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2024 Journal Article In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak diseaseKaweesi, Tadeo, Colvin, John, Campbell, Lahcen, Visendi, Paul, Maslen, Gareth, Alicai, Titus and Seal, Susan (2024). In silico prediction of candidate gene targets for the management of African cassava whitefly (Bemisia tabaci, SSA1-SG1), a key vector of viruses causing cassava brown streak disease. PeerJ, 12 e16949, 1-27. doi: 10.7717/peerj.16949 |
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2023 Journal Article Near-infrared spectroscopy and machine learning algorithms for rapid and non-invasive detection of TrichurisKariyawasam, Tharanga N., Ciocchetta, Silvia, Visendi, Paul, Soares Magalhães, Ricardo J., Smith, Maxine E., Giacomin, Paul R. and Sikulu-Lord, Maggy T. (2023). Near-infrared spectroscopy and machine learning algorithms for rapid and non-invasive detection of Trichuris. PLOS Neglected Tropical Diseases, 17 (11) e0011695, e0011695. doi: 10.1371/journal.pntd.0011695 |
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2023 Journal Article Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectorsCampbell, Lahcen I., Nwezeobi, Joachim, van Brunschot, Sharon L., Kaweesi, Tadeo, Seal, Susan E., Swamy, Rekha A. R., Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M. N., Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus and Colvin, John (2023). Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. BMC Genomics, 24 (1) 408, 1-36. doi: 10.1186/s12864-023-09474-3 |
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2022 Conference Publication In vitro detection of dengue 1 virus in human whole blood, plasma, and serum with nearinfrared spectroscopyGoh, Brendon, Visendi, Paul, Ciocchetta, Silvia, Soares, Ricardo, Liu, Wenjun and Lord, Maggy (2022). In vitro detection of dengue 1 virus in human whole blood, plasma, and serum with nearinfrared spectroscopy. American Society of Tropical Medicine and Hygiene 2022 Annual Meeting, Seattle, WA, United States, October 30 - November 3, 2022. Arlington, VA United States: American Society of Tropical Medicine and Hygiene. |
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2022 Journal Article First report of the detection of DENV1 in human blood plasma with near-infrared spectroscopyGoh, Brendon, Visendi, Paul, Lord, Anton R., Ciocchetta, Silvia, Liu, Wenjun and Sikulu-Lord, Maggy T. (2022). First report of the detection of DENV1 in human blood plasma with near-infrared spectroscopy. Viruses, 14 (10) 2248, 2248. doi: 10.3390/v14102248 |
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2022 Journal Article Characterization of transposable elements within the Bemisia tabaci species complexSicat, Juan Paolo A., Visendi, Paul, Sewe, Steven O., Bouvaine, Sophie and Seal, Susan E. (2022). Characterization of transposable elements within the Bemisia tabaci species complex. Mobile DNA, 13 (1) 12, 1-16. doi: 10.1186/s13100-022-00270-6 |
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2022 Book Chapter De novo assembly of linked reads using Supernova 2.0Visendi, Paul (2022). De novo assembly of linked reads using Supernova 2.0. Plant bioinformatics. (pp. 233-243) edited by David Edwards. New York, NY, United States: Springer US. doi: 10.1007/978-1-0716-2067-0_12 |
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2022 Book Chapter Trimming and validation of illumina short reads using trimmomatic, trinity assembly, and assessment of RNA-Seq dataSewe, Steven O., Silva, Gonçalo, Sicat, Paulo, Seal, Susan E. and Visendi, Paul (2022). Trimming and validation of illumina short reads using trimmomatic, trinity assembly, and assessment of RNA-Seq data. Plant bioinformatics. (pp. 211-232) edited by David Edwards. New York, NY, United States: Springer US. doi: 10.1007/978-1-0716-2067-0_11 |
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2021 Journal Article Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbiontsBao, Xi-Yu, Yan, Jin-Yang, Yao, Ya-Lin, Wang, Yan-Bin, Visendi, Paul, Seal, Susan and Luan, Jun-Bo (2021). Lysine provisioning by horizontally acquired genes promotes mutual dependence between whitefly and two intracellular symbionts. PLoS Pathogens, 17 (11) e1010120, 1-23. doi: 10.1371/journal.ppat.1010120 |
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2021 Journal Article Genetic diversity of whitefly (Bemisia spp.) on crop and uncultivated plants in Uganda: implications for the control of this devastating pest species complex in AfricaMugerwa, Habibu, Colvin, John, Alicai, Titus, Omongo, Christopher A., Kabaalu, Richard, Visendi, Paul, Sseruwagi, Peter and Seal, Susan E. (2021). Genetic diversity of whitefly (Bemisia spp.) on crop and uncultivated plants in Uganda: implications for the control of this devastating pest species complex in Africa. Journal of Pest Science, 94 (4), 1307-1330. doi: 10.1007/s10340-021-01355-6 |
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2020 Journal Article Molecular Evolution of the Glutathione S-Transferase Family in the Bemisia tabaci Species ComplexAidlin Harari, Ofer, Santos-Garcia, Diego, Musseri, Mirit, Moshitzky, Pnina, Patel, Mitulkumar, Visendi, Paul, Seal, Susan, Sertchook, Rotem, Malka, Osnat and Morin, Shai (2020). Molecular Evolution of the Glutathione S-Transferase Family in the Bemisia tabaci Species Complex. Genome Biology and Evolution, 12 (2), 3857-3872. doi: 10.1093/gbe/evaa002 |
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2019 Journal Article Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencingSilva, Gonçalo, Bömer, Moritz, Rathnayake, Ajith I., Sewe, Steven O., Visendi, Paul, Oyekanmi, Joshua O., Quain, Marian D., Akomeah, Belinda, Kumar, P. Lava and Seal, Susan E. (2019). Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing. Plants, 8 (6) 167, 1-10. doi: 10.3390/plants8060167 |
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2019 Journal Article Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) virusesBömer, Moritz, Rathnayake, Ajith I., Visendi, Paul, Sewe, Steven O., Sicat, Juan Paolo A., Silva, Gonçalo, Kumar, P. Lava and Seal, Susan E. (2019). Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology, 105, 54-66. doi: 10.1016/j.pmpp.2018.06.003 |
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2019 Conference Publication Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studiesTulpova, Zuzana, Luo, Ming-Cheng, Toegelova, Helena, Visendi, Paul, Hayashi, Satomi, Vojta, Petr, Paux, Etienne, Kilian, Andrzej, Abrouk, Michael, Bartos, Jan, Hajduch, Marian, Batley, Jacqueline, Edwards, David, Dolezel, Jaroslav and Simkova, Hana (2019). Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies. Conference on Biotechnology of Plant Products - Green for Good IV, Olomouc Czech Republic, 19 - 22 June 2017. Amsterdam, Netherlands: Elsevier BV. doi: 10.1016/j.nbt.2018.03.003 |
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2018 Journal Article Species-complex diversification and host-plant associations in Bemisia tabaci: a plant-defence, detoxification perspective revealed by RNA-Seq analysesMalka, Osnat, Santos-Garcia, Diego, Feldmesser, Ester, Sharon, Elad, Krause-Sakate, Renate, Delatte, Hélène, van Brunschot, Sharon, Patel, Mitulkumar, Visendi, Paul, Mugerwa, Habibu, Seal, Susan, Colvin, John and Morin, Shai (2018). Species-complex diversification and host-plant associations in Bemisia tabaci: a plant-defence, detoxification perspective revealed by RNA-Seq analyses. Molecular Ecology, 27 (21), 4241-4256. doi: 10.1111/mec.14865 |
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2018 Journal Article Shifting the limits in wheat research and breeding using a fully annotated reference genomeAppels, Rudi, Eversole, Kellye, Feuillet, Catherine, Keller, Beat, Rogers, Jane, Stein, Nils, Pozniak, Curtis J., Choulet, Frédéric, Distelfeld, Assaf, Poland, Jesse, Ronen, Gil, Barad, Omer, Baruch, Kobi, Keeble-Gagnère, Gabriel, Mascher, Martin, Ben-Zvi, Gil, Josselin, Ambre-Aurore, Himmelbach, Axel, Balfourier, François, Gutierrez-Gonzalez, Juan, Hayden, Matthew, Koh, Chu Shin, Muehlbauer, Gary, Pasam, Raj K., Paux, Etienne, Rigault, Philippe, Tibbits, Josquin, Tiwari, Vijay, Spannagl, Manuel ... THE INTERNATIONAL WHEAT GENOME SEQUENCING CONSORTIUM (IWGSC) (2018). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361 (6403) eaar7191, 1-14. doi: 10.1126/science.aar7191 |
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2018 Journal Article Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnavirusesBömer, Moritz, Rathnayake, Ajith I., Visendi, Paul, Silva, Gonçalo and Seal, Susan E. (2018). Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology, 163 (2), 533-538. doi: 10.1007/s00705-017-3605-9 |
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2018 Journal Article A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a referenceChan, Chon-Kit Kenneth, Rosic, Nedeljka, Lorenc, Michał T., Visendi, Paul, Lin, Meng, Kaniewska, Paulina, Ferguson, Brett J., Gresshoff, Peter M., Batley, Jacqueline and Edwards, David (2018). A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference. Functional and Integrative Genomics, 19 (2), 363-371. doi: 10.1007/s10142-018-0647-3 |
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2017 Journal Article The pangenome of hexaploid bread wheatMontenegro, Juan D. , Golicz, Agnieszka A. , Bayer, Philipp E. , Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon-Kit Kenneth, Visendi, Paul, Lai, Kaitao, Dolezel, Jaroslav, Batley, Jacqueline and Edwards, David (2017). The pangenome of hexaploid bread wheat. Plant Journal, 90 (5), 1007-1013. doi: 10.1111/tpj.13515 |
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2016 Other Outputs A novel approach for the assembly of complex genomic DNA cloned into bacterial artificial chromosome vectors: assembly and analysis of Triticum aestivum chromosome arm 7DSMuhindira, Paul Visendi (2016). A novel approach for the assembly of complex genomic DNA cloned into bacterial artificial chromosome vectors: assembly and analysis of Triticum aestivum chromosome arm 7DS. PhD Thesis, School of Agriculture and Food Sciences, The University of Queensland. doi: 10.14264/uql.2016.521 |
