|
2025 Journal Article Development of a quantitative PMA-16S rRNA gene sequencing workflow for absolute abundance measurements of seawater microbial communitiesThomas, Marie C., Waugh, Gretel, Damjanovic, Katarina, Vanwonterghem, Inka, Webster, Nicole S., Negri, Andrew P. and Luter, Heidi M. (2025). Development of a quantitative PMA-16S rRNA gene sequencing workflow for absolute abundance measurements of seawater microbial communities. Environmental Microbiome, 20 (1) 81, 81-1. doi: 10.1186/s40793-025-00741-2 |
|
2025 Journal Article Defining site-specific water quality guidelines for marine microbiomes under contaminant stressThomas, Marie C., Fisher, Rebecca, Waugh, Gretel, Vanwonterghem, Inka, Webster, Nicole S., Negri, Andrew P. and Luter, Heidi M. (2025). Defining site-specific water quality guidelines for marine microbiomes under contaminant stress. Environmental Science and Technology, 59 (42), 22397-22409. doi: 10.1021/acs.est.5c04124 |
|
2025 Journal Article Understanding the role of micro-organisms in the settlement of coral larvae through community ecologyTurnlund, Abigail C., O’Brien, Paul A., Rix, Laura, Webster, Nicole, Lurgi, Miguel and Vanwonterghem, Inka (2025). Understanding the role of micro-organisms in the settlement of coral larvae through community ecology. Marine Biology, 172 (3) 43. doi: 10.1007/s00227-025-04607-6 |
|
2025 Journal Article Light and dark biofilm adaptation impacts larval settlement in diverse coral speciesO'Brien, Paul A., Bell, Sara C., Rix, Laura, Turnlund, Abigail C., Kjeldsen, Shannon R., Webster, Nicole S., Negri, Andrew P., Wahab, Muhammad A. Abdul and Vanwonterghem, Inka (2025). Light and dark biofilm adaptation impacts larval settlement in diverse coral species. Environmental Microbiome, 20 (1) 11, 11. doi: 10.1186/s40793-025-00670-0 |
|
2023 Journal Article Protecting the invisible: establishing guideline values for copper toxicity to marine microbiomesThomas, Marie C., Waugh, Gretel, Vanwonterghem, Inka, Webster, Nicole S., Rinke, Christian, Fisher, Rebecca, Luter, Heidi M. and Negri, Andrew P. (2023). Protecting the invisible: establishing guideline values for copper toxicity to marine microbiomes. Science of The Total Environment, 904 166658, 1-17. doi: 10.1016/j.scitotenv.2023.166658 |
|
2023 Journal Article Linking differences in microbial network structure with changes in coral larval settlementTurnlund, Abigail C., Vanwonterghem, Inka, Botté, Emmanuelle S., Randall, Carly J., Giuliano, Christine, Kam, Lisa, Bell, Sara, O’Brien, Paul, Negri, Andrew P., Webster, Nicole S. and Lurgi, Miguel (2023). Linking differences in microbial network structure with changes in coral larval settlement. ISME Communications, 3 (1) 114, 1-12. doi: 10.1038/s43705-023-00320-x |
|
2023 Journal Article Validation of key sponge symbiont pathways using genome‐centric metatranscriptomicsO'Brien, Paul A., Tan, Shangjin, Frade, Pedro R., Robbins, Steven J., Engelberts, J. Pamela, Bell, Sara C., Vanwonterghem, Inka, Miller, David J., Webster, Nicole S., Zhang, Guojie and Bourne, David G. (2023). Validation of key sponge symbiont pathways using genome‐centric metatranscriptomics. Environmental Microbiology, 25 (12), 1-18. doi: 10.1111/1462-2920.16509 |
|
2021 Journal Article Benthic micro- and macro-community succession and coral recruitment under overfishing and nutrient enrichmentEvensen, Nicolas R., Vanwonterghem, Inka, Doropoulos, Christopher, Gouezo, Marine, Botté, Emmanuelle S., Webster, Nicole S. and Mumby, Peter J. (2021). Benthic micro- and macro-community succession and coral recruitment under overfishing and nutrient enrichment. Ecology, 102 (12) e03536, 1-16. doi: 10.1002/ecy.3536 |
|
2021 Journal Article Hydrogen peroxide in bioelectrochemical systems negatively affects microbial current generationMosquera-Romero, Suanny, Prévoteau, Antonin, Vanwonterghem, Inka, Arends, Jan B. A., Dominguez, Luis, Rousseau, Diederik P. L. and Rabaey, Korneel (2021). Hydrogen peroxide in bioelectrochemical systems negatively affects microbial current generation. Journal of Applied Electrochemistry, 51 (10), 1463-1478. doi: 10.1007/s10800-021-01586-6 |
|
2020 Journal Article Fluconazole resistance in Candida albicans is induced by Pseudomonas aeruginosa quorum sensingBandara, H. M.H.N., Wood, D. L.A., Vanwonterghem, I., Hugenholtz, P., Cheung, B. P.K. and Samaranayake, L. P. (2020). Fluconazole resistance in Candida albicans is induced by Pseudomonas aeruginosa quorum sensing. Scientific Reports, 10 (1) 7769, 7769. doi: 10.1038/s41598-020-64761-3 |
|
2020 Journal Article Introducing the mangrove microbiome initiative: Identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystemsAllard, Sarah M., Costa, Matthew T., Bulseco, Ashley N., Helfer, Véronique, Wilkins, Laetitia G. E., Hassenrück, Christiane, Zengler, Karsten, Zimmer, Martin, Erazo, Natalia, Mazza Rodrigues, Jorge L., Duke, Norman, Melo, Vânia M. M., Vanwonterghem, Inka, Junca, Howard, Makonde, Huxley M., Jiménez, Diego Javier, Tavares, Tallita C. L., Fusi, Marco, Daffonchio, Daniele, Duarte, Carlos M., Peixoto, Raquel S., Rosado, Alexandre S., Gilbert, Jack A. and Bowman, Jeff (2020). Introducing the mangrove microbiome initiative: Identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems, 5 (5) e0065820. doi: 10.1128/mSystems.00658-20 |
|
2020 Journal Article Coral reef microorganisms in a changing climateVanwonterghem, Inka and Webster, Nicole S. (2020). Coral reef microorganisms in a changing climate. iScience, 23 (4) 100972, 100972. doi: 10.1016/j.isci.2020.100972 |
|
2018 Journal Article Mechanisms of persistence of the ammonia-oxidizing bacteria Nitrosomonas to the biocide free nitrous acidLaloo, Andrew E., Wei, Justin, Wang, Dongbo, Narayanasamy, Shaman, Vanwonterghem, Inka, Waite, David, Steen, Jason, Kaysen, Anne, Heintz-Buschart, Anna, Wang, Qilin, Schulz, Benjamin, Nouwens, Amanda, Wilmes, Paul, Hugenholtz, Philip, Yuan, Zhiguo and Bond, Philip L. (2018). Mechanisms of persistence of the ammonia-oxidizing bacteria Nitrosomonas to the biocide free nitrous acid. Environmental science & technology, 52 (9), 5386-5397. doi: 10.1021/acs.est.7b04273 |
|
2018 Journal Article Addendum: Comparative genomic analysis of the class Epsilonproteobacteria and proposed reclassification to Epsilonbacteraeota (phyl. nov.) (vol 8, 682, 2017)Waite, David W., Vanwonterghem, Inka, Rinke, Christian, Parks, Donovan H., Zhang, Ying, Takai, Ken, Sievert, Stefan M., Simon, Jorg, Campbell, Barbara J., Hanson, Thomas E., Woyke, Tanja, Klotz, Martin G. and Hugenholtz, Philip (2018). Addendum: Comparative genomic analysis of the class Epsilonproteobacteria and proposed reclassification to Epsilonbacteraeota (phyl. nov.) (vol 8, 682, 2017). Frontiers in Microbiology, 9 (APR) 772, 772. doi: 10.3389/fmicb.2018.00772 |
|
2017 Journal Article Comparative genomic analysis of the class Epsilonproteobacteria and proposed reclassification to Epsilonbacteraeota (phyl. nov.)Waite, David W., Vanwonterghem, Inka, Rinke, Christian, Parks, Donovan H. , Zhang, Ying, Takai, Ken, Sievert, Stefan M. , Simon, Joerg, Campbell, Barbara J. , Hanson, Thomas E. , Woyke, Tanja, Klotz, Martin G. and Hugenholtz, Philip (2017). Comparative genomic analysis of the class Epsilonproteobacteria and proposed reclassification to Epsilonbacteraeota (phyl. nov.). Frontiers in Microbiology, 8 (APR) 682. doi: 10.3389/fmicb.2017.00682. |
|
2016 Journal Article Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomesDennis, Paul G., Virdis, Bernardino, Vanwonterghem, Inka, Hassan, Alif, Hugenholtz, Phil, Tyson, Gene W. and Rabaey, Korneel (2016). Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes. Scientific Reports, 6 (1) 39114, 39114. doi: 10.1038/srep39114 |
|
2016 Journal Article Methylotrophic methanogenesis discovered in the archaeal phylum VerstraetearchaeotaVanwonterghem, Inka, Evans, Paul N., Parks, Donovan H., Jensen, Paul D., Woodcroft, Ben J., Hugenholtz, Philip and Tyson, Gene W. (2016). Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. Nature Microbiology, 1 (16170) 16170, 16170. doi: 10.1038/nmicrobiol.2016.170 |
|
2016 Journal Article Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestionVanwonterghem, Inka, Jensen, Paul D., Rabaey, Korneel and Tyson, Gene W. (2016). Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion. Environmental Microbiology, 18 (9), 3144-3158. doi: 10.1111/1462-2920.13382 |
|
2016 Journal Article A phylogenomic analysis of the bacterial phylum fibrobacteresAbdul Rahman, Nurdyana, Parks, Donovan H., Vanwonterghem, Inka, Morrison, Mark, Tyson, Gene W. and Hugenholtz, Philip (2016). A phylogenomic analysis of the bacterial phylum fibrobacteres. Frontiers in Microbiology, 6 (JAN) 1469, 1469.1-1469.15. doi: 10.3389/fmicb.2015.01469 |
|
2015 Journal Article Selective enrichment establishes a stable performing community for microbial electrosynthesis of acetate from CO2Patil, Sunil A., Arends, Jan B. A., Vanwonterghem, Inka, Van Meerbergen, Jarne, Guo, Kun, Tyson, Gene W. and Rabaey, Korneel (2015). Selective enrichment establishes a stable performing community for microbial electrosynthesis of acetate from CO2. Environmental Science and Technology, 49 (14), 8833-8843. doi: 10.1021/es506149d |
