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2022

Journal Article

Links between celiac disease and small intestinal bacterial overgrowth: A systematic review and meta‐analysis

Shah, Ayesha, Thite, Parag, Hansen, Teressa, Kendall, Bradley J., Sanders, David S., Morrison, Mark, Jones, Michael P. and Holtmann, Gerald (2022). Links between celiac disease and small intestinal bacterial overgrowth: A systematic review and meta‐analysis. Journal of Gastroenterology and Hepatology, 37 (10), 1844-1852. doi: 10.1111/jgh.15920

Links between celiac disease and small intestinal bacterial overgrowth: A systematic review and meta‐analysis

2022

Journal Article

Evidence-based and emerging diet recommendations for small bowel disorders

Rej, Anupam, Potter, Michael D. E., Talley, Nicholas J., Shah, Ayesha, Holtmann, Gerald and Sanders, David Surendran (2022). Evidence-based and emerging diet recommendations for small bowel disorders. American Journal of Gastroenterology, 117 (6), 958-964. doi: 10.14309/ajg.0000000000001764

Evidence-based and emerging diet recommendations for small bowel disorders

2022

Journal Article

Utilising lipid and, arginine and proline metabolism in blood plasma to differentiate the biochemical expression in functional dyspepsia (FD) and irritable bowel syndrome (IBS)

Karpe, Avinash V., Liu, Jian-Wei, Shah, Ayesha, Koloski, Natasha, Holtmann, Gerald and Beale, David J. (2022). Utilising lipid and, arginine and proline metabolism in blood plasma to differentiate the biochemical expression in functional dyspepsia (FD) and irritable bowel syndrome (IBS). Metabolomics, 18 (6) 38, 1-11. doi: 10.1007/s11306-022-01900-z

Utilising lipid and, arginine and proline metabolism in blood plasma to differentiate the biochemical expression in functional dyspepsia (FD) and irritable bowel syndrome (IBS)

2022

Journal Article

Current and future approaches for diagnosing small intestinal dysbiosis in patients with symptoms of functional dyspepsia

Shah, Ayesha, Talley, Nicholas J. and Holtmann, Gerald (2022). Current and future approaches for diagnosing small intestinal dysbiosis in patients with symptoms of functional dyspepsia. Frontiers in Neuroscience, 16 830356, 1-12. doi: 10.3389/fnins.2022.830356

Current and future approaches for diagnosing small intestinal dysbiosis in patients with symptoms of functional dyspepsia

2022

Conference Publication

Influence of proton pump inhibitors on the mucosa associated microbiome in the small intestine and colon

Shah, Ayesha, Sternes, Peter R., Pintos, Camila Ayala, Kang, Seungha, Jones, Michael P., Tyson, Gene, Morrison, Mark and Holtmann, Gerald J. (2022). Influence of proton pump inhibitors on the mucosa associated microbiome in the small intestine and colon. American Gastroenterological Association Conference 2022, Chicago, IL United States, 6-9 May 2022. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(22)62401-6

Influence of proton pump inhibitors on the mucosa associated microbiome in the small intestine and colon

2022

Conference Publication

Strain-level functional and phenotypic resolution of the duodenal mucosa-associated microbiota in functional dyspepsia and healthy control subjects via a novel ex vivo combination of microbe culture and metagenomic sequencing

Schooth, Lauren F., Ahmed, Ahmed Sid, Kang, Seungha, Shah, Ayesha, Fairlie, Thomas, Teh, Jing Jie, Lim, Yenkai, Hoedt, Emily C., Talley, Nicholas J., Keely, Simon, Holtmann, Gerald J. and Morrison, Mark (2022). Strain-level functional and phenotypic resolution of the duodenal mucosa-associated microbiota in functional dyspepsia and healthy control subjects via a novel ex vivo combination of microbe culture and metagenomic sequencing. American Gastroenterological Association Conference 2022, Chicago, IL United States, 6-9 May 2022. Philadelphia, PA United States: Elsevier. doi: 10.1016/s0016-5085(22)61208-3

Strain-level functional and phenotypic resolution of the duodenal mucosa-associated microbiota in functional dyspepsia and healthy control subjects via a novel ex vivo combination of microbe culture and metagenomic sequencing

2022

Journal Article

Role of the duodenal microbiota in functional dyspepsia

Brown, Georgia, Hoedt, Emily C., Keely, Simon, Shah, Ayesha, Walker, Marjorie M., Holtmann, Gerald and Talley, Nicholas J. (2022). Role of the duodenal microbiota in functional dyspepsia. Neurogastroenterology and Motility, 34 (11) e14372, e14372. doi: 10.1111/nmo.14372

Role of the duodenal microbiota in functional dyspepsia

2022

Journal Article

Overlap of heartburn, functional dyspepsia, and irritable bowel syndrome in a population sample: prevalence, temporal stability, and associated comorbidities

Jones, Michael P., Shah, Ayesha, Walker, Marjorie M., Koloski, Natasha A., Holtmann, Gerald and Talley, Nicholas J. (2022). Overlap of heartburn, functional dyspepsia, and irritable bowel syndrome in a population sample: prevalence, temporal stability, and associated comorbidities. Neurogastroenterology and Motility, 34 (9) e14349, e14349. doi: 10.1111/nmo.14349

Overlap of heartburn, functional dyspepsia, and irritable bowel syndrome in a population sample: prevalence, temporal stability, and associated comorbidities

2022

Journal Article

Duodenal eosinophils and mast cells in functional dyspepsia: a systematic review and meta-analysis of case-control studies

Shah, Ayesha, Fairlie, Thomas, Brown, Georgia, Jones, Michael P., Eslick, Guy D., Duncanson, Kerith, Thapar, Nikhil, Keely, Simon, Koloski, Natasha, Shahi, Mohit, Walker, Marjorie M., Talley, Nicholas J. and Holtmann, Gerald (2022). Duodenal eosinophils and mast cells in functional dyspepsia: a systematic review and meta-analysis of case-control studies. Clinical Gastroenterology and Hepatology, 20 (10), 2229-2242.e29. doi: 10.1016/j.cgh.2022.01.014

Duodenal eosinophils and mast cells in functional dyspepsia: a systematic review and meta-analysis of case-control studies

2022

Journal Article

Small intestinal bacterial overgrowth in inflammatory bowel disease

Shah, Ayesha and Holtmann, Gerald (2022). Small intestinal bacterial overgrowth in inflammatory bowel disease. Indian Journal of Gastroenterology, 41 (1), 23-29. doi: 10.1007/s12664-021-01235-y

Small intestinal bacterial overgrowth in inflammatory bowel disease

2021

Journal Article

The role of mood state and emotion regulation in the discrepancy between gastrointestinal symptom burden recorded prospectively and via recall questionnaire

Jones, Michael P., Yun, Grace, Wass, Fiona, Rixon, Hayley, Shah, Ayesha, Walker, Marjorie M., Koloski, Natasha A., Holtmann, Gerald, Talley, Nicholas J. and Beath, Alissa P. (2021). The role of mood state and emotion regulation in the discrepancy between gastrointestinal symptom burden recorded prospectively and via recall questionnaire. Neurogastroenterology and Motility, 34 (7) e14304, 1-8. doi: 10.1111/nmo.14304

The role of mood state and emotion regulation in the discrepancy between gastrointestinal symptom burden recorded prospectively and via recall questionnaire

2021

Journal Article

Clusters of community-dwelling individuals empirically derived from stool diaries correspond with clinically meaningful outcomes

Jones, Michael P., Walter, Susanna, Talley, Nicholas J., Walker, Marjorie M., Holtmann, Gerald J., Shah, Ayesha, D'Amato, Mauro, Agréus, Lars and Andreasson, Anna (2021). Clusters of community-dwelling individuals empirically derived from stool diaries correspond with clinically meaningful outcomes. European Journal of Gastroenterology and Hepatology, 33 (S1), e740-e745. doi: 10.1097/MEG.0000000000002236

Clusters of community-dwelling individuals empirically derived from stool diaries correspond with clinically meaningful outcomes

2021

Journal Article

Antibiotic use but not gastrointestinal infection frequently precedes first diagnosis of functional gastrointestinal disorders

Jones, Michael P., Shah, Ayesha, Walker, Marjorie M., Koloski, Natasha A., Holtmann, Gerald and Talley, Nicholas J. (2021). Antibiotic use but not gastrointestinal infection frequently precedes first diagnosis of functional gastrointestinal disorders. United European Gastroenterology Journal, 9 (9), 1074-1080. doi: 10.1002/ueg2.12164

Antibiotic use but not gastrointestinal infection frequently precedes first diagnosis of functional gastrointestinal disorders

2021

Journal Article

Draft genome sequence of streptococcus salivarius AGIRA0003, isolated from functional gastrointestinal disorder duodenal tissue

Hoedt, Emily C., Shanahan, Erin R., Keely, Simon, Shah, Ayesha, Burns, Grace L., Holtmann, Gerald J., Talley, Nicholas J. and Morrison, Mark (2021). Draft genome sequence of streptococcus salivarius AGIRA0003, isolated from functional gastrointestinal disorder duodenal tissue. Microbiology Resource Announcements, 10 (39) e00758, e0075821. doi: 10.1128/MRA.00758-21

Draft genome sequence of streptococcus salivarius AGIRA0003, isolated from functional gastrointestinal disorder duodenal tissue

2021

Conference Publication

Differentiation and capture of the human duodenal mucosa-associated microbiota by a novel ex vivo combination of microbe culture and metagenomic sequencing

Schooth, L., Kang, S., Lim, Y., Shah, A., Fairlie, T., Jimenez-Loayza, J., Teh, J.-J., Holtmann, G. and Morrison, M. (2021). Differentiation and capture of the human duodenal mucosa-associated microbiota by a novel ex vivo combination of microbe culture and metagenomic sequencing. GESA AGW 2021, Online, 4-12 September 2021. Richmond, VIC Australia: Wiley-Blackwell.

Differentiation and capture of the human duodenal mucosa-associated microbiota by a novel ex vivo combination of microbe culture and metagenomic sequencing

2021

Journal Article

Letter to the Editor: Oral Vancomycin Versus No Therapy for Pediatric Primary Sclerosing Cholangitis

Johnson, Kevin M., Fischer, Ryan T., Holtmann, Gerald J., Shah, Ayesha, Alrabadi, Leina and Lewindon, Peter (2021). Letter to the Editor: Oral Vancomycin Versus No Therapy for Pediatric Primary Sclerosing Cholangitis. Hepatology, 74 (3), 1716-1717. doi: 10.1002/hep.31764

Letter to the Editor: Oral Vancomycin Versus No Therapy for Pediatric Primary Sclerosing Cholangitis

2021

Journal Article

Concomitant irritable bowel syndrome does not influence the response to antimicrobial therapy in patients with functional dyspepsia

Shah, Ayesha, Gurusamy, Saravana Ruban, Hansen, Teressa, Callaghan, Gavin, Talley, Nicholas J., Koloski, Natasha, Walker, Marjorie M., Jones, Michael P., Morrison, Mark and Holtmann, Gerald J. (2021). Concomitant irritable bowel syndrome does not influence the response to antimicrobial therapy in patients with functional dyspepsia. Digestive Diseases and Sciences, 67 (6), 2299-2309. doi: 10.1007/s10620-021-07149-1

Concomitant irritable bowel syndrome does not influence the response to antimicrobial therapy in patients with functional dyspepsia

2021

Journal Article

Routine assessment of gastrointestinal symptom using a validated questionnaire in the clinical setting to assess the probability of organic or functional gastrointestinal diseases

Jones, Michael P., Shah, Ayesha, Ben-Jacob, Ronen, Talley, Nicholas J., Hansen, Teressa, Walker, Marjorie M., Gray, Marcus, Koloski, Natasha A. and Holtmann, Gerald (2021). Routine assessment of gastrointestinal symptom using a validated questionnaire in the clinical setting to assess the probability of organic or functional gastrointestinal diseases. Neurogastroenterology and Motility, 33 (8) e14091, e14091. doi: 10.1111/nmo.14091

Routine assessment of gastrointestinal symptom using a validated questionnaire in the clinical setting to assess the probability of organic or functional gastrointestinal diseases

2021

Conference Publication

Development and validation of the comprehensive endoscopy satisfaction tool (CEST)

McMaster, Jessica J., Kutyla, Marguerite J., Haig, Adam, Koloski, Natasha, Hourigan, Luke F., Meeusen, Vera, Shah, Ayesha, Talley, Nicholas J., Jones, Michael P. and Holtmann, Gerald J. (2021). Development and validation of the comprehensive endoscopy satisfaction tool (CEST). Asia Pacific Digestive Week (APDW), Kuala Lumpur, Malaysia, 19–22 August 2021. Richmond, VIC Australia: John Wiley & Sons. doi: 10.1111/jgh.15607

Development and validation of the comprehensive endoscopy satisfaction tool (CEST)

2021

Journal Article

Letter: budesonide for functional dyspepsia with duodenal eosinophilia—randomised, double-blind, placebo-controlled parallel-group trial

Talley, N. J., Walker, M. M., Jones, M., Keely, S., Koloski, N., Cameron, R., Fairlie, T., Burns, G., Shah, A., Hansen, T., Harris, G. and Holtmann, G. (2021). Letter: budesonide for functional dyspepsia with duodenal eosinophilia—randomised, double-blind, placebo-controlled parallel-group trial. Alimentary Pharmacology and Therapeutics, 53 (12), 1332-1333. doi: 10.1111/apt.16396

Letter: budesonide for functional dyspepsia with duodenal eosinophilia—randomised, double-blind, placebo-controlled parallel-group trial