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2024 Journal Article Microbial solutions must be deployed against climate catastrophePeixoto, Raquel, Voolstra, Christian R., Stein, Lisa Y., Hugenholtz, Philip, Salles, Joana Falcao, Amin, Shady A., Häggblom, Max, Gregory, Ann, Makhalanyane, Thulani P., Wang, Fengping, Agbodjato, Nadège Adoukè, Wang, Yinzhao, Jiao, Nianzhi, Lennon, Jay T., Ventosa, Antonio, Bavoil, Patrik M., Miller, Virginia and Gilbert, Jack A. (2024). Microbial solutions must be deployed against climate catastrophe. Communications Biology, 7 (1) 1466, 1466. doi: 10.1038/s42003-024-07108-2 |
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2024 Journal Article Microbial solutions must be deployed against climate catastrophePeixoto, Raquel, Voolstra, Christian R., Stein, Lisa Y., Hugenholtz, Philip, Salles, Joana Falcao, Amin, Shady A., Häggblom, Max, Gregory, Ann, Makhalanyane, Thulani P., Wang, Fengping, Agbodjato, Nadège Adoukè, Wang, Yinzhao, Jiao, Nianzhi, Lennon, Jay T., Ventosa, Antonio, Bavoil, Patrik M., Miller, Virginia and Gilbert, Jack A. (2024). Microbial solutions must be deployed against climate catastrophe. npj Sustainable Agriculture, 2 (1) 23, 1-3. doi: 10.1038/s44264-024-00033-1 |
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2024 Journal Article Microbial solutions must be deployed against climate catastrophePeixoto, Raquel, Voolstra, Christian R., Stein, Lisa Y., Hugenholtz, Philip, Salles, Joana Falcao, Amin, Shady A., Haggblom, Max, Gregory, Ann, Makhalanyane, Thulani P., Wang, Fengping, Agbodjato, Nadege Adouke, Wang, Yinzhao, Jiao, Nianzhi, Lennon, Jay T., Ventosa, Antonio, Bavoil, Patrik M., Miller, Virginia and Gilbert, Jack A. (2024). Microbial solutions must be deployed against climate catastrophe. Fems Microbiology Ecology, 100 (11) fiae144. doi: 10.1093/femsec/fiae144 |
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2024 Journal Article Microbial solutions must be deployed against climate catastrophePeixoto, Raquel, Voolstra, Christian R., Stein, Lisa Y., Hugenholtz, Philip, Salles, Joana Falcao, Amin, Shady A., Haggblom, Max, Gregory, Ann, Makhalanyane, Thulani P., Wang, Fengping, Agbodjato, Nadege Adouke, Wang, Yinzhao, Jiao, Nianzhi, Lennon, Jay T., Ventosa, Antonio, Bavoil, Patrik M., Miller, Virginia and Gilbert, Jack A. (2024). Microbial solutions must be deployed against climate catastrophe. Isme Journal, 18 (1) wrae219. doi: 10.1093/ismejo/wrae219 |
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2024 Journal Article Microbial solutions must be deployed against climate catastrophePeixoto, Raquel, Voolstra, Christian R., Stein, Lisa Y., Hugenholtz, Philip, Falcao Salles, Joana, Amin, Shady A., Haggblom, Max, Gregory, Ann, Makhalanyane, Thulani P., Wang, Fengping, Agbodjato, Nadege Adouke, Wang, Yinzhao, Jiao, Nianzhi, Lennon, Jay T., Ventosa, Antonio, Bavoil, Patrik M., Miller, Virginia and Gilbert, Jack A. (2024). Microbial solutions must be deployed against climate catastrophe. Msystems, 10 (1) e0141624. doi: 10.1128/msystems.01416-24 |
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2024 Journal Article Microbial solutions must be deployed against climate catastrophePeixoto, Raquel, Voolstra, Christian R., Stein, Lisa Y., Hugenholtz, Philip, Salles, Joana Falcao, Amin, Shady A., Häggblom, Max, Gregory, Ann, Makhalanyane, Thulani P., Wang, Fengping, Agbodjato, Nadège Adoukè, Wang, Yinzhao, Jiao, Nianzhi, Lennon, Jay T., Ventosa, Antonio, Bavoil, Patrik M., Miller, Virginia and Gilbert, Jack A. (2024). Microbial solutions must be deployed against climate catastrophe. npj Biofilms and Microbiomes, 10 (1) 122, 122. doi: 10.1038/s41522-024-00591-9 |
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2024 Journal Article Options and considerations for validation of prokaryotic names under the SeqCodeVenter, Stephanus N., Rodriguez-R, Luis M., Chuvochina, Maria, Palmer, Marike, Hugenholtz, Philip and Steenkamp, Emma T. (2024). Options and considerations for validation of prokaryotic names under the SeqCode. Systematic and Applied Microbiology, 47 (6) 126554, 126554. doi: 10.1016/j.syapm.2024.126554 |
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2024 Journal Article Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolutionWilliams, Tom A., Davin, Adrian A., Szánthó, Lénárd L., Stamatakis, Alexandros, Wahl, Noah A., Woodcroft, Ben J., Soo, Rochelle M., Eme, Laura, Sheridan, Paul O., Gubry-Rangin, Cecile, Spang, Anja, Hugenholtz, Philip and Szöllősi, Gergely J. (2024). Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution. The ISME Journal, 18 (1) wrae129. doi: 10.1093/ismejo/wrae129 |
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2024 Journal Article Putative genome contamination has minimal impact on the GTDB taxonomyMussig, Aaron J., Chaumeil, Pierre-Alain, Chuvochina, Maria, Rinke, Christian, Parks, Donovan H. and Hugenholtz, Philip (2024). Putative genome contamination has minimal impact on the GTDB taxonomy. Microbial Genomics, 10 (5) 001256. doi: 10.1099/mgen.0.001256 |
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2024 Journal Article Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematics (BISMiS) in addressing challenges in the meta-data eraYu Jiao, Jian-, Abdugheni, Rashidin, Zhang, Dao-Feng, Ahmed, Iftikhar, Ali, Mukhtiar, Chuvochina, Maria, Dedysh, Svetlana N., Dong, Xiuzhu, Göker, Markus, Hedlund, Brian P., Hugenholtz, Philip, Jangid, Kamlesh, Liu, Shuang-Jiang, Moore, Edward R. B., Rao, Manik Prabhu Narsing, Oren, Aharon, Rossello-Mora, Ramon, Rekadwad, Bhagwan Narayan, Salam, Nimaichand, Shu, Wensheng, Sutcliffe, Iain C., Teo, Wee Fei Aaron, Trujillo, Martha E., Venter, Stephanus N., Whitman, William B., Zhao, Guoping and Li, Wen-Jun (2024). Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematics (BISMiS) in addressing challenges in the meta-data era. National Science Review, 11 (7) nwae168, nwae168. doi: 10.1093/nsr/nwae168 |
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2024 Journal Article Characterization of the skin microbiome in normal and cutaneous squamous cell carcinoma affected cats and dogsBromfield, Jacoba I., Zaugg, Julian, Straw, Rodney C., Cathie, Julia, Krueger, Annika, Sinha, Debottam, Chandra, Janin, Hugenholtz, Philip and Frazer, Ian H. (2024). Characterization of the skin microbiome in normal and cutaneous squamous cell carcinoma affected cats and dogs. mSphere, 9 (4) e0055523, e0055523. doi: 10.1128/msphere.00555-23 |
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2024 Journal Article Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. novMiliotis, Georgios, Sengupta, Pratyay, Hameed, Asif, Chuvochina, Maria, McDonagh, Francesca, Simpson, Anna C., Parker, Ceth W., Singh, Nitin K., Rekha, Punchappady D., Morris, Dearbháile, Raman, Karthik, Kyrpides, Nikos C., Hugenholtz, Philip and Venkateswaran, Kasthuri (2024). Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. mBio, 15 (4) e0018124, e0018124. doi: 10.1128/mbio.00181-24 |
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2024 Journal Article Faecal microbial transfer and complex carbohydrates mediate protection against COPDBudden, Kurtis F, Shukla, Shakti D, Bowerman, Kate L, Vaughan, Annalicia, Gellatly, Shaan L, Wood, David L A, Lachner, Nancy, Idrees, Sobia, Rehman, Saima Firdous, Faiz, Alen, Patel, Vyoma K, Donovan, Chantal, Alemao, Charlotte A, Shen, Sj, Amorim, Nadia, Majumder, Rajib, Vanka, Kanth S, Mason, Jazz, Haw, Tatt Jhong, Tillet, Bree, Fricker, Michael, Keely, Simon, Hansbro, Nicole, Belz, Gabrielle T, Horvat, Jay, Ashhurst, Thomas, van Vreden, Caryn, McGuire, Helen, Fazekas de St Groth, Barbara ... Hansbro, Philip M (2024). Faecal microbial transfer and complex carbohydrates mediate protection against COPD. Gut, 73 (5), 751-769. doi: 10.1136/gutjnl-2023-330521 |
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2024 Journal Article Anaerobic gut fungal communities in marsupial hostsJones, Adrienne L., Pratt, Carrie J., Meili, Casey H., Soo, Rochelle M., Hugenholtz, Philip, Elshahed, Mostafa S. and Youssef, Noha H. (2024). Anaerobic gut fungal communities in marsupial hosts. Mbio, 15 (2) e0337023, e0337023. doi: 10.1128/mbio.03370-23 |
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2024 Journal Article Multiple independent losses of sporulation and peptidoglycan in the Mycoplasmatales and related orders of the class BacilliField, Christian J., Bowerman, Kate L. and Hugenholtz, Philip (2024). Multiple independent losses of sporulation and peptidoglycan in the Mycoplasmatales and related orders of the class Bacilli. Microbial Genomics, 10 (1) 001176. doi: 10.1099/mgen.0.001176 |
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2024 Journal Article Microbial solutions must be deployed against climate catastrophePeixoto, Raquel, Voolstra, Christian R., Stein, Lisa Y., Hugenholtz, Philip, Salles, Joana Falcao, Amin, Shady A., Häggblom, Max, Gregory, Ann, Makhalanyane, Thulani P., Wang, Fengping, Agbodjato, Nadège Adoukè, Wang, Yinzhao, Jiao, Nianzhi, Lennon, Jay T., Ventosa, Antonio, Bavoil, Patrik M., Miller, Virginia and Gilbert, Jack A. (2024). Microbial solutions must be deployed against climate catastrophe. Sustainable Microbiology, 1 (1) qvae029, 1-3. doi: 10.1093/sumbio/qvae029 |
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2024 Journal Article Identification of the mechanism for dehalorespiration of monofluoroacetate in the phylum SynergistotaLeong, Lex E. X., Denman, Stuart E., Kang, Seungha, Mondot, Stanislas, Hugenholtz, Philip and McSweeney, Chris S. (2024). Identification of the mechanism for dehalorespiration of monofluoroacetate in the phylum Synergistota. Animal Bioscience, 37 (2), 396-403. doi: 10.5713/ab.23.0351 |
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2023 Journal Article A long-awaited taxogenomic investigation of the family Halomonadaceaede la Haba, Rafael R., Arahal, David R., Sánchez-Porro, Cristina, Chuvochina, Maria, Wittouck, Stijn, Hugenholtz, Philip and Ventosa, Antonio (2023). A long-awaited taxogenomic investigation of the family Halomonadaceae. Frontiers in Microbiology, 14 1293707, 1-28. doi: 10.3389/fmicb.2023.1293707 |
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2023 Journal Article Draft genome sequence of two “Candidatus Intestinicoccus colisanans” strains isolated from faeces of healthy humansZhou, Joyce, Boyd, Joel A., Nyeverecz, Bozica, Vivian, Charlotte, Angel, Nicola, Wood, David L. A., Hugenholtz, Philip, Tyson, Gene W., Krause, Lutz and Ó Cuív, Páraic (2023). Draft genome sequence of two “Candidatus Intestinicoccus colisanans” strains isolated from faeces of healthy humans. BMC Research Notes, 16 (1) 174, 1-4. doi: 10.1186/s13104-023-06447-3 |
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2023 Journal Article Corrigendum: 'A comparative genome analysis of the Bacillota (Firmicutes) class Dehalobacteriia'Song, Young C., Holland, Sophie I., Lee, Matthew, Chen, Gao, Zaugg, Julian, Löffler, Frank E., Manefield, Michael J., Hugenholtz, Philip and Kappler, Ulrike (2023). Corrigendum: 'A comparative genome analysis of the Bacillota (Firmicutes) class Dehalobacteriia'. Microbial Genomics, 9 (8) 001092. doi: 10.1099/mgen.0.001092 |
