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2008

Journal Article

Software engineering for artificial life, complex systems, and agent-based distillation

Watson, James, Abbass, Hussein A., Lokan, Chris and Lindsay, Peter (2008). Software engineering for artificial life, complex systems, and agent-based distillation. Complexity International, 12, 1-13.

Software engineering for artificial life, complex systems, and agent-based distillation

2008

Journal Article

Modeling the fitness of plant morphologies across three levels of complexity

Watson, James, Hanan, Jim and Wiles, Janet (2008). Modeling the fitness of plant morphologies across three levels of complexity. Biosystems, 94 (1-2), 182-190. doi: 10.1016/j.biosystems.2008.05.023

Modeling the fitness of plant morphologies across three levels of complexity

2007

Conference Publication

Dsweep: A lightweight tool for distributed parameter sweeps

Watson, J., Maetschke, S. and Wiles, J. (2007). Dsweep: A lightweight tool for distributed parameter sweeps. Seventh International Workshop on Information Processing in Cells and Tissues (IPCAT 2007), Oxford, United Kingdom, 29-31 August 2007. Brno, Czech Republic: Tribun EU.

Dsweep: A lightweight tool for distributed parameter sweeps

2007

Conference Publication

Computational techniques for modeling complex biological systems

Watson, James, Wakabayashi, Mark, Moore, Jared, Sanin Montoya, Andres, Willadsen, Kai, Geard, Nic, Bradley, Daniel and Wiles, Janet (2007). Computational techniques for modeling complex biological systems. Complex 07: 8th Asia-Pacific Complex Systems Conference, Gold Coast, QLD, Australia, 2-5 July, 2007. Canberra, ACT, Australia: COSNet.

Computational techniques for modeling complex biological systems

2007

Conference Publication

Interactively exploring distributed computational models of biology

Watson, James and Wiles, Janet (2007). Interactively exploring distributed computational models of biology. Complex 07: 8th Asia-Pacific Complex Systems Conference, Gold Coast, QLD, Australia, 2-5 July, 2007. Canberra, ACT, Australia: COSNet.

Interactively exploring distributed computational models of biology

2006

Other Outputs

From genotypes to phenotypes and back again : modeling the interaction between individual behaviour and evolution

Watson, James Robert (2006). From genotypes to phenotypes and back again : modeling the interaction between individual behaviour and evolution. PhD Thesis, School of Information Technology and Electrical Engineering, The University of Queensland. doi: 10.14264/158254

From genotypes to phenotypes and back again : modeling the interaction between individual behaviour and evolution

2005

Conference Publication

There's more to a model than code: understanding and formalizing in silico modeling experience

Wiles, Janet, Geard, Nicholas L., Watson, James, Willadsen, Kai, Mattick, John, Bradley, Daniel and Hallinan, Jennifer (2005). There's more to a model than code: understanding and formalizing in silico modeling experience. GECCO'05: The Genetic and Evolutionary Computation Conference 2005, Washington, DC, USA, 25-29 June, 2005. New York, NY, USA: Association for Computing Machinery. doi: 10.1145/1102256.1102318

There's more to a model than code: understanding and formalizing in silico modeling experience

2005

Conference Publication

Towards a network pattern language for complex systems

Watson, J. R., Hawkins, J. C., Bradley, D. R., Dassanayake, D., Wiles, J. H. and Hanan, J. S. (2005). Towards a network pattern language for complex systems. Australian Conference on Artificial Life (ACAL'05), Sydney, Australia, 5-9 December 2005. Singapore: World Scientific Publishing.

Towards a network pattern language for complex systems

2005

Journal Article

Transient phenomena in learning and evolution: genetic assimilation and genetic redistribution

Wiles, Janet, Watson, James, Tonkes, Bradley and Deacon, Terrence (2005). Transient phenomena in learning and evolution: genetic assimilation and genetic redistribution. Artificial Life, 11 (1-2), 177-188. doi: 10.1162/1064546053279026

Transient phenomena in learning and evolution: genetic assimilation and genetic redistribution

2005

Book Chapter

Towards a network pattern language for complex systems

Watson, J., Hawkins, J., Bradley, D., Dassanayake, D., Wiles, J. and Hanan, J. (2005). Towards a network pattern language for complex systems. Recent Advances In Artificial Life. (pp. 309-317) Shatin, Hong Kong: World Scientific Publishing. doi: 10.1142/9789812701497_0023

Towards a network pattern language for complex systems

2004

Journal Article

Towards More Biological Mutation Operators in Gene Regulation Studies

Watson, James, Geard, Nicholas and Wiles, Janet (2004). Towards More Biological Mutation Operators in Gene Regulation Studies. BioSystems, 76 (1-3), 239-248. doi: 10.1016/j.biosystems.2004.05.016

Towards More Biological Mutation Operators in Gene Regulation Studies

2004

Conference Publication

Software engineering for artificial life, complex systems, and agent-based distillation

Watson, J. R., Abbass, H., Lokan, C. and Lindsay, P. A. (2004). Software engineering for artificial life, complex systems, and agent-based distillation. The Seventh Asia-Pacific Conference on Complex Systems, Cairns, 6-10 December, 2004. Rockhampton: Central Queensland University.

Software engineering for artificial life, complex systems, and agent-based distillation

2003

Conference Publication

Towards More Relevant Evolutionary Models: Integrating an Artificial Genome With a Developmental Phenotype

Watson, James, Wiles, Janet and Hanan, Jim (2003). Towards More Relevant Evolutionary Models: Integrating an Artificial Genome With a Developmental Phenotype. The 1st Australian Conference on Artificial Life (ACAL 2003), Canberra, Australia, 6-7 December, 2003. Canberra, Australia: The University of New South Wales.

Towards More Relevant Evolutionary Models: Integrating an Artificial Genome With a Developmental Phenotype

2002

Conference Publication

Stability and Task Complexity: A Neural Network Model of Evolution and Learning

Watson, James, Geard, Nicholas and Wiles, Janet H. (2002). Stability and Task Complexity: A Neural Network Model of Evolution and Learning. The 8th International Conference on Artificial Life (Artificial Life VIII), Sydney, Australia, 9-13 December, 2002. Cambridge, Massachusetts: The MIT Press.

Stability and Task Complexity: A Neural Network Model of Evolution and Learning

2002

Conference Publication

The rise and fall of learning: A neural network model of the genetic assimilation of aquired traits

Watson, J. R. and Wiles, J. H. (2002). The rise and fall of learning: A neural network model of the genetic assimilation of aquired traits. 2002 Congress on Evolutionary Computation, Hawaii, 12-17 May, 2002. Piscataway, NJ: The Institute of Electrical and Electronics Engineers.

The rise and fall of learning: A neural network model of the genetic assimilation of aquired traits

2002

Conference Publication

The rise and fall of learning: a neural network model of the genetic assimilation of acquired traits

Watson, James and Wiles, Janet (2002). The rise and fall of learning: a neural network model of the genetic assimilation of acquired traits. The 2002 Congress on Evolutionary Computation (CEC 2002), Hawaii, United States, 12-17 May 2002. New York City, United States: IEEE. doi: 10.1109/CEC.2002.1006994

The rise and fall of learning: a neural network model of the genetic assimilation of acquired traits

2002

Conference Publication

Evolving Complex Integrated Behaviour by Masking and Unmasking Selection Pressures

Wiles, Janet, Watson, James, Tonkes, Bradley and Deacon, Terrence (2002). Evolving Complex Integrated Behaviour by Masking and Unmasking Selection Pressures. International Conference on Complex Systems (ICCS2002), Nashua, NH, United States, 9-14 June 2002.

Evolving Complex Integrated Behaviour by Masking and Unmasking Selection Pressures

2001

Conference Publication

How learning can guide evolution in hierarchical modular tasks

Wiles, J. H., Tonkes, B. and Watson, J. R. (2001). How learning can guide evolution in hierarchical modular tasks. Twenty-Third Annual Conference of the Cognitive Science Society, Edinburgh, Scotland, 1-4 August, 2001. Mahwah, New Jersey: Lawrence Erlbaum Associates.

How learning can guide evolution in hierarchical modular tasks