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2023 Journal Article A universal reagent for detection of emerging diseases using bioengineered multifunctional yeast nanofragmentsLi, Junrong, Howard, Christopher B., Dey, Shuvashis, Lowry, Kym, Whiley, David M., Puttick, Simon, Rose, Stephen, Lobb, Richard J., Wuethrich, Alain, Edwardraja, Selvakumar and Trau, Matt (2023). A universal reagent for detection of emerging diseases using bioengineered multifunctional yeast nanofragments. Nature Nanotechnology, 18 (10), 1222-1229. doi: 10.1038/s41565-023-01415-1 |
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2022 Journal Article Exploring performance parameters of artificial allosteric protein switchesErgun Ayva, Cagla, Fiorito, Maria M., Guo, Zhong, Edwardraja, Selvakumar, Kaczmarski, Joe A., Gagoski, Dejan, Walden, Patricia, Johnston, Wayne A., Jackson, Colin J., Nebl, Tom and Alexandrov, Kirill (2022). Exploring performance parameters of artificial allosteric protein switches. Journal of Molecular Biology, 434 (17) 167678, 1-14. doi: 10.1016/j.jmb.2022.167678 |
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2022 Journal Article Engineering and exploiting synthetic allostery of NanoLuc luciferaseGuo, Zhong, Parakra, Rinky D., Xiong, Ying, Johnston, Wayne A., Walden, Patricia, Edwardraja, Selvakumar, Moradi, Shayli Varasteh, Ungerer, Jacobus P. J., Ai, Hui-wang, Phillips, Jonathan J. and Alexandrov, Kirill (2022). Engineering and exploiting synthetic allostery of NanoLuc luciferase. Nature Communications, 13 (1) 789, 789. doi: 10.1038/s41467-022-28425-2 |
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2021 Journal Article Generation of nanoyeast single-chain variable fragments as high-avidity biomaterials for dengue virus detectionFarokhinejad, Fahimeh, Lane, Rebecca E., Lobb, Richard J., Edwardraja, Selvakumar, Wuethrich, Alain, Howard, Christopher B. and Trau, Matt (2021). Generation of nanoyeast single-chain variable fragments as high-avidity biomaterials for dengue virus detection. ACS Biomaterials Science and Engineering, 7 (12) acsbiomaterials.1c01001, 5850-5860. doi: 10.1021/acsbiomaterials.1c01001 |
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2021 Journal Article Connecting artificial proteolytic and electrochemical signaling systems with caged messenger peptidesBollella, Paolo, Edwardraja, Selvakumar, Guo, Zhong, Vickers, Claudia E., Whitfield, Jason, Walden, Patricia, Melman, Artem, Alexandrov, Kirill and Katz, Evgeny (2021). Connecting artificial proteolytic and electrochemical signaling systems with caged messenger peptides. ACS Sensors, 6 (10), 3596-3603. doi: 10.1021/acssensors.1c00845 |
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2021 Journal Article Amplification-free SARS-CoV-2 detection using nanoyeast-scFv and ultrasensitive plasmonic nanobox-integrated nanomixing microassayLi, Junrong, Wuethrich, Alain, Edwardraja, Selvakumar, Lobb, Richard J., Puttick, Simon, Rose, Stephen, Howard, Christopher B. and Trau, Matt (2021). Amplification-free SARS-CoV-2 detection using nanoyeast-scFv and ultrasensitive plasmonic nanobox-integrated nanomixing microassay. Analytical Chemistry, 93 (29) acs.analchem.1c01657, 10251-10260. doi: 10.1021/acs.analchem.1c01657 |
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2021 Journal Article Self-powered molecule release systems activated with chemical signals processed through reconfigurable Implication or Inhibition Boolean logic gatesBollella, Paolo, Guo, Zhong, Edwardraja, Selvakumar, Krishna Kadambar, Vasantha, Alexandrov, Kirill, Melman, Artem and Katz, Evgeny (2021). Self-powered molecule release systems activated with chemical signals processed through reconfigurable Implication or Inhibition Boolean logic gates. Bioelectrochemistry, 138 107735, 107735. doi: 10.1016/j.bioelechem.2020.107735 |
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2020 Journal Article Control of allosteric electrochemical protein switch using magnetic signalsBollella, Paolo, Edwardraja, Selvakumar, Guo, Zhong, Alexandrov, Kirill and Katz, Evgeny (2020). Control of allosteric electrochemical protein switch using magnetic signals. Chemical Communications, 56 (64), 9206-9209. doi: 10.1039/d0cc04284f |
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2020 Journal Article Control of Allosteric Protein Electrochemical Switches with Biomolecular and Electronic SignalsBollella, Paolo, Edwardraja, Selvakumar, Guo, Zhong, Alexandrov, Kirill and Katz, Evgeny (2020). Control of Allosteric Protein Electrochemical Switches with Biomolecular and Electronic Signals. The journal of physical chemistry letters, 11 (14), 5549-5554. doi: 10.1021/acs.jpclett.0c01223 |
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2020 Journal Article Caged activators of artificial allosteric protein biosensorsEdwardraja, Selvakumar, Guo, Zhong, Whitfield, Jason, Lantadilla, Ignacio Retamal, Johnston, Wayne A., Walden, Patricia, Vickers, Claudia E. and Alexandrov, Kirill (2020). Caged activators of artificial allosteric protein biosensors. ACS Synthetic Biology, 9 (6) acssynbio.9b00500, 1306-1314. doi: 10.1021/acssynbio.9b00500 |
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2019 Journal Article Generalizable protein biosensors based on synthetic switch modulesGuo, Zhong, Johnston, Wayne A., Whitfield, Jason, Walden, Patricia, Cui, Zhenling, Wijker, Elvira, Edwardraja, Selvakumar, Retamal Lantadilla, Ignacio, Ely, Fernanda, Vickers, Claudia, Ungerer, Jacobus P. J. and Alexandrov, Kirill (2019). Generalizable protein biosensors based on synthetic switch modules. Journal of the American Chemical Society, 141 (20) jacs.8b12298, 8128-8135. doi: 10.1021/jacs.8b12298 |
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2018 Journal Article Computational screening of potential non-immunoglobulin scaffolds using overlapped conserved residues (OCR)-based fingerprintsMunussami, Ganapathiraman, Sokalingam, Sriram, Edwardraja, Selvakumar, Kim, Jung Rae, Chung, Sungwook and Lee, Sun-Gu (2018). Computational screening of potential non-immunoglobulin scaffolds using overlapped conserved residues (OCR)-based fingerprints. Korean Journal of Chemical Engineering, 35 (3), 717-724. doi: 10.1007/s11814-017-0350-4 |
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2017 Journal Article Biochemical and spectroscopic characterization of dinuclear Mn-sites in artificial four-helix bundle proteinsOlson, Tien L., Espiritu, Eduardo, Edwardraja, Selvakumar, Canarie, Elizabeth, Flores, Marco, Williams, JoAnn C., Ghirlanda, Giovanna and Allen, James P. (2017). Biochemical and spectroscopic characterization of dinuclear Mn-sites in artificial four-helix bundle proteins. Biochimica et Biophysica Acta - Bioenergetics, 1858 (12), 945-954. doi: 10.1016/j.bbabio.2017.08.013 |
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2017 Journal Article Rational design of an anticalin-type sugar-binding protein using a genetically encoded boronate side chainEdwardraja, Selvakumar, Eichinger, Andreas, Theobald, Ina, Sommer, Carina Andrea, Reichert, Andreas J and Skerra, Arne (2017). Rational design of an anticalin-type sugar-binding protein using a genetically encoded boronate side chain. ACS Synthetic Biology, 6 (12), 2241-2247. doi: 10.1021/acssynbio.7b00199 |
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2016 Journal Article Generation of efficient fingerprint for GFP-like fold and computational identification of potential GFP-like homologsEdwardraja, Selvakumar, Munussami, Ganapathiraman, Goyal, Amit and Lee, Sun-Gu (2016). Generation of efficient fingerprint for GFP-like fold and computational identification of potential GFP-like homologs. Biotechnology and Bioprocess Engineering, 21 (6), 712-719. doi: 10.1007/s12257-016-0362-7 |
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2016 Journal Article Design of dinuclear manganese cofactors for bacterial reaction centersOlson, Tien L., Espiritu, Eduardo, Edwardraja, Selvakumar, Simmons, Chad R., Williams, JoAnn C., Ghirlanda, Giovanna and Allen, James P. (2016). Design of dinuclear manganese cofactors for bacterial reaction centers. Biochimica et Biophysica Acta - Bioenergetics, 1857 (5), 539-547. doi: 10.1016/j.bbabio.2015.09.003 |
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2015 Journal Article Copper environment in artificial metalloproteins probed by electron paramagnetic resonance spectroscopyFlores, Marco, Olson, Tien L., Wang, Dong, Edwardraja, Selvakumar, Shinde, Sandip, Williams, JoAnn C., Ghirlanda, Giovanna and Allen, James P. (2015). Copper environment in artificial metalloproteins probed by electron paramagnetic resonance spectroscopy. Journal of Physical Chemistry B, 119 (43), 13825-13833. doi: 10.1021/acs.jpcb.5b04172 |
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2014 Journal Article Targeted delivery of ubiquitin-conjugated BH3 peptide-based Mcl-1 inhibitors into cancer cellsMuppidi, Avinash, Doi, Kenichiro, Edwardraja, Selvakumar, Pulayarti, Surya V. S. R. K., Szyperski, Thomas, Wang, Hong-Gang and Lin, Qing (2014). Targeted delivery of ubiquitin-conjugated BH3 peptide-based Mcl-1 inhibitors into cancer cells. Bioconjugate Chemistry, 25 (2), 424-432. doi: 10.1021/bc4005574 |
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2014 Journal Article 3-Hydroxyisobutyrate dehydrogenase-I from Pseudomonas denitrificans ATCC 13867 degrades 3-hydroxypropionic acidLee, Philah, Raj, Subramanian Mohan, Zhou, Shengfang, Ashok, Somasundar, Edwardraja, Selvakumar and Park, Sunghoon (2014). 3-Hydroxyisobutyrate dehydrogenase-I from Pseudomonas denitrificans ATCC 13867 degrades 3-hydroxypropionic acid. Biotechnology and Bioprocess Engineering, 19 (1), 1-7. doi: 10.1007/s12257-013-0487-x |
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2013 Journal Article Cloning, expression and characterization of 3-hydroxyisobutyrate dehydrogenase from Pseudomonas denitrificans ATCC 13867Zhou, Shengfang, Raj, Subramanian Mohan, Ashok, Somasundar, Edwardraja, Selvakumar, Lee, Sun-gu and Park, Sunghoon (2013). Cloning, expression and characterization of 3-hydroxyisobutyrate dehydrogenase from Pseudomonas denitrificans ATCC 13867. PLoS ONE, 8 (5) e62666, e62666. doi: 10.1371/journal.pone.0062666 |
