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2007

Journal Article

Robustness and state-space structure of boolean gene regulatory models

Willadsen, K. and Wiles, J. (2007). Robustness and state-space structure of boolean gene regulatory models. Journal of Theoretical Biology, 249 (4), 749-765. doi: 10.1016/j.jtbi.2007.09.004

Robustness and state-space structure of boolean gene regulatory models

2006

Journal Article

Hyperspace geography: Visualizing fitness landscapes beyond 4D

Wiles, J. and Tonkes, B. (2006). Hyperspace geography: Visualizing fitness landscapes beyond 4D. Artificial Life, 12 (2), 211-216. doi: 10.1162/106454606776073387

Hyperspace geography: Visualizing fitness landscapes beyond 4D

2006

Conference Publication

Investigating ontogenetic space with developmental cell lineages

Geard, N. L. and Wiles, J H (2006). Investigating ontogenetic space with developmental cell lineages. ALIFEx 10th International Conference on the Simulation and Synthesis of Living Systems, Indiana, USA, 3-7 June, 2006. Cambridge, Massachusetts, U.S.A.: MIT Press.

Investigating ontogenetic space with developmental cell lineages

2006

Journal Article

Hyperspace geography: Visualizing fitness landscapes beyond 4D

Wiles, Janet and Tonkes, Bradley (2006). Hyperspace geography: Visualizing fitness landscapes beyond 4D. Artificial Life, 12 (2), 211-216. doi: 10.1162/artl.2006.12.2.211

Hyperspace geography: Visualizing fitness landscapes beyond 4D

2006

Journal Article

Potential role for adult neurogenesis in the encoding of time in new memories

Aimone, JB, Wiles, J and Gage, FH (2006). Potential role for adult neurogenesis in the encoding of time in new memories. Nature Neuroscience, 9 (6), 723-727. doi: 10.1038/nn1707

Potential role for adult neurogenesis in the encoding of time in new memories

2006

Conference Publication

Effects of an RNA control layer on the state space of boolean models of genetic regulatory networks

Hallinan, J. S., Bradley, D R, Mattick, J S and Wiles, J H (2006). Effects of an RNA control layer on the state space of boolean models of genetic regulatory networks. 2006 IEEE Congress on Evolutionary Computation, Vancouver, Canada, 16-21 July, 2006. New Jersey, USA: IEEE. doi: 10.1109/cec.2006.1688626

Effects of an RNA control layer on the state space of boolean models of genetic regulatory networks

2006

Conference Publication

Effects of constitutive gene expression on the dynamics of random boolean networks

Hallinan, J. S., Bradley, D R and Wiles, J H (2006). Effects of constitutive gene expression on the dynamics of random boolean networks. 2006 IEEE Congress on Evolutionary Computation, Vancouver, Canada, 16-21 July, 2006. New Jersey, USA: IEEE. doi: 10.1109/cec.2006.1688599

Effects of constitutive gene expression on the dynamics of random boolean networks

2006

Conference Publication

Towards a spatial language for mobile robots

Schulz, R, Stockwell, P, Wakabayashi, M and Wiles, J H (2006). Towards a spatial language for mobile robots. The 6th International Conference of the Evolution of Language, Rome, Italy, 12-15 April, 2006. Singapore: World Scientific Publishing Co. Pte. Ltd.. doi: 10.1142/9789812774262_0037

Towards a spatial language for mobile robots

2005

Conference Publication

Maximally rugged NK landscapes contain the highest peaks

Skellett, B., Cairns, B. J., Geard, N. L., Tonkes, B and Wiles, J. H. (2005). Maximally rugged NK landscapes contain the highest peaks. Genetic and Evolutionary Computation Conference (GECCO 2005), Washington DC, 25-29 June, 2005. Washington DC: ACM Press. doi: 10.1145/1068009.1068107

Maximally rugged NK landscapes contain the highest peaks

2005

Journal Article

Scripting versus Emergence: Issues for Game Developers and Players in Game Environment Design

Sweetser, P. M. and Wiles, J. H. (2005). Scripting versus Emergence: Issues for Game Developers and Players in Game Environment Design. International Journal of Intelligent Games and Simulation, 4 (1), 1-9.

Scripting versus Emergence: Issues for Game Developers and Players in Game Environment Design

2005

Conference Publication

Combining influence maps and cellular automata for reactive game agents

Sweetser, P. M. and Wiles, J. H. (2005). Combining influence maps and cellular automata for reactive game agents. 6th International Conference on Intelligent Data Engineering and Automated Learning (IDEAL 2005), Brisbane, Australia, 6-8 July 2005. Berlin, Germany: Springer. doi: 10.1007/11508069_68

Combining influence maps and cellular automata for reactive game agents

2005

Journal Article

A Gene Network Model for Developing Cell Lineages

Geard, Nicholas and Wiles, Janet (2005). A Gene Network Model for Developing Cell Lineages. Artificial Life, 11 (3), 249-267. doi: 10.1162/1064546054407202

A Gene Network Model for Developing Cell Lineages

2005

Conference Publication

There's more to a model than code: understanding and formalizing in silico modeling experience

Wiles, Janet, Geard, Nicholas L., Watson, James, Willadsen, Kai, Mattick, John, Bradley, Daniel and Hallinan, Jennifer (2005). There's more to a model than code: understanding and formalizing in silico modeling experience. GECCO'05: The Genetic and Evolutionary Computation Conference 2005, Washington, DC, USA, 25-29 June, 2005. New York, NY, USA: Association for Computing Machinery. doi: 10.1145/1102256.1102318

There's more to a model than code: understanding and formalizing in silico modeling experience

2005

Journal Article

Transient phenomena in learning and evolution: genetic assimilation and genetic redistribution

Wiles, Janet, Watson, James, Tonkes, Bradley and Deacon, Terrence (2005). Transient phenomena in learning and evolution: genetic assimilation and genetic redistribution. Artificial Life, 11 (1-2), 177-188. doi: 10.1162/1064546053279026

Transient phenomena in learning and evolution: genetic assimilation and genetic redistribution

2005

Conference Publication

Perturbation analysis: A complex systems pattern

Geard, N. L., Willadsen, K. and Wiles, J. H. (2005). Perturbation analysis: A complex systems pattern. Australian Conference on Artificial Life (ACAL'05), Sydney, N.S.W., Australia, 5-8 December, 2005. Singapore: World Scientific Publishing.

Perturbation analysis: A complex systems pattern

2005

Conference Publication

Patterns in complex systems modeling

Wiles, Janet and Watson, James (2005). Patterns in complex systems modeling. Sixth International Conference on Intelligent Data Engineering and Automated Learning (IDEAL 2005), Brisbane, Australia, 6-8 July 2005. Berlin, Germany: Springer-Verlag. doi: 10.1007/11508069_69

Patterns in complex systems modeling

2005

Book

Recent advances in artificial life: advances  in natural computation - Vol. 3

H. A. Abbass, T. Bossomaier and J. Wiles eds. (2005). Recent advances in artificial life: advances  in natural computation - Vol. 3. Singapore: World Scientific Publishing . doi: 10.1142/5992

Recent advances in artificial life: advances  in natural computation - Vol. 3

2005

Conference Publication

Towards a network pattern language for complex systems

Watson, J. R., Hawkins, J. C., Bradley, D. R., Dassanayake, D., Wiles, J. H. and Hanan, J. S. (2005). Towards a network pattern language for complex systems. Australian Conference on Artificial Life (ACAL'05), Sydney, Australia, 5-9 December 2005. Singapore: World Scientific Publishing.

Towards a network pattern language for complex systems

2005

Book Chapter

Towards a network pattern language for complex systems

Watson, J., Hawkins, J., Bradley, D., Dassanayake, D., Wiles, J. and Hanan, J. (2005). Towards a network pattern language for complex systems. Recent Advances In Artificial Life. (pp. 309-317) Shatin, Hong Kong: World Scientific Publishing. doi: 10.1142/9789812701497_0023

Towards a network pattern language for complex systems

2004

Journal Article

Towards More Biological Mutation Operators in Gene Regulation Studies

Watson, James, Geard, Nicholas and Wiles, Janet (2004). Towards More Biological Mutation Operators in Gene Regulation Studies. BioSystems, 76 (1-3), 239-248. doi: 10.1016/j.biosystems.2004.05.016

Towards More Biological Mutation Operators in Gene Regulation Studies