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2025 Journal Article Identification and Characterization of a Protease Producing <i>Bacillus cereus</i> Strain From Tannery Waste for Efficient Dehairing of Goat SkinUddin, Md. Ekhlas, Sheikh, Md. Ramjan, Asaduzzaman, Md., Ahmed, Sohel, Kundu, Sukalyan Kumar and Sina, Abu Ali Ibn (2025). Identification and Characterization of a Protease Producing Bacillus cereus Strain From Tannery Waste for Efficient Dehairing of Goat Skin. BioMed Research International, 2025 (1). doi: 10.1155/bmri/7639181 |
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2024 Journal Article A mesoporous gold sensor unveils phospho PD-L1 in extracellular vesicles as a proxy for PD-L1 expression in lung cancer tissueShanmugasundaram, Karthik B., Ahmed, Emtiaz, Miao, Xinzhe, Kulasinghe, Arutha, Fletcher, James A., Monkman, James, Mainwaring, Paul, Masud, Mostafa Kamal, Park, Hyeongyu, Hossain, Md Shahriar A., Yamauchi, Yusuke, Sina, Abu A. I., O’Byrne, Kenneth, Wuethrich, Alain and Trau, Matt (2024). A mesoporous gold sensor unveils phospho PD-L1 in extracellular vesicles as a proxy for PD-L1 expression in lung cancer tissue. ACS Sensors, 9 (6), 3009-3016. doi: 10.1021/acssensors.4c00192 |
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2024 Journal Article Functional genomic analysis of the isolated potential probiotic <i>Lactobacillus delbrueckii</i> subsp. <i>indicus</i> TY-11 and its comparison with other <i>Lactobacillus delbrueckii</i> strainsJakaria Al-Mujahidy, Sk. Md., Kryukov, Kirill, Ikeo, Kazuho, Saito, Kei, Uddin, Md. Ekhlas and Ibn Sina, Abu Ali (2024). Functional genomic analysis of the isolated potential probiotic Lactobacillus delbrueckii subsp. indicus TY-11 and its comparison with other Lactobacillus delbrueckii strains. Microbiology Spectrum, 12 (7), e0347023. doi: 10.1128/spectrum.03470-23 |
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2024 Journal Article A mesoporous gold biosensor to investigate immune checkpoint protein heterogeneity in single lung cancer cellsAhmed, Emtiaz, Masud, Mostafa Kamal, Komatineni, Prathyusha, Dey, Shuvashis, Lobb, Richard, Hossain, Md Shahriar A., Möller, Andreas, Yamauchi, Yusuke, Sina, Abu Ali Ibn and Trau, Matt (2024). A mesoporous gold biosensor to investigate immune checkpoint protein heterogeneity in single lung cancer cells. Biosensors and Bioelectronics, 249 115984, 1-9. doi: 10.1016/j.bios.2023.115984 |
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2023 Conference Publication Methylated Whole Genome Cell-Free DNA Sequencing before Chimeric Antigen Receptor T-Cell Therapy for Large B-Cell Lymphoma Predicts Treatment OutcomesCherng, Hua-Jay J., Yang, Xiaojing, Yancey, Ryan, Gordillo, Christian A, Piorczynski, Ted B., Chan, Hei T., Ofori, Kenneth N., Bhagat, Govind, Califano, Andrea, Pro, Barbara, Booher, Keith, Amengual, Jennifer E., Reshef, Ran and Sina, Abu A. I. (2023). Methylated Whole Genome Cell-Free DNA Sequencing before Chimeric Antigen Receptor T-Cell Therapy for Large B-Cell Lymphoma Predicts Treatment Outcomes. 65th ASH Annual Meeting, San Diego, CA United States, 9-12 December 2023. Washington, DC United States: American Society of Hematology. doi: 10.1182/blood-2023-178376 |
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2023 Conference Publication Extracellular Small Vesicle Phosphorylated PD-L1 Liquid Biopsy Levels Correlate with Tumour Proportion Score (TPS) in NSCLCO'Byrne, K., Shanmugasundaram, K.B., Ahmed, E., Kulasinghe, A., Monkman, J., Fletcher, J.A., Mainwaring, P.N., Masud, M.K., Park, H., Hossain, M.S.A., Yamauchi, Y., Sina, A.A.I., Wuethrich, A. and Trau, M. (2023). Extracellular Small Vesicle Phosphorylated PD-L1 Liquid Biopsy Levels Correlate with Tumour Proportion Score (TPS) in NSCLC. 2023 World Conference on Lung Cancer, Singapore, 9-12 September 2023. New York, NY United States: Elsevier. doi: 10.1016/j.jtho.2023.09.432 |
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2023 Journal Article Multiplex SERS-lectin-immunoassay for esophageal adenocarcinoma screeningKhamis, Ramlah, Shanmugasundaram, Karthik B., Zhou, Quan, Lu, Jennifer, Zhang, Zhen, Hill, Michelle M., Sina, Abu Ali Ibn, Trau, Matt and Wuethrich, Alain (2023). Multiplex SERS-lectin-immunoassay for esophageal adenocarcinoma screening. ACS Applied Nano Materials, 6 (21), 20190-20197. doi: 10.1021/acsanm.3c03987 |
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2023 Journal Article A microfluidic liquid biopsy platform to monitor protein biomarker heterogeneity in single circulating therapy‐resistance cancer cellAhmed, Emtiaz, Shanmugasundaram, Karthik Balaji, Li, Junrong, Behren, Andreas, Lobb, Richard, Möller, Andreas, Wuethrich, Alain, Dey, Shuvashis, Sina, Abu Ali Ibn and Trau, Matt (2023). A microfluidic liquid biopsy platform to monitor protein biomarker heterogeneity in single circulating therapy‐resistance cancer cell. Advanced Sensor Research, 2 (12) 2300059. doi: 10.1002/adsr.202300059 |
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2023 Journal Article Liquid biopsy snapshots of key phosphoproteomic pathways in lung cancer patients for diagnosis and therapy monitoringAhmed, Mostak, Wuethrich, Alain, Constantin, Nicolas, Shanmugasundaram, Karthik Balaji, Mainwaring, Paul, Kulasinghe, Arutha, O’Leary, Connor, O’Byrne, Ken, Sina, Abu Ali Ibn, Carrascosa, Laura G. and Trau, Matt (2023). Liquid biopsy snapshots of key phosphoproteomic pathways in lung cancer patients for diagnosis and therapy monitoring. Analytical Chemistry, 95 (22), 8522-8532. doi: 10.1021/acs.analchem.3c00519 |
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2023 Journal Article Digital decoding of single extracellular vesicle phenotype differentiates early malignant and benign lung lesionsLi, Junrong, Sina, Abu A. I., Antaw, Fiach, Fielding, David, Möller, Andreas, Lobb, Richard, Wuethrich, Alain and Trau, Matt (2023). Digital decoding of single extracellular vesicle phenotype differentiates early malignant and benign lung lesions. Advanced Science, 10 (1) 2204207, e2204207. doi: 10.1002/advs.202204207 |
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2022 Journal Article Assessment of serum uric acid, urea, and glucose levels and associated factors among breast cancer patients attending a tertiary hospital in Bahirdar, Ethiopia: a comparative cross-sectional studyKebede, Tinfash, Melak, Tadele, Sina, Abu Ali Ibn and Fasil, Alebachew (2022). Assessment of serum uric acid, urea, and glucose levels and associated factors among breast cancer patients attending a tertiary hospital in Bahirdar, Ethiopia: a comparative cross-sectional study. Ethiopian Journal of Health Sciences, 32 (6), 1183-1192. doi: 10.4314/ejhs.v32i6.16 |
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2022 Journal Article Hydrogel nanoarchitectonics: an evolving paradigm for ultrasensitive biosensingNishat, Zakia Sultana, Hossain, Tanvir, Islam, Md. Nazmul, Phan, Hoang‐Phuong, Wahab, Md A., Moni, Mohammad Ali, Salomon, Carlos, Amin, Mohammed A., Sina, Abu Ali Ibn, Hossain, Md Shahriar A., Kaneti, Yusuf Valentino, Yamauchi, Yusuke and Masud, Mostafa Kamal (2022). Hydrogel nanoarchitectonics: an evolving paradigm for ultrasensitive biosensing. Small, 18 (26) 2107571, 2107571. doi: 10.1002/smll.202107571 |
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2022 Journal Article An electrochemical and raman scattering dual detection biosensor for rapid screening and biomolecular profiling of cancer biomarkersDey, Shuvashis, Ahmed, Emtiaz, Somvanshi, Pranjal Satishchandra, Sina, Abu Ali Ibn, Wuethrich, Alain and Trau, Matt (2022). An electrochemical and raman scattering dual detection biosensor for rapid screening and biomolecular profiling of cancer biomarkers. Chemosensors, 10 (3) 93, 93. doi: 10.3390/chemosensors10030093 |
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2022 Journal Article Opportunities for early cancer detection: the rise of ctDNA methylation-based pan-cancer screening technologiesConstantin, Nicolas, Sina, Abu Ali Ibn, Korbie, Darren and Trau, Matt (2022). Opportunities for early cancer detection: the rise of ctDNA methylation-based pan-cancer screening technologies. Epigenomes, 6 (1) 6, 6. doi: 10.3390/epigenomes6010006 |
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2022 Journal Article Toward precision oncology: SERS microfluidic systems for multiplex biomarker analysis in liquid biopsyShanmugasundaram, Karthik Balaji, Li, Junrong, Sina, Abu Ibn, Wuethrich, Alain and Trau, Matt (2022). Toward precision oncology: SERS microfluidic systems for multiplex biomarker analysis in liquid biopsy. Materials Advances, 3 (3), 1459-1471. doi: 10.1039/d1ma00848j |
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2021 Journal Article Simultaneous detection of dual food adulterants using graphene oxide and gold nanoparticle based surface enhanced Raman scattering duplex DNA biosensorKhalil, Ibrahim, Yehye, Wageeh A., Muhd Julkapli, Nurhidayatullaili, Ibn Sina, Abu Ali, Islam Chowdhury, Faisal, Khandaker, Mayeen Uddin, Hsiao, Vincent K.S. and Basirun, Wan Jefrey (2021). Simultaneous detection of dual food adulterants using graphene oxide and gold nanoparticle based surface enhanced Raman scattering duplex DNA biosensor. Vibrational Spectroscopy, 116 103293, 103293. doi: 10.1016/j.vibspec.2021.103293 |
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2021 Journal Article Characterizing the heterogeneity of small extracellular vesicle populations in multiple cancer types via an ultrasensitive chipWang, Jing, Wuethrich, Alain, Lobb, Richard J., Antaw, Fiach, Sina, Abu Ali Ibn, Lane, Rebecca E., Zhou, Quan, Zieschank, Chloe, Bell, Caroline, Bonazzi, Vanessa F., Aoude, Lauren G., Everitt, Sarah, Yeo, Belinda, Barbour, Andrew P., Möller, Andreas and Trau, Matt (2021). Characterizing the heterogeneity of small extracellular vesicle populations in multiple cancer types via an ultrasensitive chip. ACS Sensors, 6 (9) acssensors.1c00358, 3182-3194. doi: 10.1021/acssensors.1c00358 |
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2021 Journal Article In situ single cell proteomics reveals circulating tumor cell heterogeneity during treatmentReza, K. Kamil, Dey, Shuvashis, Wuethrich, Alain, Wang, Jing, Behren, Andreas, Antaw, Fiach, Wang, Yuling, Sina, Abu Ali Ibn and Trau, Matt (2021). In situ single cell proteomics reveals circulating tumor cell heterogeneity during treatment. ACS Nano, 15 (7) acsnano.0c10008, 11231-11243. doi: 10.1021/acsnano.0c10008 |
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2021 Journal Article A study on the interfacial compatibility, microstructure and physico-chemical properties of polyimide/organically modified silica nanocomposite membraneWahab, Md, Karim, Mohammad, Aijaz, Muhammad, Salahuddin, Bidita, Aziz, Shazed and Sina, Abu (2021). A study on the interfacial compatibility, microstructure and physico-chemical properties of polyimide/organically modified silica nanocomposite membrane. Polymers, 13 (8) 1328, 1-11. doi: 10.3390/polym13081328 |
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2021 Book Chapter Simultaneous BRAFV600E protein and DNA aberration detection in circulating melanoma cells using an integrated multimolecular sensorWuethrich, Alain, Dey, Shuvashis, Koo, Kevin M, Sina, Abu A. I. and Trau, Matt (2021). Simultaneous BRAFV600E protein and DNA aberration detection in circulating melanoma cells using an integrated multimolecular sensor. Melanoma. (pp. 265-276) New York, NY, United States: Humana Press. doi: 10.1007/978-1-0716-1205-7_20 |
