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2024

Conference Publication

Prediction of non-additive genetic effects with hierarchical genomic prediction models

Powell, Owen, McLean, Greg, Brider, Jason, Saddigh, Joe, Technow, Frank, Tang, Tom, Totir, Radu, Messina, Carlos D., Hammer, Graeme and Cooper, Mark (2024). Prediction of non-additive genetic effects with hierarchical genomic prediction models. International Conference of Quantitative Genetics (ICQG) 7, Vienna, Austria, 22-26 July 2024. doi: 10.6084/m9.figshare.26425735.v1

Prediction of non-additive genetic effects with hierarchical genomic prediction models

2023

Conference Publication

APSIM-WGP: a software platform to predict crop GxExM interactions

Powell, Owen, McLean, Greg, Brider, Jason, Hammer, Graeme and Cooper, Mark (2023). APSIM-WGP: a software platform to predict crop GxExM interactions. GxExM Symposium II, Gainesville, FL USA, 6-7 November 2023.

APSIM-WGP: a software platform to predict crop GxExM interactions

2023

Conference Publication

Random Forest Importance Diagnostics can Capture Quantitative Genetic Properties of Markers for Genomic Prediction

Tomura, Shunichiro, Powell, Owen and Cooper, Mark (2023). Random Forest Importance Diagnostics can Capture Quantitative Genetic Properties of Markers for Genomic Prediction. International Congress of Genetics, Melbourne, VIC Australia, 16-21 July 2023. figShare. doi: 10.6084/m9.figshare.24211230.v1

Random Forest Importance Diagnostics can Capture Quantitative Genetic Properties of Markers for Genomic Prediction

2023

Conference Publication

GPU can Accelerate the Prediction of Complex Phenotypes

Tomura, Shunichiro, Powell, Owen and Cooper, Mark (2023). GPU can Accelerate the Prediction of Complex Phenotypes. Australasian Leadership Computing Symposium, Canberra, ACT Australia, 14-16 June 2023. doi: 10.6084/m9.figshare.24484831.v1

GPU can Accelerate the Prediction of Complex Phenotypes

2023

Conference Publication

Hierarchical Gene-Phenotype Maps as a Framework to Predict GxExM Interactions

Powell, Owen, McLean, Greg, Brider, Jason, Technow, Frank, Tang, Tom, Messina, Carlos D., Hammer, Graeme and Cooper, Mark (2023). Hierarchical Gene-Phenotype Maps as a Framework to Predict GxExM Interactions. Quantitative Genetics and Genomics Gordon Research Conference, Ventura, CA, United States, 12-17 February 2023.

Hierarchical Gene-Phenotype Maps as a Framework to Predict GxExM Interactions

2022

Conference Publication

Integrating Hierarchical G2P Maps with Genomic Prediction

Powell, Owen, McLean, Greg, Brider, Jason, Technow, Frank, Tang, Tom, Messina, Carlos D., Hammer, Graeme and Cooper, Mark (2022). Integrating Hierarchical G2P Maps with Genomic Prediction. Interdrought VII - The 7th Congress on plant production in water-limited environments, Dakar, Senegal, 1 December 2022.

Integrating Hierarchical G2P Maps with Genomic Prediction

2022

Conference Publication

Utilising prior knowledge to improve breeding

Powell, Owen, Barbier, Francois, Voss-Fels, Kai, Beveridge, Christine and Cooper, Mark (2022). Utilising prior knowledge to improve breeding. GxExM Symposium, Brisbane, QLD Australia, 3-4 November 2022.

Utilising prior knowledge to improve breeding

2022

Conference Publication

Transferring prediction models: from model organisms to crops

Powell, Owen, Barbier, Francois, Fichtner, Franziska, Sukumaran, Sivakumar, McLean, Greg, Brider, Jason, Technow, Frank, Tang, Tom, Messina, Carlos D., Jordan, David, Hammer, Graeme, Beveridge, Christine and Cooper, Mark (2022). Transferring prediction models: from model organisms to crops. TropAg International Agriculture Conference, Brisbane, QLD, Australia, 31 October - 2 November 2022.

Transferring prediction models: from model organisms to crops

2022

Conference Publication

Prior knowledge-driven branching phenotype prediction for shoot architecture improvement

Wijerathna-Yapa, A., Fortuna, N., Cooper, M. and Beveridge, C. A. (2022). Prior knowledge-driven branching phenotype prediction for shoot architecture improvement. ComBio 2022, Melbourne Convention and Exhibition Centre (MCE), 27-30 September 2022.

Prior knowledge-driven branching phenotype prediction for shoot architecture improvement

2022

Conference Publication

Increasing Predictive Ability for Crop Improvement: Linking Crop Growth Models with Whole Genome Prediction

Powell, Owen, McLean, Greg, Brider, Jason, Technow, Frank, Sukumaran, Sivakumar, Jordan, David, Hammer, Graeme and Cooper, Mark (2022). Increasing Predictive Ability for Crop Improvement: Linking Crop Growth Models with Whole Genome Prediction. AuSoRGM, Toowoomba, QLD Australia, 18-19 August 2022.

Increasing Predictive Ability for Crop Improvement: Linking Crop Growth Models with Whole Genome Prediction

2022

Conference Publication

Prior Knowledge-driven Branching Phenotype Prediction for Shoot Architecture Improvement

Wijerathna-Yapa, Akila, Fortuna, Nicole, Dun, Elizabeth, Lawson, Brodie, Cooper, Mark and Beveridge, Christine A. (2022). Prior Knowledge-driven Branching Phenotype Prediction for Shoot Architecture Improvement. ARC Centre of Excellence for Plant Success in Nature and Agriculture Research Retreat, Hobart, TAS Australia, 30 May - 1 June 2022.

Prior Knowledge-driven Branching Phenotype Prediction for Shoot Architecture Improvement

2022

Conference Publication

An Ecophysiology-Inspired Gene-Phenotype Map for Breeding

Powell, Owen, Technow, Frank, Messina, Carlos D., McLean, Greg, Brider, Jason, Van Oosterom, Erik, Wu, Alex, Jordan, David, Hammer, Graeme and Cooper, Mark (2022). An Ecophysiology-Inspired Gene-Phenotype Map for Breeding. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

An Ecophysiology-Inspired Gene-Phenotype Map for Breeding

2022

Conference Publication

The pursuit of excellence; some reflections after 50+ years of plant breeding at The University of Queensland (9771)

Lambrides, Christopher , Basford, Kaye , DeLacy, Ian , Cooper, Mark , Hardner, Craig , Godwin, Ian , Dieters, Mark and Arief, Vivi (2022). The pursuit of excellence; some reflections after 50+ years of plant breeding at The University of Queensland (9771). Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

The pursuit of excellence; some reflections after 50+ years of plant breeding at The University of Queensland (9771)

2020

Conference Publication

The impact of physiological non-additivity on variance components for complex traits

Voss-Fels, Kai, Powell, Owen, Jordan, David, Hammer, Graeme, Barbier, Francois, Werner, Christian, Hayes, Ben, Beveridge, Christine and Cooper, Mark (2020). The impact of physiological non-additivity on variance components for complex traits. The 6th International Conference on Quantitative Genetics, Brisbane, QLD Australia, 3-13 November 2020.

The impact of physiological non-additivity on variance components for complex traits

2019

Conference Publication

Environmental characterization facilitate G × E interaction to highlight the role of stay-green traits for genetic gain

Amin, Asad, Christopher, Jack, Ababaei, Behnam, Cooper, Mark, Hayes, Ben, Voss-Fels, Kai, Hickey, Lee and Chenu, Karine (2019). Environmental characterization facilitate G × E interaction to highlight the role of stay-green traits for genetic gain. Translational Photosynthesis Conference: Innovations in Agriculture for Food Security (ASPS 2019), Brisbane, QLD, Australia, 30 June - 3 July 2019.

Environmental characterization facilitate G × E interaction to highlight the role of stay-green traits for genetic gain

2018

Conference Publication

Leveraging biological insight and environmental variation to improve phenotypic prediction: integrating crop growth models (CGM) with whole genome prediction (WGP)

Messina, C. D., Technow, F., Tang, T., Totir, R., Gho, C. and Cooper, M. (2018). Leveraging biological insight and environmental variation to improve phenotypic prediction: integrating crop growth models (CGM) with whole genome prediction (WGP). International Crop Modelling Symposium on Crop Modelling for Agriculture and Food Security under Global Change (iCropM), Berlin, Germany, 15-17 March 2016. Amsterdam, Netherlands: Elsevier. doi: 10.1016/j.eja.2018.01.007

Leveraging biological insight and environmental variation to improve phenotypic prediction: integrating crop growth models (CGM) with whole genome prediction (WGP)

2014

Conference Publication

Breeding drought-tolerant maize hybrids for the US corn-belt: discovery to product

Cooper, Mark, Gho, Carla, Leafgren, Roger, Tang, Tom and Messina, Carlos (2014). Breeding drought-tolerant maize hybrids for the US corn-belt: discovery to product. 4th InterDrought Conference, Perth, Australia, 2-6 September 2013. Oxford, United Kingdom: Oxford University Press. doi: 10.1093/jxb/eru064

Breeding drought-tolerant maize hybrids for the US corn-belt: discovery to product

2010

Conference Publication

Indirect selection using reference genotype performance in a global spring wheat multi-environment trial

Mathews, Ky L., Trethowan, Richard, Milgate, Andrew, Payne, Thomas, van Ginkel, Maarten, Crossa, Jose, DeLacy, Ian H., Cooper, Mark and Chapman, Scott C. (2010). Indirect selection using reference genotype performance in a global spring wheat multi-environment trial. 8th International Wheat Conference, St Petersburg, Russia, 1-4 June 2010. St. Petersburg, Russia: N.I. Vavilov Research Institute of Plant Industry (VIR).

Indirect selection using reference genotype performance in a global spring wheat multi-environment trial

2004

Conference Publication

Changes in pedigree backgrounds of pioneer brand maize hybrids widely grown from 1930 to 1999

Smith, J. Stephen C., Duvick, Donald N., Smith, Oscar S., Cooper, Mark and Feng, Lizhi (2004). Changes in pedigree backgrounds of pioneer brand maize hybrids widely grown from 1930 to 1999.

Changes in pedigree backgrounds of pioneer brand maize hybrids widely grown from 1930 to 1999

2004

Conference Publication

Genomics, genetics, and plant breeding: a private sector perspective

Cooper, Mark, Smith, Oscar S., Graham, Geoff, Arthur, Lane, Feng, Lizhi Z. and Podlich, Dean W. (2004). Genomics, genetics, and plant breeding: a private sector perspective. Symposium on Genomics and Plant Breeding, Indianapolis, United States, 13 November 2002. Madison, WI, United States: Crop Science Society of America. doi: 10.2135/cropsci2004.1907

Genomics, genetics, and plant breeding: a private sector perspective