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2022

Journal Article

Neurological manifestations of COVID-19 in adults and children

Cho, Sung Min, White, Nicole, Premraj, Lavienraj, Battaglini, Denise, Fanning, Jonathon, Suen, Jacky, Bassi, Gianluigi Li, Fraser, John, Robba, Chiara, Griffee, Matthew, Singh, Bhagteshwar, Citarella, Barbara Wanjiru, Merson, Laura, Solomon, Tom, Thomson, David, ISARIC Clinical Characterisation Group, Forsyth, Simon and Shrapnel, Sally (2022). Neurological manifestations of COVID-19 in adults and children. Brain, 146 (4), 1648-1661. doi: 10.1093/brain/awac332

Neurological manifestations of COVID-19 in adults and children

2022

Journal Article

ISARIC-COVID-19 dataset: A prospective, standardized, global dataset of patients hospitalized with COVID-19

ISARIC Clinical Characterization Group, Garcia-Gallo, Esteban, Merson, Laura, Kennon, Kalynn, Kelly, Sadie, Wanjiru Citarella, Barbara, Vidali Fryer, Daniel, Shrapnel, Sally, Lee, James, Duque, Sara, Fuentes, Yuli V., Balan,Valeria, Smith, Sue, Wei, Jia, Gonçalves, Bronner P., Russell, Clark D., Sigfrid, Louise, Dagens, Andrew, Olliaro, Piero L., Baruch, Joaquin, Kartsonaki, Christiana, Dunning, Jake, Rojek, Amanda, Rashan, Aasiyah, Beane, Abi, Murthy, Srinivas, Reyes, Luis Felipe, Forsyth, Simon J. and Suen, Jacky Y. (2022). ISARIC-COVID-19 dataset: A prospective, standardized, global dataset of patients hospitalized with COVID-19. Scientific Data, 9 (1) 454, 454. doi: 10.1038/s41597-022-01534-9

ISARIC-COVID-19 dataset: A prospective, standardized, global dataset of patients hospitalized with COVID-19

2022

Journal Article

Machine learning models for diabetes management in acute care using electronic medical records: a systematic review

Kamel Rahimi, Amir, Canfell, Oliver J., Chan, Wilkin, Sly, Benjamin, Pole, Jason D., Sullivan, Clair and Shrapnel, Sally (2022). Machine learning models for diabetes management in acute care using electronic medical records: a systematic review. International Journal of Medical Informatics, 162 104758, 1-13. doi: 10.1016/j.ijmedinf.2022.104758

Machine learning models for diabetes management in acute care using electronic medical records: a systematic review

2022

Journal Article

Early short course of neuromuscular blocking agents in patients with COVID-19 ARDS: a propensity score analysis

Li Bassi, Gianluigi, Gibbons, Kristen, Suen, Jacky Y., Dalton, Heidi J., White, Nicole, Corley, Amanda, Shrapnel, Sally, Hinton, Samuel, Forsyth, Simon, Laffey, John G., Fan, Eddy, Fanning, Jonathon P., Panigada, Mauro, Bartlett, Robert, Brodie, Daniel, Burrell, Aidan, Chiumello, Davide, Elhazmi, Alyaa, Esperatti, Mariano, Grasselli, Giacomo, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Marwali, Eva, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Ogino, Mark, Pelosi, Paolo ... The COVID-19 Critical Care Consortium (2022). Early short course of neuromuscular blocking agents in patients with COVID-19 ARDS: a propensity score analysis. Critical Care, 26 (1) 141, 141. doi: 10.1186/s13054-022-03983-5

Early short course of neuromuscular blocking agents in patients with COVID-19 ARDS: a propensity score analysis

2022

Journal Article

Use of an extended KDIGO definition to diagnose acute kidney injury in patients with COVID-19: a multinational study using the ISARIC–WHO clinical characterisation protocol

Wainstein, Marina, MacDonald, Samual, Fryer, Daniel, Young, Kyle, Balan, Valeria, Begum, Husna, Burrell, Aidan, Citarella, Barbara Wanjiru, Cobb, J. Perren, Kelly, Sadie, Kennon, Kalynn, Lee, James, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Semple, Malcolm G., Strudwick, Samantha, Webb, Steven A., Rossignol, Patrick, Claure-Del Granado, Rolando, Shrapnel, Sally and the ISARIC Clinical Characterisation Group (2022). Use of an extended KDIGO definition to diagnose acute kidney injury in patients with COVID-19: a multinational study using the ISARIC–WHO clinical characterisation protocol. PLoS Medicine, 19 (4) e1003969, e1003969. doi: 10.1371/journal.pmed.1003969

Use of an extended KDIGO definition to diagnose acute kidney injury in patients with COVID-19: a multinational study using the ISARIC–WHO clinical characterisation protocol

2022

Journal Article

Entropy production and fluctuation theorems in a continuously monitored optical cavity at zero temperature

Kewming, Michael J. and Shrapnel, Sally (2022). Entropy production and fluctuation theorems in a continuously monitored optical cavity at zero temperature. Quantum, 6 685, 685. doi: 10.22331/q-2022-04-13-685

Entropy production and fluctuation theorems in a continuously monitored optical cavity at zero temperature

2022

Journal Article

Toward a learning health care system: a systematic review and evidence-based conceptual framework for implementation of clinical analytics in a digital hospital

Lim, Han Chang, Austin, Jodie A., van der Vegt, Anton H., Rahimi, Amir Kamel, Canfell, Oliver J., Mifsud, Jayden, Pole, Jason D., Barras, Michael A., Hodgson, Tobias, Shrapnel, Sally and Sullivan, Clair M. (2022). Toward a learning health care system: a systematic review and evidence-based conceptual framework for implementation of clinical analytics in a digital hospital. Applied Clinical Informatics, 13 (02), 339-354. doi: 10.1055/s-0042-1743243

Toward a learning health care system: a systematic review and evidence-based conceptual framework for implementation of clinical analytics in a digital hospital

2022

Journal Article

Clinical characteristics, risk factors and outcomes in patients with severe COVID-19 registered in the International Severe Acute Respiratory and Emerging Infection Consortium WHO clinical characterisation protocol: a prospective, multinational, multicentre, observational study

Reyes, Luis Felipe, Murthy, Srinivas, Garcia-Gallo, Esteban, Irvine, Mike, Merson, Laura, Martin-Loeches, Ignacio, Rello, Jordi, Taccone, Fabio S, Fowler, Robert A, Docherty, Annemarie B, Kartsonaki, Christiana, Aragao, Irene, Barrett, Peter W, Beane, Abigail, Burrell, Aidan, Cheng, Matthew Pellan, Christian, Michael D, Cidade, Jose Pedro, Citarella, Barbara Wanjiru, Donnelly, Christl A, Fernandes, Susana M, French, Craig, Haniffa, Rashan, Harrison, Ewen M, Ho, Antonia Ying Wai, Joseph, Mark, Khan, Irfan, Kho, Michelle E, Kildal, Anders Benjamin ... Olliaro, Piero L (2022). Clinical characteristics, risk factors and outcomes in patients with severe COVID-19 registered in the International Severe Acute Respiratory and Emerging Infection Consortium WHO clinical characterisation protocol: a prospective, multinational, multicentre, observational study. ERJ Open Research, 8 (1) 00552-2021, 00552-2021. doi: 10.1183/23120541.00552-2021

Clinical characteristics, risk factors and outcomes in patients with severe COVID-19 registered in the International Severe Acute Respiratory and Emerging Infection Consortium WHO clinical characterisation protocol: a prospective, multinational, multicentre, observational study

2022

Conference Publication

Explainable deep learning for medical imaging models through class specific semantic dictionaries

Layton, Harrison, Shrapnel, Sally and Bialkowski, Alina (2022). Explainable deep learning for medical imaging models through class specific semantic dictionaries. International Conference on Digital Image Computing: Techniques and Applications (DICTA), Sydney, NSW, Australia, 30 November 2022 - 02 December 2022. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/DICTA56598.2022.10034639

Explainable deep learning for medical imaging models through class specific semantic dictionaries

2021

Journal Article

The value of open-source clinical science in pandemic response: lessons from ISARIC

Abbas, Ali, Abdukahil, Sheryl Ann, Abdulkadir, Nurul Najmee, Abe, Ryuzo, Abel, Laurent, Absil, Lara, Acharya, Subhash, Acker, Andrew, Adachi, Shingo, Adam, Elisabeth, Adrião, Diana, Ageel, Saleh Al, Ahmed, Shakeel, Ain, Quratul, Ainscough, Kate, Aisa, Tharwat, Ait Hssain, Ali, Ait Tamlihat, Younes, Akimoto, Takako, Akmal, Ernita, Al Qasim, Eman, Alalqam, Razi, Alam, Tanvir, Al-dabbous, Tala, Alegesan, Senthilkumar, Alegre, Cynthia, Alessi, Marta, Alex, Beatrice, Alexandre, Kévin ... ISARIC Clinical Characterisation Group (2021). The value of open-source clinical science in pandemic response: lessons from ISARIC. The Lancet Infectious Diseases, 21 (12), 1623-1624. doi: 10.1016/S1473-3099(21)00565-X

The value of open-source clinical science in pandemic response: lessons from ISARIC

2021

Journal Article

Ten months of temporal variation in the clinical journey of hospitalised patients with COVID-19: An observational cohort

ISARIC Clinical Characterisation Group, Hall, Matthew D., Baruch, Joaquín, Carson, Gail, Citarella, Barbara Wanjiru, Dagens, Andrew, Dankwa, Emmanuelle A., Donnelly, Christl A., Dunning, Jake, Escher, Martina, Kartsonaki, Christiana, Merson, Laura, Pritchard, Mark, Wei, Jia, Horby, Peter W., Rojek, Amanda, Olliaro, Piero L., Li Bassi, Gianluigi, Shrapnel, Sally, Suen, Jacky and Forsyth, Simon J. (2021). Ten months of temporal variation in the clinical journey of hospitalised patients with COVID-19: An observational cohort. eLife, 10 e70970, 1-30. doi: 10.7554/elife.70970

Ten months of temporal variation in the clinical journey of hospitalised patients with COVID-19: An observational cohort

2021

Journal Article

Assessment of 28-day in-hospital mortality in mechanically ventilated patients with coronavirus disease 2019: an international cohort study

Li Bassi, Gianluigi, Suen, Jacky Y., White, Nicole, Dalton, Heidi J., Fanning, Jonathon, Corley, Amanda, Shrapnel, Sally, Hinton, Samuel, Forsyth, Simon, Parsons, Rex, Laffey, John G., Fan, Eddy, Bartlett, Robert, Brodie, Daniel, Burrell, Aidan, Chiumello, Davide, Elhazmi, Alyaa, Grasselli, Giacomo, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Marwali, Eva, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Panigada, Mauro, Pelosi, Paolo, Torres, Antoni, Ng, Pauline Yeung ... Obonyo, Nchafatso (2021). Assessment of 28-day in-hospital mortality in mechanically ventilated patients with coronavirus disease 2019: an international cohort study. Critical Care Explorations, 3 (11) e0567, e0567. doi: 10.1097/cce.0000000000000567

Assessment of 28-day in-hospital mortality in mechanically ventilated patients with coronavirus disease 2019: an international cohort study

2021

Journal Article

Experimental characterization of a non-Markovian quantum process

Goswami, K., Giarmatzi, C., Monterola, C., Shrapnel, S., Romero, J. and Costa, F. (2021). Experimental characterization of a non-Markovian quantum process. Physical Review A, 104 (2) 022432. doi: 10.1103/physreva.104.022432

Experimental characterization of a non-Markovian quantum process

2021

Journal Article

COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study

ISARIC Clinical Characterisation Group, Li Bassi, Gianluigi, Scarsbrook, Joshua, Shrapnel, Sally, Suen, Jacky and Forsyth, Simon J. (2021). COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study. Infection, 49 (5), 889-905. doi: 10.1007/s15010-021-01599-5

COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study

2021

Journal Article

An appraisal of respiratory system compliance in mechanically ventilated covid-19 patients

Li Bassi, Gianluigi, Suen, Jacky Y, Dalton, Heidi J, White, Nicole, Shrapnel, Sally, Fanning, Jonathon P, Liquet, Benoit, Hinton, Samuel, Vuorinen, Aapeli, Booth, Gareth, Millar, Jonathan E, Forsyth, Simon, Panigada, Mauro, Laffey, John, Brodie, Daniel, Fan, Eddy, Torres, Antoni, Chiumello, Davide, Corley, Amanda, Elhazmi, Alyaa, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Murthy, Srinivas, Nichol, Alistair, Ng, Pauline Yeung, Ogino, Mark, Pesenti, Antonio, Trieu, Huynh Trung ... Obonyo, Gikenyi N. (2021). An appraisal of respiratory system compliance in mechanically ventilated covid-19 patients. Critical Care, 25 (1) 199, 1-22. doi: 10.1186/s13054-021-03518-4

An appraisal of respiratory system compliance in mechanically ventilated covid-19 patients

2021

Journal Article

International Society of Nephrology Global Kidney Health Atlas: structures, organization, and services for the management of kidney failure in Latin America

Wainstein, Marina, Bello, Aminu K., Jha, Vivekanand, Harris, David C.H., Levin, Adeera, Gonzalez-Bedat, Maria C., Rosa-Diez, Guillermo J., Ferreiro Fuentes, Alejandro, Sola, Laura, Pecoits-Filho, Roberto, Claure-Del Granado, Rolando, Madero, Magdalena, Osman, Mohamed A., Saad, Syed, Zaidi, Deenaz, Lunney, Meaghan, Ye, Feng, Katz, Ivor J., Khan, Maryam, Shrapnel, Sally, Tonelli, Marcello, Okpechi, Ikechi G. and Johnson, David W. (2021). International Society of Nephrology Global Kidney Health Atlas: structures, organization, and services for the management of kidney failure in Latin America. Kidney International Supplements, 11 (2), e35-e46. doi: 10.1016/j.kisu.2021.01.005

International Society of Nephrology Global Kidney Health Atlas: structures, organization, and services for the management of kidney failure in Latin America

2021

Journal Article

Designing a physical quantum agent

Kewming, M. J., Shrapnel, S. and Milburn, G. J. (2021). Designing a physical quantum agent. Physical Review A, 103 (3) 032411, 1-7. doi: 10.1103/physreva.103.032411

Designing a physical quantum agent

2021

Journal Article

Intensive care digital health response to emerging infectious disease outbreaks such as COVID-19

Kirrane, Marianne D., Shrapnel, Sally, Ramanan, Mahesh, Clement, Pierre, Fraser, John F., Laupland, Kevin B., Sullivan, Clair M. and Shekar, Kiran (2021). Intensive care digital health response to emerging infectious disease outbreaks such as COVID-19. Anaesthesia and Intensive Care, 49 (2), 0310057X2097577-111. doi: 10.1177/0310057x20975777

Intensive care digital health response to emerging infectious disease outbreaks such as COVID-19

2020

Journal Article

Design and rationale of the COVID-19 Critical Care Consortium international, multicentre, observational study

Bassi, Gianluigi Li, Suen, Jacky, Barnett, Adrian Gerard, Corley, Amanda, Millar, Jonathan, Fanning, Jonathon, Lye, India, Colombo, Sebastiano, Wildi, Karin, Livingstone, Samantha, Abbate, Gabriella, Hinton, Samuel, Liquet, Benoit, Shrapnel, Sally, Dalton, Heidi and Fraser, John F. (2020). Design and rationale of the COVID-19 Critical Care Consortium international, multicentre, observational study. BMJ Open, 10 (12) e041417, 1-6. doi: 10.1136/bmjopen-2020-041417

Design and rationale of the COVID-19 Critical Care Consortium international, multicentre, observational study

2020

Journal Article

Hiding ignorance using high dimensions

Kewming, M. J., Shrapnel, S., White, A. G. and Romero, J. (2020). Hiding ignorance using high dimensions. Physical Review Letters, 124 (25) 250401, 250401. doi: 10.1103/physrevlett.124.250401

Hiding ignorance using high dimensions