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2025 Journal Article Conserving Nemo: Genomic insights into the history and status of the endangered anemonefish Amphiprion mccullochi and its sister species Amphiprion akindynosLei, Chuan, Hobbs, Jean-Paul A., Riginos, Cynthia, Prata, Katharine E., Heatwole, Siobhan J. and Popovic, Iva (2025). Conserving Nemo: Genomic insights into the history and status of the endangered anemonefish Amphiprion mccullochi and its sister species Amphiprion akindynos. Conservation Genetics. doi: 10.1007/s10592-025-01678-2 |
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2024 Journal Article Natural selection could determine whether Acropora corals persist under expected climate changeLachs, Liam, Bozec, Yves-Marie, Bythell, John C., Donner, Simon D., East, Holly K., Edwards, Alasdair J., Golbuu, Yimnang, Gouezo, Marine, Guest, James R., Humanes, Adriana, Riginos, Cynthia and Mumby, Peter J. (2024). Natural selection could determine whether Acropora corals persist under expected climate change. Science, 386 (6727), 1289-1294. doi: 10.1126/science.adl6480 |
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2024 Journal Article Cryptic species and hybridisation in corals: challenges and opportunities for conservation and restorationRiginos, Cynthia, Popovic, Iva, Meziere, Zoe, Garcia, Vhon, Byrne, Ilha, Howitt, Samantha M., Ishida, Hisatake, Bairos-Novak, Kevin, Humanes, Adriana, Scharfenstein, Hugo, Richards, Thomas, Briggs, Ethan, Clark, Vanessa, Lei, Chuan, Khan, Mariam and Prata, Katharine E. (2024). Cryptic species and hybridisation in corals: challenges and opportunities for conservation and restoration. Peer Community Journal, 4 e106. doi: 10.24072/pcjournal.492 |
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2024 Journal Article A framework for optimising opportunistic collaborative syntheses to propel ecological conservationSequeira, Ana M.M., Bates, Amanda E., Hays, Graeme, Sims, David W., Andrzejaczek, Samantha, Audzijonyte, Asta, Baum, Julia K., Beal, Martin, Block, Barbara, Cinner, Joshua, Cowley, Kaitlyn, Gilman, Eric, Gleason, Arthur, Harrison, Autumn-Lynn, Hudson, Charlotte, Ishimura, Gakushi, Jabado, Rima W., Landrum, Jason P., Mangubhai, Sangeeta, McClenachan, Loren, Meagher, Laura, Riginos, Cynthia, Serrão, Ester A., Sherley, Richard B., Stuart-Smith, Rick D., Wambiji, Nina and Marley, Sarah A. (2024). A framework for optimising opportunistic collaborative syntheses to propel ecological conservation. Biological Conservation, 298 110717, 110717. doi: 10.1016/j.biocon.2024.110717 |
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2024 Journal Article Some reef-building corals only disperse metres per generationPrata, Katharine E., Bongaerts, Pim, Dwyer, John M., Ishida, Hisatake, Howitt, Samantha M., Hereward, James P., Crandall, Eric D. and Riginos, Cynthia (2024). Some reef-building corals only disperse metres per generation. Proceedings of the Royal Society B: Biological Sciences, 291 (2027) 20231988, 20231988. doi: 10.1098/rspb.2023.1988 |
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2024 Journal Article Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier ReefZhang, Jia, Schneller, Nadja M., Field, Matt A., Chan, Cheong Xin, Miller, David J., Strugnell, Jan M., Riginos, Cynthia, Bay, Line and Cooke, Ira (2024). Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier Reef. Molecular Ecology, 33 (16) e17468. doi: 10.1111/mec.17468 |
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2024 Journal Article Research priorities to support coral reefs during rapid climate changeFabricius, Katharina E., Cooley, Sarah R., Golbuu, Yimnang, Riginos, Cynthia, Gonzalez-Rivero, Manuel, Heron, Scott F., Mead, David, Cinner, Joshua and Schaffelke, Britta (2024). Research priorities to support coral reefs during rapid climate change. PLOS Climate, 3 (7) e0000435, e0000435. doi: 10.1371/journal.pclm.0000435 |
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2024 Journal Article Gene flow throughout the evolutionary history of a colour polymorphic and generalist clownfishSchmid, Sarah, Bachmann Salvy, Marianne, Garcia Jimenez, Alberto, Bertrand, Joris A. M., Cortesi, Fabio, Heim, Sara, Huyghe, Filip, Litsios, Glenn, Marcionetti, Anna, O'Donnell, James L., Riginos, Cynthia, Tettamanti, Valerio and Salamin, Nicolas (2024). Gene flow throughout the evolutionary history of a colour polymorphic and generalist clownfish. Molecular Ecology, 33 (14) e17436, e17436. doi: 10.1111/mec.17436 |
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2024 Journal Article DNA metabarcoding as a tool for characterising the spatio-temporal distribution of planktonic larvae in the phylum EchinodermataByrne, Ilha, Riginos, Cynthia, Uthicke, Sven, Brookes, Dean and Popovic, Iva (2024). DNA metabarcoding as a tool for characterising the spatio-temporal distribution of planktonic larvae in the phylum Echinodermata. Coral Reefs, 43 (3), 717-731. doi: 10.1007/s00338-024-02496-7 |
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2024 Journal Article Contaminant or goldmine? In silico assessment of Symbiodiniaceae community using coral hologenomesIshida, Hisatake, Riginos, Cynthia and Chan, Cheong Xin (2024). Contaminant or goldmine? In silico assessment of Symbiodiniaceae community using coral hologenomes. Frontiers in Protistology, 2. doi: 10.3389/frpro.2024.1376877 |
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2024 Journal Article High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predatorPopovic, Iva, Bergeron, Lucie A., Bozec, Yves-Marie, Waldvogel, Ann-Marie, Howitt, Samantha M., Damjanovic, Katarina, Patel, Frances, Cabrera, Maria G., Wörheide, Gert, Uthicke, Sven and Riginos, Cynthia (2024). High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator. PLoS Genetics, 20 (2) e1011129, e1011129. doi: 10.1371/journal.pgen.1011129 |
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2024 Journal Article Exploring coral speciation: multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier ReefMeziere, Zoe, Popovic, Iva, Prata, Katharine, Ryan, Isobel, Pandolfi, John and Riginos, Cynthia (2024). Exploring coral speciation: multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier Reef. Evolutionary Applications, 17 (1) e13644, e13644. doi: 10.1111/eva.13644 |
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2023 Journal Article Comparative landscape genomics has arrived with a splashRiginos, Cynthia and Jahnke, Marlene (2023). Comparative landscape genomics has arrived with a splash. Molecular Ecology, 32 (24), 6725-6728. doi: 10.1111/mec.17204 |
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2023 Journal Article Selecting coral species for reef restorationMadin, Joshua S., McWilliam, Michael, Quigley, Kate, Bay, Line K., Bellwood, David, Doropoulos, Christopher, Fernandes, Leanne, Harrison, Peter, Hoey, Andrew S., Mumby, Peter J., Ortiz, Juan C., Richards, Zoe T., Riginos, Cynthia, Schiettekatte, Nina M. D., Suggett, David J. and van Oppen, Madeleine J. H. (2023). Selecting coral species for reef restoration. Journal of Applied Ecology, 60 (8), 1537-1544. doi: 10.1111/1365-2664.14447 |
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2023 Journal Article The importance of timely metadata curation to the global surveillance of genetic diversityCrandall, Eric D., Toczydlowski, Rachel H., Liggins, Libby, Holmes, Ann E., Ghoojaei, Maryam, Gaither, Michelle R., Wham, Briana E., Pritt, Andrea L., Noble, Cory, Anderson, Tanner J., Barton, Randi L., Berg, Justin T., Beskid, Sofia G., Delgado, Alonso, Farrell, Emily, Himmelsbach, Nan, Queeno, Samantha R., Trinh, Thienthanh, Weyand, Courtney, Bentley, Andrew, Deck, John, Riginos, Cynthia, Bradburd, Gideon S. and Toonen, Robert J. (2023). The importance of timely metadata curation to the global surveillance of genetic diversity. Conservation Biology, 37 (4) e14061, e14061. doi: 10.1111/cobi.14061 |
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2023 Journal Article Moving beyond heritability in the search for coral adaptive potentialRichards, Thomas J., McGuigan, Katrina, Aguirre, J. David, Humanes, Adriana, Bozec, Yves‐Marie, Mumby, Peter J. and Riginos, Cynthia (2023). Moving beyond heritability in the search for coral adaptive potential. Global Change Biology, 29 (14), 3869-3882. doi: 10.1111/gcb.16719 |
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2023 Journal Article Reproducibility in ecology and evolution: Minimum standards for data and codeJenkins, Gareth B., Beckerman, Andrew P., Bellard, Céline, Benítez‐López, Ana, Ellison, Aaron M., Foote, Christopher G., Hufton, Andrew L., Lashley, Marcus A., Lortie, Christopher J., Ma, Zhaoxue, Moore, Allen J., Narum, Shawn R., Nilsson, Johan, O'Boyle, Bridget, Provete, Diogo B., Razgour, Orly, Rieseberg, Loren, Riginos, Cynthia, Santini, Luca, Sibbett, Benjamin and Peres‐Neto, Pedro R. (2023). Reproducibility in ecology and evolution: Minimum standards for data and code. Ecology and Evolution, 13 (5) e9961, e9961. doi: 10.1002/ece3.9961 |
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2023 Journal Article Research priorities for the sustainability of coral-rich western Pacific seascapesCumming, Graeme S., Adamska, Maja, Barnes, Michele L., Barnett, Jon, Bellwood, David R., Cinner, Joshua E., Cohen, Philippa J., Donelson, Jennifer M., Fabricius, Katharina, Grafton, R. Quentin, Grech, Alana, Gurney, Georgina G., Hoegh-Guldberg, Ove, Hoey, Andrew S., Hoogenboom, Mia O., Lau, Jacqueline, Lovelock, Catherine E., Lowe, Ryan, Miller, David J., Morrison, Tiffany H., Mumby, Peter J., Nakata, Martin, Pandolfi, John M., Peterson, Garry D., Pratchett, Morgan S., Ravasi, Timothy, Riginos, Cynthia, Rummer, Jodie L., Schaffelke, Britta ... Wilson, Shaun K. (2023). Research priorities for the sustainability of coral-rich western Pacific seascapes. Regional Environmental Change, 23 (2) 66, 66. doi: 10.1007/s10113-023-02051-0 |
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2022 Journal Article Comparative phylogeography in the genomic age: opportunities and challengesMcGaughran, Angela, Liggins, Libby, Marske, Katharine A., Dawson, Michael N, Schiebelhut, Lauren M., Lavery, Shane D., Knowles, L. Lacey, Moritz, Craig and Riginos, Cynthia (2022). Comparative phylogeography in the genomic age: opportunities and challenges. Journal of Biogeography, 49 (12), 2130-2144. doi: 10.1111/jbi.14481 |
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2022 Journal Article Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier ReefMatias, Ambrocio Melvin A., Popovic, Iva, Thia, Joshua A., Cooke, Ira R., Torda, Gergely, Lukoschek, Vimoksalehi, Bay, Line K., Kim, Sun W. and Riginos, Cynthia (2022). Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef. Evolutionary Applications, 16 (2), 1-18. doi: 10.1111/eva.13435 |
