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2011 Journal Article Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR T)Han, Cliff, Mwirichia, Romano, Chertkov, Olga, Held, Brittany, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Spring, Stefan, Sikorski, Johannes, Göker, Markus ... Detter, John C. (2011). Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR T). Standards in Genomic Sciences, 4 (3), 371-380. doi: 10.4056/sigs.2004648 |
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2011 Journal Article Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstructionReddy, Amitha P., Allgaier, Martin, Singer, Steven W., Hazen, Terry C., Simmons, Blake A., Hugenholtz, Philip and VanderGheynst, Jean S. (2011). Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstruction. Biotechnology and Bioengineering, 108 (9), 2088-2098. doi: 10.1002/bit.23176 |
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2011 Journal Article Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrassGladden, John M., Allgaier, Martin, Miller, Christopher S., Hazen, Terry C., VanderGheynst, Jean S., Hugenholtz, Philip, Simmons, Blake A. and Singer, Steven W. (2011). Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass. Applied and Environmental Microbiology, 77 (16), 5804-5812. doi: 10.1128/AEM.00032-11 |
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2011 Journal Article Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabiesPope, P. B., Smith, W., Denman, S. E., Tringe, S. G., Barry, K., Hugenholtz, P., McSweeney, C. S., McHardy, A. C. and Morrison, M. (2011). Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies. Science, 333 (6042), 646-648. doi: 10.1126/science.1205760 |
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2011 Journal Article Phage encoded H-NS: A potential Achilles heel in the bacterial defence systemSkennerton, Connor T., Angly, Florent E., Breitbart, Mya, Bragg, Lauren, He, Shaomei, McMahon, Katherine D., Hugenholtz, Philip and Tyson, Gene W. (2011). Phage encoded H-NS: A potential Achilles heel in the bacterial defence system. Plos One, 6 (5) e20095, e20095-1-e20095-7. doi: 10.1371/journal.pone.0020095 |
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2011 Journal Article Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specificationsYilmaz, Pelin, Kottmann, Renzo, Field, Dawn, Knight, Rob, Cole, James R., Amaral-Zettler, Linda, Gilbert, Jack A., Karsch-Mizrachi, Ilene, Johnston, Anjanette, Cochrane, Guy, Vaughan, Robert, Hunter, Christopher, Park, Joonhong, Morrison, Norman, Rocca-Serra, Philippe, Sterk, Peter, Arumugam, Manimozhiyan, Bailey, Mark, Baumgartner, Laura, Birren, Bruce W., Blaser, Martin J., Bonazzi, Vivien, Booth, Tim, Bork, Peer, Bushman, Frederic D., Buttigieg, Pier Luigi., Chain, Patrick S. G., Charlson, Emily, Costello, Elizabeth K. ... Glockner, Frank Oliver (2011). Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29 (5), 415-420. doi: 10.1038/nbt.1823 |
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2011 Journal Article Complete genome sequence of Deinococcus maricopensis type strain (LB-34(T))Pukall, Rüdiger, Zeytun, Ahmet, Lucas, Susan, Lapidus, Alla, Hammon, Nancy, Deshpande, Shweta, Nolan, Matt, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Mikhailova, Natalia, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brambilla, Evelyne-Marie, Rohde, Manfred, Göker, Markus, Detter, J. Chris, Woyke, Tanja ... Klenk, Hans-Peter (2011). Complete genome sequence of Deinococcus maricopensis type strain (LB-34(T)). Standards in Genomic Sciences, 4 (2), 163-172. doi: 10.4056/sigs.1633949 |
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2011 Journal Article Complete genome sequence of Odoribacter splanchnicus type strain (1651/6(T))Göker, Markus, Gronow, Sabine, Zeytun, Ahmet, Nolan, Matt, Lucas, Susan, Lapidus, Alla, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Brambilla, Evelyne-Marie, Rohde, Manfred, Detter, John C., Woyke, Tanja, Bristow, James ... Klenk, Hans-Peter (2011). Complete genome sequence of Odoribacter splanchnicus type strain (1651/6(T)). Standards in Genomic Sciences, 4 (2), 200-209. doi: 10.4056/sigs.1714269 |
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2011 Journal Article Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845(T))Mavromatis, Konstantinos, Lu, Megan, Misra, Monica, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Detter, John C., Brambilla, Evelyne-Marie, Rohde, Manfred, Göker, Markus, Gronow, Sabine, Woyke, Tanja ... Kyrpides, Nikos C. (2011). Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845(T)). Standards in Genomic Sciences, 4 (2), 144-153. doi: 10.4056/sigs.1553865 |
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2011 Journal Article Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139(T))Land, Miriam, Held, Brittany, Gronow, Sabine, Abt, Birte, Lucas, Susan, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Göker, Markus, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Lapidus, Alla (2011). Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139(T)). Standards in Genomic Sciences, 4 (2), 233-243. doi: 10.4056/sigs.1784330 |
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2011 Journal Article Complete genome sequence of Desulfurococcus mucosus type strain (O7/1(T))Wirth, Reinhard, Chertkov, Olga, Held, Brittany, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ioanna, Pagani, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Bilek, Yvonne, Hader, Thomas, Rohde, Manfred, Spring, Stefan ... Klenk, Hans-Peter (2011). Complete genome sequence of Desulfurococcus mucosus type strain (O7/1(T)). Standards in Genomic Sciences, 4 (2), 173-182. doi: 10.4056/sigs.1644004 |
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2011 Journal Article Complete genome sequence of Oceanithermus profundus type strain (506(T))Pati, Amrita, Zhang, Xiaojing, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Chen, Amy, Palaniappan, Krishna, Hauser, Loren, Jeffries, Cynthia D., Brambilla, Evelyne-Marie, Röhl, Alina, Mwirichia, Romano, Rohde, Manfred, Tindall, Brian J., Sikorski, Johannes, Wirth, Reinhard, Göker, Markus, Woyke, Tanja ... Land, Miriam (2011). Complete genome sequence of Oceanithermus profundus type strain (506(T)). Standards in Genomic Sciences, 4 (2), 210-220. doi: 10.4056/sigs.1734292 |
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2011 Journal Article Complete genome sequence of Marivirga tractuosa type strain (H-43(T))Pagani, Ioanna, Chertkov, Olga, Lapidus, Alla, Lucas, Susan, Del Rio, Tijana Glavina, Tice, Hope, Copeland, Alex, Cheng, Jan-Fang, Nolan, Matt, Saunders, Elizabeth, Pitluck, Sam, Held, Brittany, Goodwin, Lynne, Liolios, Konstantinos, Ovchinikova, Galina, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Detter, John C., Han, Cliff, Tapia, Roxanne, Ngatchou-Djao, Olivier D., Rohde, Manfred, Göker, Markus ... Kyrpides, Nikos C. (2011). Complete genome sequence of Marivirga tractuosa type strain (H-43(T)). Standards in Genomic Sciences, 4 (2), 154-162. doi: 10.4056/sigs.1623941 |
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2011 Journal Article Complete genome sequence of Bacteroides salanitronis type strain (BL78(T))Gronow, Sabine, Held, Brittany, Lucas, Susan, Lapidus, Alla, Del Rio, Tijana Glavina, Nolan, Matt, Tice, Hope, Deshpande, Shweta, Cheng, Jan-Fang, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Brambilla, Evelyne-Marie, Rohde, Manfred, Göker, Markus, Detter, John C., Woyke, Tanja ... Eisen, Jonathan A. (2011). Complete genome sequence of Bacteroides salanitronis type strain (BL78(T)). Standards in Genomic Sciences, 4 (2), 191-199. doi: 10.4056/sigs.1704212 |
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2011 Journal Article Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))Zeytun, Ahmet, Sikorski, Johannes, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Han, James, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Ngatchou-Djao, Olivier D., Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Han, Cliff, Detter, John C., Übler, Susanne, Rohde, Manfred, Tindall, Brian J., Göker, Markus ... Kyrpides, Nikos C. (2011). Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)). Standards in Genomic Sciences, 4 (2), 131-143. doi: 10.4056/sigs.1463589 |
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2011 Journal Article Complete genome sequence of Cellulophaga lytica type strain (LIM-21(T))Pati, Amrita, Abt, Birte, Teshima, Hazuki, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxane, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Detter, John C., Brambilla, Evelyne-Marie, Kannan, K. Palani, Rohde, Manfred, Spring, Stefan, Göker, Markus, Woyke, Tanja ... Ivanova, Natalia (2011). Complete genome sequence of Cellulophaga lytica type strain (LIM-21(T)). Standards in Genomic Sciences, 4 (2), 221-232. doi: 10.4056/sigs.1774329 |
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2011 Journal Article Characterization of trapped lignin-degrading microbes in tropical forest soilDeangelis, Kristen M., Allgaier, Martin, Chavarria, Yaucin, Fortney, Julian L., Hugenholtz, Philip, Simmons, Blake, Sublette, Kerry, Silver, Whendee L. and Hazen, Terry C. (2011). Characterization of trapped lignin-degrading microbes in tropical forest soil. Plos One, 6 (4) e19306, e19306.1-e19306.9. doi: 10.1371/journal.pone.0019306 |
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2011 Journal Article Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortiumLykidis, Athanasios, Chen, Chia-Lung, Tringe, Susannah G., McHardy, Alice C., Copeland, Alex, Kyrpides, Nikos C., Hugenholtz, Philip, Macarie, Hervé, Olmos, Alejandro, Monroy, Oscar and Liu, Wen-Tso (2011). Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME Journal, 5 (1), 122-130. doi: 10.1038/ismej.2010.125 |
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2011 Journal Article Complete genome sequence of Treponema succinifaciens type strain (6091(T))Han, Cliff, Gronow, Sabine, Teshima, Hazuki, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Zeytun, Ahmed, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Huntemann, Marcel, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Rohde, Manfred, Goker, Markus, Woyke, Tanja, Bristow, James ... Detter, John C. (2011). Complete genome sequence of Treponema succinifaciens type strain (6091(T)). Standards in Genomic Sciences, 4 (3), 361-370. doi: 10.4056/sigs.1984594 |
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2011 Journal Article Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21(T))Chang, Yun-Juan, Land, Miriam, Hauser, Loren, Chertkov, Olga, Del Rio, Tijana Galvina, Nolan, Matt, Copeland, Alex, Tice, Hope, Cheng, Jan-Feng, Lucas, Susan, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Mavromatis, Konstantinos, Liolios, Konstantinos, Brettin, Thomas, Fiebig, Anne, Rohde, Manfred, Abt, Birte, Goker, Markus, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A. ... Lapidus, Alla (2011). Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21(T)). Standards in Genomic Sciences, 5 (1), 97-111. doi: 10.4056/sigs.2114901 |
