbmr.2735

Macrophages: Their Emerging Roles in Bone

2015

Journal Article

Intrauterine bone marrow transplantation in osteogenesis imperfecta mice yields donor osteoclasts and osteomacs but not osteoblasts

Millard, Susan M., Pettit, Allison R., Ellis, Rebecca, Chan, Jerry K. Y., Raggatt, Liza J., Khosrotehrani, Kiarash and Fisk, Nicholas M. (2015). Intrauterine bone marrow transplantation in osteogenesis imperfecta mice yields donor osteoclasts and osteomacs but not osteoblasts. Stem Cell Reports, 5 (5), 682-689. doi: 10.1016/j.stemcr.2015.09.017

Intrauterine bone marrow transplantation in osteogenesis imperfecta mice yields donor osteoclasts and osteomacs but not osteoblasts

2015

Journal Article

Tissue engineered humanized bone supports human hematopoiesis in vivo

Holzapfel, Boris M., Hutmacher, Dietmar W., Nowlan, Bianca, Barbier, Valerie, Thibaudeau, Laure, Theodoropoulos, Christina, Hooper, John D., Loessner, Daniela, Clements, Judith A., Russell, Pamela J., Pettit, Allison R., Winkler, Ingrid G. and Levesque, Jean-Pierre (2015). Tissue engineered humanized bone supports human hematopoiesis in vivo. Biomaterials, 61, 103-114. doi: 10.1016/j.biomaterials.2015.04.057

Tissue engineered humanized bone supports human hematopoiesis in vivo

2015

Journal Article

Neurological heterotopic ossification following spinal cord injury is triggered by macrophage-mediated inflammation in muscle

Genet, Francois, Kulina, Irina, Vaquette, Cedryck, Torossian, Frederic, Millard, Susan, Pettit, Allison R., Sims, Natalie A., Anginot, Adrienne, Guerton, Bernadette, Winkler, Ingrid G., Barbier, Valerie, Lataillade, Jean-Jacques, Le Bousse-Kerdiles, Marie-Caroline, Hutmacher, Dietmar W. and Levesque, Jean-Pierre (2015). Neurological heterotopic ossification following spinal cord injury is triggered by macrophage-mediated inflammation in muscle. Journal of Pathology, 236 (2), 229-240. doi: 10.1002/path.4519

Neurological heterotopic ossification following spinal cord injury is triggered by macrophage-mediated inflammation in muscle

2015

Conference Publication

Autologous Haematopotetic Stem Cell Transplantation Requires Recipient Bm Macrophages

Kaur, Simranpreet, Raggatt, Liza J., Jacobsen, Rebecca, Millard, Susan, Barbier, Valerie, Nowlan, Bianca, Winkler, Ingrid G., MacDonald, Kelli P., Perkins, Andrew C., Hume, David A., Levesque, Jean P. and Pettit, Allison R. (2015). Autologous Haematopotetic Stem Cell Transplantation Requires Recipient Bm Macrophages. 44th Annual Scientific Meeting of the International-Society-for-Experimental-Hematology (ISEH), Kyoto, Japan, 17-19 September 2015. Philadelphia, PA, United States: Elsevier. doi: 10.1016/j.exphem.2015.06.157

Autologous Haematopotetic Stem Cell Transplantation Requires Recipient Bm Macrophages

2014

Journal Article

Fracture healing via periosteal callus formation requires macrophages for both initiation and progression of early endochondral ossification

Raggatt, Liza J., Wullschleger, Martin E., Alexander, Kylie A., Wu, Andy C. K., Millard, Susan M., Kaur, Simranpreet, Maugham, Michelle L., Gregory, Laura S., Steck, Roland and Pettit, Allison R. (2014). Fracture healing via periosteal callus formation requires macrophages for both initiation and progression of early endochondral ossification. American Journal of Pathology, 184 (12), 3192-3204. doi: 10.1016/j.ajpath.2014.08.017

Fracture healing via periosteal callus formation requires macrophages for both initiation and progression of early endochondral ossification

2014

Journal Article

Deletion of bone-marrow-derived receptor for AGEs (RAGE) improves renal function in an experimental mouse model of diabetes

Tesch, Greg, Sourris, Karly C., Summers, Shaun A., McCarthy, Domenica, Ward, Micheal S., Borg, Danielle J., Gallo, Linda A., Fotheringham, Amelia K., Pettit, Allison R., Yap, Felicia Y. T., Harcourt, Brooke E., Tan, Adeline L. Y., Kausman, Joshua Y., Nikolic-Paterson, David, Kitching, Arthur R. and Forbes, Josephine M. (2014). Deletion of bone-marrow-derived receptor for AGEs (RAGE) improves renal function in an experimental mouse model of diabetes. Diabetologia, 57 (9), 1977-1985. doi: 10.1007/s00125-014-3291-z

Deletion of bone-marrow-derived receptor for AGEs (RAGE) improves renal function in an experimental mouse model of diabetes

2014

Journal Article

Mobilization with granulocyte colony-stimulating factor blocks medullar erythropoiesis by depleting F4/80+VCAM1+CD169+ER-HR3+Ly6G+ erythroid island macrophages in the mouse

Jacobsen, Rebecca N., Forristal, Catherine E., Raggatt, Liza J., Nowlan, Bianca, Barbier, Valerie, Kaur, Simranpreet, van Rooijen, Nico, Winkler, Ingrid G., Pettit, Allison R. and Levesque, Jean-Pierre (2014). Mobilization with granulocyte colony-stimulating factor blocks medullar erythropoiesis by depleting F4/80+VCAM1+CD169+ER-HR3+Ly6G+ erythroid island macrophages in the mouse. Experimental Hematology, 42 (7), 547-561. doi: 10.1016/j.exphem.2014.03.009

Mobilization with granulocyte colony-stimulating factor blocks medullar erythropoiesis by depleting F4/80+VCAM1+CD169+ER-HR3+Ly6G+ erythroid island macrophages in the mouse

2014

Conference Publication

Deficiency of rage in bone marrow cells reduces renal injury in diabetic mice

Tesch, G. H., Sourris, K. C., Summers, S. A., Mccarthy, D., Ward, M. S., Borg, D. J., Gallo, L. A., Fotheringham, A. K., Pettit, A., Yap, F. Y. T., Harcourt, B. E., Tan, A. L. Y., Kausman, J. Y., Nikolic-Paterson, D. J., Kitching, A. R. and Forbes, J. M. (2014). Deficiency of rage in bone marrow cells reduces renal injury in diabetic mice. 50th Annual Scientific Meeting of the Australian and New Zealand Society of Nephrology, Melbourne Australia, 25–27 August 2014. Richmond Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/nep.12301

Deficiency of rage in bone marrow cells reduces renal injury in diabetic mice

2013

Journal Article

Expression profiling in spondyloarthropathy synovial biopsies highlights changes in expression of inflammatory genes in conjunction with tissue remodelling genes

Thomas, Gethin P., Duan, Ran, Pettit, Allison R., Weedon,Helen, Kaur, Simranpreet, Smith, Malcolm and Brown, Matthew A. (2013). Expression profiling in spondyloarthropathy synovial biopsies highlights changes in expression of inflammatory genes in conjunction with tissue remodelling genes. BMC Musculoskeletal Disorders, 14 (1) 354, 354. doi: 10.1186/1471-2474-14-354

Expression profiling in spondyloarthropathy synovial biopsies highlights changes in expression of inflammatory genes in conjunction with tissue remodelling genes

Funding

Current funding

  • 2024 - 2028
    Quantum triangulation for deep tissue imaging in NIR-II
    The University of Queensland in America, Inc
    Open grant
  • 2022 - 2025
    Increasing hematopoietic stem cell niches post transplantation through enhancing bone marrow macrophage resilience and regeneration mechanisms
    NHMRC IDEAS Grants
    Open grant

Past funding

  • 2018 - 2020
    Colony-stimulating factor 1 receptor tyrosine kinase, a new target to treat acute myeloid leukemia
    Cancer Council Queensland
    Open grant
  • 2018 - 2019
    Nuclear medicine suite for animals
    UQ Major Equipment and Infrastructure
    Open grant
  • 2018 - 2020
    Osteal macrophages as therapeutic targets for fracture repair
    NHMRC Project Grant
    Open grant
  • 2017 - 2020
    Characterisation of Bone and Bone Marrow Resident Tissue Macrophages
    ARC Future Fellowships
    Open grant
  • 2016
    ANZBMS Gap Fellowship
    Australian & New Zealand Bone & Mineral Society
    Open grant
  • 2016 - 2019
    Recipient bone marrow macrophages contribute to haematopoietic stem cell transplantation success
    NHMRC Project Grant
    Open grant
  • 2016 - 2018
    Why macrophages promote heterotopic ossifications following spinal cord injuries
    NHMRC Project Grant
    Open grant
  • 2015 - 2019
    Mechanisms and Treatments of Heterotopic Ossification following Spinal Cord Injuries
    United States Congressionally Directed Medical Research Programs - Spinal Cord Injury Research Program
    Open grant
  • 2015 - 2019
    IL-22 as a Suppressor of Pancreatic Beta-Cell Stress and a Treatment for Diabetes
    NHMRC Project Grant
    Open grant
  • 2015 - 2016
    Macrophages facilitate prostate cancer bone metastasis.
    Cancer Council Queensland
    Open grant
  • 2014
    Influence of macrophage activation phenotype on fracture repair
    Arthritis Foundation of Australia
    Open grant
  • 2014 - 2015
    The role of macrophages in facilitating hematopoietic stem cell engraftment and reconstitution
    Cancer Council Queensland
    Open grant
  • 2013 - 2016
    Role of bone marrow cells in leukemia progression and resistance to chemotherapy
    NHMRC Project Grant
    Open grant
  • 2012
    Multi-user in vivo and ex vivo tissue-level mechanical testing instrument for bone and stem cell research
    NHMRC Equipment Grant
    Open grant
  • 2011 - 2014
    Novel treatment approaches to prevent joint fusion in ankylosing spondylitis
    NHMRC Project Grant
    Open grant
  • 2010
    Multi-user small animal digital x-ray imaging machine for bone, cancer, inflammation and stem cell research
    UQ Major Equipment and Infrastructure
    Open grant
  • 2010 - 2013
    Preclinical optimisation of intrauterine transplantation of fetal mesenchymal stem cells for osteogenesis imperfecta.
    NHMRC Project Grant
    Open grant
  • 2010 - 2013
    Regulation of Bone Dynamics by Osteal Tissue Macrophages (Osteomacs)
    NHMRC Project Grant
    Open grant
  • 2009 - 2011
    Towards selective targeting of HDACs for anti-inflammatory applications
    NHMRC Project Grant
    Open grant
  • 2008 - 2012
    NHMRC Career Development Award (Biomedical - Level 1): Osteal macrophages: novel regulators of osteoblast function and the endosteal stem cell niche
    NHMRC Career Development Award
    Open grant
  • 2007 - 2009
    Role of bone-associated macrophages in bone remodelling and bone disease
    NHMRC Project Grant
    Open grant
  • 2006
    Characterization of the role of T cell subsets in pathologic bone destruction
    Ramaciotti Foundation
    Open grant
  • 2006
    Role of macrophage migration inhibitory factor (MIF) in osteoclastogenesis and bone erosion in rheumatoid arthritis
    Arthritis Foundation of Australia
    Open grant
  • 2005
    Role of Macrophages Residing on the Bone Surface in Bone Remodelling and Repair
    UQ Early Career Researcher
    Open grant
  • 2001 - 2005
    NHMRC CJ Martin Fellowship: The role of T cell expression of receptor-activator of NFkB ligand (RANKL) in the pathogenesis of rheumatoid arthritis bone erosion
    NHMRC Training (Postdoctoral) Fellowship
    Open grant

Supervision

Availability

Professor Allison Pettit is:
Available for supervision

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Available projects

  • Deconvoluting Tissue Resident Macrophage Biology

    Project only open to Australian Domestic Applicants at this time with competitive stipend on offer.

    Analysis of single cell preparations from tissues is a mainstay of biological discovery research. Particularly in the current era of costly investment in increasingly high dimensional analysis of single cell samples toward generation of publicly available data sets. The team exposed an unrecognised technical phenomenon that has high potential to substantively compromise single cell data accuracy across a broad range of research fields including immunology and haematology. Specifically, tissue resident macrophages are fragmented during haematopoietic single cell suspension preparation and leave behind encapsulated remnants containing membrane and cytoplasmic molecules attached to other cells they were interacting with in situ. This phenomenon profoundly compromises accurate analysis of the data generated. Using this unique perspective, the project aims to 1) expose how widespread this phenomenon is in a diverse range of tissues across age; 2) develop optimised approaches to eliminate macrophage fragmentation during haematopoietic tissue single cell preparation; and 3) take advantage of this technical phenomenon to achieve a substantive knowledge gain in understanding bone marrow macrophage specialisation.

    The outcome of this research is a broad spectrum increase in the fidelity of biology research that utilises this common approach. This will elevate translatability of research outcomes and ultimately public confidence in the Australian biology research sector. It will create opportunity to collaborate with industry toward improved development of relevant reagents and instrument technology and inform development of digital tools to deconvolute this phenomenon when analysing big data sets.

Supervision history

Current supervision

Completed supervision

Media

Enquiries

Contact Professor Allison Pettit directly for media enquiries about:

  • Bone Marrow Transplantation
  • Osteoporosis Fragility Fracture
  • Tissue regeneration

Need help?

For help with finding experts, story ideas and media enquiries, contact our Media team:

communications@uq.edu.au