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2025 Conference Publication Enhancing research through FAIR-compliant imaging data repositories: the PITSCHI – a solution for large-scale/multi-user imaging facilitiesAli, Rubbiya A., Endrei, Mark, Mason, Tom, Mudiyanselage, Nishanthi D., Carroll, Jake and Wepf, Roger (2025). Enhancing research through FAIR-compliant imaging data repositories: the PITSCHI – a solution for large-scale/multi-user imaging facilities. 13th Asia Pacific Microscopy Congress 2025 (APMC13), Brisbane, QLD Australia, 2-7 February 2025. Berlin, Germany: ScienceOpen. doi: 10.14293/apmc13-2025-0339 |
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2022 Journal Article Environmental pathways affecting gene expression (E.PAGE) as an R package to predict gene–environment associationsMuralidharan, Sachin, Ali, Sarah, Yang, Lilin, Badshah, Joshua, Zahir, Syeda Farah, Ali, Rubbiya A., Chandra, Janin, Frazer, Ian H., Thomas, Ranjeny and Mehdi, Ahmed M. (2022). Environmental pathways affecting gene expression (E.PAGE) as an R package to predict gene–environment associations. Scientific Reports, 12 (1) 18710, 1-19. doi: 10.1038/s41598-022-21988-6 |
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2022 Other Outputs E.PAGE: A curated database and enrichment tool to predict gene modules associated with gene-environment interactionsMuralidharan, Sachin, Ali, Sarah, Yang, Lilin, Badshah, Joshua, Zahir, Farah, Ali, Rubbiya, Chandra, Janin, Thomas, Ranjeny and Mehdi, Ahmed M. (2022). E.PAGE: A curated database and enrichment tool to predict gene modules associated with gene-environment interactions. |
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2019 Book Chapter Statistical and probabilistic approaches to predict protein abundanceAli, Rubbiya A., Naqi, Ali, Ali, Sarah, Fatima, Mashal, Ishaq, Musarat and Mehdi, Ahmed M. (2019). Statistical and probabilistic approaches to predict protein abundance. Encyclopedia of Bioinformatics and Computational Biology. (pp. 847-854) edited by Shoba Ranganathan, Michael Gribskov, Kenta Nakai and Christian Schönbach. Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-12-809633-8.20466-4 |
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2018 Journal Article Structure of a PSI-LHCI-cyt b6f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditionsSteinbeck, Janina, Ross, Ian L., Rothnagel, Rosalba, Gaebelein, Philipp, Schulze, Stefan, Giles, Nichole, Ali, Rubbiya, Drysdale, Rohan, Sierecki, Emma, Gambin, Yann, Stahlberg, Henning, Takahashi, Yuichiro, Hippler, Michael and Hankamer, Ben (2018). Structure of a PSI-LHCI-cyt b6f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditions. Proceedings of the National Academy of Sciences, 115 (41), 10517-10522. doi: 10.1073/pnas.1809973115 |
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2017 Journal Article RAZA: A Rapid 3D z-crossings algorithm to segment electron tomograms and extract organelles and macromoleculesAli, Rubbiya A., Mehdi, Ahmed M., Rothnagel, Rosalba, Hamilton, Nicholas A., Gerle, Christoph, Landsberg, Michael J. and Hankamer, Ben (2017). RAZA: A Rapid 3D z-crossings algorithm to segment electron tomograms and extract organelles and macromolecules. Journal of Structural Biology, 200 (2), 73-86. doi: 10.1016/j.jsb.2017.10.002 |
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2016 Other Outputs Developing 3D novel edge detection and particle picking tools for electron tomographyAli, Rubbiya Akram (2016). Developing 3D novel edge detection and particle picking tools for electron tomography. PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. doi: 10.14264/uql.2016.334 |
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2012 Journal Article A 3D image filter for parameter-free segmentation of macromolecular structures from electron tomogramsAli, Rubbiya A., Landsberg, Michael J., Knauth, Emily, Morgan, Garry P., Marsh, Brad J. and Hankamer, Ben (2012). A 3D image filter for parameter-free segmentation of macromolecular structures from electron tomograms. Plos One, 7 (3) e33697, e33697-1-e33697-12. doi: 10.1371/journal.pone.0033697 |
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2010 Journal Article GK based fuzzy clustering for the diagnosis of cardiac arrhythmiaMehdi, Ahmed M., Zayegh, Aladin, Begg, Rezaul and Ali, Rubbiya (2010). GK based fuzzy clustering for the diagnosis of cardiac arrhythmia. International Journal of Computational Intelligence and Applications, 9 (2), 105-123. doi: 10.1142/S146902681000280X |
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2009 Conference Publication A novel approach of harmonic analysis in power distribution networks using artificial intelligenceParacha, Zahir J., Kalam, Akhtar and Ali, Rubbiya (2009). A novel approach of harmonic analysis in power distribution networks using artificial intelligence. doi: 10.1109/ICICT.2009.5267198 |
