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2023 Journal Article Physical grounds for causal perspectivalismMilburn, Gerard J., Shrapnel, Sally and Evans, Peter W. (2023). Physical grounds for causal perspectivalism. Entropy, 25 (8) 1190, 1-24. doi: 10.3390/e25081190 |
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2023 Journal Article Systematic review of externally validated machine learning models for predicting acute kidney injury in general hospital patientsWainstein, Marina, Flanagan, Emily, Johnson, David W. and Shrapnel, Sally (2023). Systematic review of externally validated machine learning models for predicting acute kidney injury in general hospital patients. Frontiers in Nephrology, 3 1220214, 1-9. doi: 10.3389/fneph.2023.1220214 |
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2023 Journal Article Association of country income level with the characteristics and outcomes of critically ill patients hospitalized with acute kidney injury and COVID-19Wainstein, Marina, Spyrison, Nicholas, Dai, Danyang, Ghadimi, Moji, Chavez-Iniquez, Jonathan Samuel, Rizo Topete, Lilia María, Citarella, Barbara Wanjiru, Merson, Laura, Pole, Jason, Claure-Del Granado, Rolando, Johnson, David W., Shrapnel, Sally, Abdukahil, heryl Ann, Abdulkadir, Nurul Najmee, Abe, Ryuzo, Abel, Laurent, Abrous, Amal, Absil, Lara, Acker, Andrew, Adachi, Shingo, Adrião, Diana, Al Ageel, Saleh, Ahmed, Shakeel, Ainscough, Kate, Airlangga, Eka, Aisa, Tharwat, Hssain, Ali Ait, Tamlihat, Younes Ait, Akimoto, Takako ... ISARIC Characterization Group (2023). Association of country income level with the characteristics and outcomes of critically ill patients hospitalized with acute kidney injury and COVID-19. Kidney International Reports, 8 (8), 1514-1530. doi: 10.1016/j.ekir.2023.05.015 |
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2023 Journal Article Characteristics and outcomes of an international cohort of 600 000 hospitalized patients with COVID-19Kartsonaki, Christiana, Baillie, J Kenneth, Barrio, Noelia García, Baruch, Joaquín, Beane, Abigail, Blumberg, Lucille, Bozza, Fernando, Broadley, Tessa, Burrell, Aidan, Carson, Gail, Citarella, Barbara Wanjiru, Dagens, Andrew, Dankwa, Emmanuelle A, Donnelly, Christl A, Dunning, Jake, Elotmani, Loubna, Escher, Martina, Farshait, Nataly, Goffard, Jean-Christophe, Gonçalves, Bronner P, Hall, Matthew, Hashmi, Madiha, Sim Lim Heng, Benedict, Ho, Antonia, Jassat, Waasila, Pedrera Jiménez, Miguel, Laouenan, Cedric, Lissauer, Samantha, Martin-Loeches, Ignacio ... ISARIC Clinical Characterisation Group (2023). Characteristics and outcomes of an international cohort of 600 000 hospitalized patients with COVID-19. International Journal of Epidemiology, 52 (2), 355-376. doi: 10.1093/ije/dyad012 |
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2022 Journal Article Symptom-based case definitions for COVID-19: Time and geographical variations for detection at hospital admission among 260,000 patientsBaruch, Joaquin, Rojek, Amanda, Kartsonaki, Christiana, Vijayaraghavan, Bharath K. T., Gonçalves, Bronner P., Pritchard, Mark G., Merson, Laura, Dunning, Jake, Hall, Matthew, Sigfrid, Louise, Citarella, Barbara W., Murthy, Srinivas, Yeabah, Trokon O., Olliaro, Piero, Abbas, Ali, Abdukahil, Sheryl Ann, Abdulkadir, Nurul Najmee, Abe, Ryuzo, Abel, Laurent, Absil, Lara, Acharya, Subhash, Acker, Andrew, Adam, Elisabeth, Adrião, Diana, Al Ageel, Saleh, Ahmed, Shakeel, Ainscough, Kate, Airlangga, Eka, Aisa, Tharwat ... Zucman, David (2022). Symptom-based case definitions for COVID-19: Time and geographical variations for detection at hospital admission among 260,000 patients. Influenza and other Respiratory Viruses, 16 (6), 1040-1050. doi: 10.1111/irv.13039 |
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2022 Conference Publication Validation of UCSD-Mayo Risk Score for Predicting Hospital-Acquired AKI in COVID-19 PatientsGranado, Rolando Claure-Del, Barbosa, Nicholas Y., Wainstein, Marina, Shrapnel, Sally and ISARIC Clinical Characterization Group (2022). Validation of UCSD-Mayo Risk Score for Predicting Hospital-Acquired AKI in COVID-19 Patients. Kidney Week, Orlando, FL United States, 3-6 November 2022. Washington, DC United States: American Society of Nephrology. doi: 10.1681/asn.20223311s1334c |
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2022 Journal Article An international observational study to assess the impact of the Omicron variant emergence on the clinical epidemiology of COVID-19 in hospitalised patientsGonçalves, Bronner P, Hall, Matthew, Jassat, Waasila, Balan, Valeria, Murthy, Srinivas, Kartsonaki, Christiana, Semple, Malcolm G, Rojek, Amanda, Baruch, Joaquín, Reyes, Luis Felipe, Dasgupta, Abhishek, Dunning, Jake, Citarella, Barbara Wanjiru, Pritchard, Mark, Martín-Quiros, Alejandro, Sili, Uluhan, Baillie, J Kenneth, Aryal, Diptesh, Arabi, Yaseen, Rashan, Aasiyah, Angheben, Andrea, Caoili, Janice, Carrier, François Martin, Harrison, Ewen M, Gómez-Junyent, Joan, Figueiredo-Mello, Claudia, Douglas, James Joshua, Mat Nor, Mohd Basri, Chow, Yock Ping ... Suen, Jacky Y. (2022). An international observational study to assess the impact of the Omicron variant emergence on the clinical epidemiology of COVID-19 in hospitalised patients. eLife, 11 e80556. doi: 10.7554/eLife.80556 |
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2022 Journal Article Respiratory support in patients with severe COVID-19 in the International Severe Acute Respiratory and Emerging Infection (ISARIC) COVID-19 study: a prospective, multinational, observational studyReyes, Luis Felipe, Murthy, Srinivas, Garcia-Gallo, Esteban, Merson, Laura, Ibáñez-Prada, Elsa D., Rello, Jordi, Fuentes, Yuli V., Martin-Loeches, Ignacio, Bozza, Fernando, Duque, Sara, Taccone, Fabio S., Fowler, Robert A., Kartsonaki, Christiana, Gonçalves, Bronner P., Citarella, Barbara Wanjiru, Aryal, Diptesh, Burhan, Erlina, Cummings, Matthew J., Delmas, Christelle, Diaz, Rodrigo, Figueiredo-Mello, Claudia, Hashmi, Madiha, Panda, Prasan Kumar, Jiménez, Miguel Pedrera, Rincon, Diego Fernando Bautista, Thomson, David, Nichol, Alistair, Marshall, John C., Olliaro, Piero L. ... Suen, Jacky Y. (2022). Respiratory support in patients with severe COVID-19 in the International Severe Acute Respiratory and Emerging Infection (ISARIC) COVID-19 study: a prospective, multinational, observational study. Critical Care, 26 (1) 276. doi: 10.1186/s13054-022-04155-1 |
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2022 Journal Article Neurological manifestations of COVID-19 in adults and childrenCho, Sung Min, White, Nicole, Premraj, Lavienraj, Battaglini, Denise, Fanning, Jonathon, Suen, Jacky, Bassi, Gianluigi Li, Fraser, John, Robba, Chiara, Griffee, Matthew, Singh, Bhagteshwar, Citarella, Barbara Wanjiru, Merson, Laura, Solomon, Tom, Thomson, David, ISARIC Clinical Characterisation Group, Forsyth, Simon and Shrapnel, Sally (2022). Neurological manifestations of COVID-19 in adults and children. Brain, 146 (4), 1648-1661. doi: 10.1093/brain/awac332 |
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2022 Journal Article ISARIC-COVID-19 dataset: A prospective, standardized, global dataset of patients hospitalized with COVID-19ISARIC Clinical Characterization Group, Garcia-Gallo, Esteban, Merson, Laura, Kennon, Kalynn, Kelly, Sadie, Wanjiru Citarella, Barbara, Vidali Fryer, Daniel, Shrapnel, Sally, Lee, James, Duque, Sara, Fuentes, Yuli V., Balan,Valeria, Smith, Sue, Wei, Jia, Gonçalves, Bronner P., Russell, Clark D., Sigfrid, Louise, Dagens, Andrew, Olliaro, Piero L., Baruch, Joaquin, Kartsonaki, Christiana, Dunning, Jake, Rojek, Amanda, Rashan, Aasiyah, Beane, Abi, Murthy, Srinivas, Reyes, Luis Felipe, Forsyth, Simon J. and Suen, Jacky Y. (2022). ISARIC-COVID-19 dataset: A prospective, standardized, global dataset of patients hospitalized with COVID-19. Scientific Data, 9 (1) 454, 454. doi: 10.1038/s41597-022-01534-9 |
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2022 Journal Article Machine learning models for diabetes management in acute care using electronic medical records: a systematic reviewKamel Rahimi, Amir, Canfell, Oliver J., Chan, Wilkin, Sly, Benjamin, Pole, Jason D., Sullivan, Clair and Shrapnel, Sally (2022). Machine learning models for diabetes management in acute care using electronic medical records: a systematic review. International Journal of Medical Informatics, 162 104758, 1-13. doi: 10.1016/j.ijmedinf.2022.104758 |
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2022 Journal Article Early short course of neuromuscular blocking agents in patients with COVID-19 ARDS: a propensity score analysisLi Bassi, Gianluigi, Gibbons, Kristen, Suen, Jacky Y., Dalton, Heidi J., White, Nicole, Corley, Amanda, Shrapnel, Sally, Hinton, Samuel, Forsyth, Simon, Laffey, John G., Fan, Eddy, Fanning, Jonathon P., Panigada, Mauro, Bartlett, Robert, Brodie, Daniel, Burrell, Aidan, Chiumello, Davide, Elhazmi, Alyaa, Esperatti, Mariano, Grasselli, Giacomo, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Marwali, Eva, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Ogino, Mark, Pelosi, Paolo ... The COVID-19 Critical Care Consortium (2022). Early short course of neuromuscular blocking agents in patients with COVID-19 ARDS: a propensity score analysis. Critical Care, 26 (1) 141, 141. doi: 10.1186/s13054-022-03983-5 |
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2022 Journal Article Use of an extended KDIGO definition to diagnose acute kidney injury in patients with COVID-19: a multinational study using the ISARIC–WHO clinical characterisation protocolWainstein, Marina, MacDonald, Samual, Fryer, Daniel, Young, Kyle, Balan, Valeria, Begum, Husna, Burrell, Aidan, Citarella, Barbara Wanjiru, Cobb, J. Perren, Kelly, Sadie, Kennon, Kalynn, Lee, James, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Semple, Malcolm G., Strudwick, Samantha, Webb, Steven A., Rossignol, Patrick, Claure-Del Granado, Rolando, Shrapnel, Sally and the ISARIC Clinical Characterisation Group (2022). Use of an extended KDIGO definition to diagnose acute kidney injury in patients with COVID-19: a multinational study using the ISARIC–WHO clinical characterisation protocol. PLoS Medicine, 19 (4) e1003969, e1003969. doi: 10.1371/journal.pmed.1003969 |
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2022 Journal Article Entropy production and fluctuation theorems in a continuously monitored optical cavity at zero temperatureKewming, Michael J. and Shrapnel, Sally (2022). Entropy production and fluctuation theorems in a continuously monitored optical cavity at zero temperature. Quantum, 6 685, 685. doi: 10.22331/q-2022-04-13-685 |
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2022 Journal Article Toward a learning health care system: a systematic review and evidence-based conceptual framework for implementation of clinical analytics in a digital hospitalLim, Han Chang, Austin, Jodie A., van der Vegt, Anton H., Rahimi, Amir Kamel, Canfell, Oliver J., Mifsud, Jayden, Pole, Jason D., Barras, Michael A., Hodgson, Tobias, Shrapnel, Sally and Sullivan, Clair M. (2022). Toward a learning health care system: a systematic review and evidence-based conceptual framework for implementation of clinical analytics in a digital hospital. Applied Clinical Informatics, 13 (02), 339-354. doi: 10.1055/s-0042-1743243 |
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2022 Journal Article Clinical characteristics, risk factors and outcomes in patients with severe COVID-19 registered in the International Severe Acute Respiratory and Emerging Infection Consortium WHO clinical characterisation protocol: a prospective, multinational, multicentre, observational studyReyes, Luis Felipe, Murthy, Srinivas, Garcia-Gallo, Esteban, Irvine, Mike, Merson, Laura, Martin-Loeches, Ignacio, Rello, Jordi, Taccone, Fabio S, Fowler, Robert A, Docherty, Annemarie B, Kartsonaki, Christiana, Aragao, Irene, Barrett, Peter W, Beane, Abigail, Burrell, Aidan, Cheng, Matthew Pellan, Christian, Michael D, Cidade, Jose Pedro, Citarella, Barbara Wanjiru, Donnelly, Christl A, Fernandes, Susana M, French, Craig, Haniffa, Rashan, Harrison, Ewen M, Ho, Antonia Ying Wai, Joseph, Mark, Khan, Irfan, Kho, Michelle E, Kildal, Anders Benjamin ... Olliaro, Piero L (2022). Clinical characteristics, risk factors and outcomes in patients with severe COVID-19 registered in the International Severe Acute Respiratory and Emerging Infection Consortium WHO clinical characterisation protocol: a prospective, multinational, multicentre, observational study. ERJ Open Research, 8 (1) 00552-2021, 00552-2021. doi: 10.1183/23120541.00552-2021 |
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2022 Conference Publication Explainable deep learning for medical imaging models through class specific semantic dictionariesLayton, Harrison, Shrapnel, Sally and Bialkowski, Alina (2022). Explainable deep learning for medical imaging models through class specific semantic dictionaries. International Conference on Digital Image Computing: Techniques and Applications (DICTA), Sydney, NSW, Australia, 30 November 2022 - 02 December 2022. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/DICTA56598.2022.10034639 |
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2021 Journal Article The value of open-source clinical science in pandemic response: lessons from ISARICAbbas, Ali, Abdukahil, Sheryl Ann, Abdulkadir, Nurul Najmee, Abe, Ryuzo, Abel, Laurent, Absil, Lara, Acharya, Subhash, Acker, Andrew, Adachi, Shingo, Adam, Elisabeth, Adrião, Diana, Ageel, Saleh Al, Ahmed, Shakeel, Ain, Quratul, Ainscough, Kate, Aisa, Tharwat, Ait Hssain, Ali, Ait Tamlihat, Younes, Akimoto, Takako, Akmal, Ernita, Al Qasim, Eman, Alalqam, Razi, Alam, Tanvir, Al-dabbous, Tala, Alegesan, Senthilkumar, Alegre, Cynthia, Alessi, Marta, Alex, Beatrice, Alexandre, Kévin ... ISARIC Clinical Characterisation Group (2021). The value of open-source clinical science in pandemic response: lessons from ISARIC. The Lancet Infectious Diseases, 21 (12), 1623-1624. doi: 10.1016/S1473-3099(21)00565-X |
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2021 Journal Article Ten months of temporal variation in the clinical journey of hospitalised patients with COVID-19: An observational cohortISARIC Clinical Characterisation Group, Hall, Matthew D., Baruch, Joaquín, Carson, Gail, Citarella, Barbara Wanjiru, Dagens, Andrew, Dankwa, Emmanuelle A., Donnelly, Christl A., Dunning, Jake, Escher, Martina, Kartsonaki, Christiana, Merson, Laura, Pritchard, Mark, Wei, Jia, Horby, Peter W., Rojek, Amanda, Olliaro, Piero L., Li Bassi, Gianluigi, Shrapnel, Sally, Suen, Jacky and Forsyth, Simon J. (2021). Ten months of temporal variation in the clinical journey of hospitalised patients with COVID-19: An observational cohort. eLife, 10 e70970, 1-30. doi: 10.7554/elife.70970 |
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2021 Journal Article Assessment of 28-day in-hospital mortality in mechanically ventilated patients with coronavirus disease 2019: an international cohort studyLi Bassi, Gianluigi, Suen, Jacky Y., White, Nicole, Dalton, Heidi J., Fanning, Jonathon, Corley, Amanda, Shrapnel, Sally, Hinton, Samuel, Forsyth, Simon, Parsons, Rex, Laffey, John G., Fan, Eddy, Bartlett, Robert, Brodie, Daniel, Burrell, Aidan, Chiumello, Davide, Elhazmi, Alyaa, Grasselli, Giacomo, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Marwali, Eva, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Panigada, Mauro, Pelosi, Paolo, Torres, Antoni, Ng, Pauline Yeung ... Obonyo, Nchafatso (2021). Assessment of 28-day in-hospital mortality in mechanically ventilated patients with coronavirus disease 2019: an international cohort study. Critical Care Explorations, 3 (11) e0567, e0567. doi: 10.1097/cce.0000000000000567 |
