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2023 Journal Article Extending the breeder’s equation to take aim at the target population of environmentsCooper, Mark, Powell, Owen, Gho Brito, Carla, Tang, Tom and Messina, Carlos (2023). Extending the breeder’s equation to take aim at the target population of environments. Frontiers in Plant Science, 14 1129591, 1-10. doi: 10.3389/fpls.2023.1129591 |
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2023 Journal Article Transgene by germplasm interactions can impact transgene evaluationLinares, Julien F., Coles, Nathan D., Mo, Hua, Habben, Jeff E., Humbert, Sabrina, Messina, Carlos, Tang, Tom, Cooper, Mark, Gho, Carla, Carrasco, Ricardo, Carter, Javier, Flounders, Jillian Wicher and Brummer, E Charles (2023). Transgene by germplasm interactions can impact transgene evaluation. Crop Science, 63 (4), 1988-1997. doi: 10.1002/csc2.20939 |
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2023 Journal Article Retrospective study in US commercial sorghum breeding: I. Genetic gain in relation to relative maturityMayor, L., Demarco, P., Lira, S., Fang, Y., Abadie, T., Gambin, B., Hammer, G., Ciampitti, I., Cooper, M. and Messina, C. (2023). Retrospective study in US commercial sorghum breeding: I. Genetic gain in relation to relative maturity. Crop Science, 63 (2), 501-510. doi: 10.1002/csc2.20897 |
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2023 Journal Article Breeding crops for drought-affected environments and improved climate resilienceCooper, Mark and Messina, Carlos D. (2023). Breeding crops for drought-affected environments and improved climate resilience. The Plant Cell, 35 (1), 162-186. doi: 10.1093/plcell/koac321 |
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2022 Journal Article Global wheat production could benefit from closing the genetic yield gapSenapati, Nimai, Semenov, Mikhail A., Halford, Nigel G., Hawkesford, Malcolm J., Asseng, Senthold, Cooper, Mark, Ewert, Frank, van Ittersum, Martin K., Martre, Pierre, Olesen, Jørgen E., Reynolds, Matthew, Rötter, Reimund P. and Webber, Heidi (2022). Global wheat production could benefit from closing the genetic yield gap. Nature Food, 3 (7), 532-541. doi: 10.1038/s43016-022-00540-9 |
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2022 Journal Article Radiation use efficiency increased over a century of maize (Zea mays L.) breeding in the US corn beltMessina, Carlos D., Rotundo, Jose, Hammer, Graeme L., Gho, Carla, Reyes, Andres, Fang, Yinan, van Oosterom, Erik, Borras, Lucas and Cooper, Mark (2022). Radiation use efficiency increased over a century of maize (Zea mays L.) breeding in the US corn belt. Journal of Experimental Botany, 73 (16), 5503-5513. doi: 10.1093/jxb/erac212 |
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2022 Journal Article Sustained improvement in tolerance to water deficit accompanies maize yield increase in temperate environmentsMessina, Carlos, Ciampitti, Ignacio Antonio, Berning, Dan, Bubeck, Dave, Hammer, Graeme and Cooper, Mark (2022). Sustained improvement in tolerance to water deficit accompanies maize yield increase in temperate environments. Crop Science, 62 (6), 1-13. doi: 10.1002/csc2.20781 |
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2022 Journal Article Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plantsPowell, Owen M., Barbier, Francois, Voss-Fels, Kai P., Beveridge, Christine and Cooper, Mark (2022). Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plants. in silico Plants, 4 (1) diac006, 1-9. doi: 10.1093/insilicoplants/diac006 |
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2022 Journal Article Physiological trait networks enhance understanding of crop growth and water use in contrasting environmentsGleason, Sean M., Barnard, Dave M., Green, Timothy R., Mackay, D. Scott, Wang, Diane R., Ainsworth, Elizabeth A., Altenhofen, Jon, Brodribb, Timothy J., Cochard, Hervé, Comas, Louise H., Cooper, Mark, Creek, Danielle, DeJonge, Kendall C., Delzon, Sylvain, Fritschi, Felix B., Hammer, Graeme, Hunter, Cameron, Lombardozzi, Danica, Messina, Carlos D., Ocheltree, Troy, Maxwell Stevens, Bo, Stewart, Jared J., Vadez, Vincent, Wenz, Joshua, Wright, Ian J., Yemoto, Kevin and Zhang, Huihui (2022). Physiological trait networks enhance understanding of crop growth and water use in contrasting environments. Plant, Cell & Environment, 45 (9), 2554-2572. doi: 10.1111/pce.14382 |
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2022 Journal Article Can we harness digital technologies and physiology to hasten genetic gain in United States maize breeding?Diepenbrock, Christine, Tang, Tom, Jines, Michael, Technow, Frank, Lira, Sara, Podlich, Dean, Cooper, Mark and Messina, Carlos (2022). Can we harness digital technologies and physiology to hasten genetic gain in United States maize breeding?. Plant Physiology, 188 (2), 1141-1157. doi: 10.1093/plphys/kiab527 |
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2022 Journal Article Crop improvement for circular bioeconomy systemsMessina, Carlos D., van Eeuwijk, Fred, Tang, Tom, Truong, Sandra K., McCormick, Ryan F., Technow, Frank, Powell, Owen, Mayor, Laura, Gutterson, Neal, Jones, James W., Hammer, Graeme and Cooper, Mark (2022). Crop improvement for circular bioeconomy systems. Journal of the ASABE, 65 (3), 491-504. doi: 10.13031/ja.14912 |
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2021 Journal Article Can we harness “enviromics” to accelerate crop improvement by integrating breeding and agronomy?Cooper, Mark and Messina, Carlos D. (2021). Can we harness “enviromics” to accelerate crop improvement by integrating breeding and agronomy?. Frontiers in Plant Science, 12 735143, 735143. doi: 10.3389/fpls.2021.735143 |
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2021 Journal Article Predicting phenotypes from genetic, environment, management, and historical data using CNNsWashburn, Jacob D., Cimen, Emre, Ramstein, Guillaume, Reeves, Timothy, O'Briant, Patrick, McLean, Greg, Cooper, Mark, Hammer, Graeme and Buckler, Edward S. (2021). Predicting phenotypes from genetic, environment, management, and historical data using CNNs. Theoretical and Applied Genetics, 134 (12), 3997-4011. doi: 10.1007/s00122-021-03943-7 |
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2021 Journal Article Plant production in water-limited environmentsHammer, Graeme L., Cooper, Mark and Reynolds, Matthew P. (2021). Plant production in water-limited environments. Journal of Experimental Botany, 72 (14), 5097-5101. doi: 10.1093/jxb/erab273 |
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2021 Journal Article Perspectives on applications of hierarchical gene-to-phenotype (G2P) maps to capture non-stationary effects of alleles in genomic predictionPowell, Owen M., Voss-Fels, Kai P., Jordan, David R., Hammer, Graeme and Cooper, Mark (2021). Perspectives on applications of hierarchical gene-to-phenotype (G2P) maps to capture non-stationary effects of alleles in genomic prediction. Frontiers in Plant Science, 12 663565, 663565. doi: 10.3389/fpls.2021.663565/full |
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2021 Journal Article Addressing research bottlenecks to crop productivityReynolds, Matthew, Atkin, Owen K., Bennett, Malcolm, Cooper, Mark, Dodd, Ian C., Foulkes, M. John, Frohberg, Claus, Hammer, Graeme, Henderson, Ian R., Huang, Bingru, Korzun, Viktor, McCouch, Susan R., Messina, Carlos D., Pogson, Barry J., Slafer, Gustavo A., Taylor, Nicolas L. and Wittich, Peter E. (2021). Addressing research bottlenecks to crop productivity. Trends in Plant Science, 26 (6), 607-630. doi: 10.1016/j.tplants.2021.03.011 |
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2021 Journal Article Reproductive resilience but not root architecture underpins yield improvement under drought in maize (Zea mays L.)Messina, Carlos, McDonald, Dan, Poffenbarger, Hanna, Clark, Randy, Salinas, Andrea, Fang, Yinan, Gho, Carla, Tang, Tom, Graham, Geoff, Hammer, Graeme and Cooper, Mark (2021). Reproductive resilience but not root architecture underpins yield improvement under drought in maize (Zea mays L.). Journal of Experimental Botany, 72 (14), 5235-5245. doi: 10.1093/jxb/erab231 |
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2021 Journal Article In pursuit of a better world: crop improvement and the CGIARKholova, J, Urban, M O, Cock, J, Arcos, J, Arnaud, E, Aytekin, D, Azevedo, V, Barnes, A P, Ceccarelli, S, Chavarriaga, P, Cobb, J, Connor, D, Cooper, M, Craufurd, P, Debouck, D, Fungo, R, Grando, S, Hammer, G L, Jara, C, Messina, C, Mosquera, G, Nchanji, E, Ng, E, Prager, S, Sankaran, S, Selvaraj, M, Tardieu, F, Thornton, P, Valdes, S ... Xu, Yunbi (2021). In pursuit of a better world: crop improvement and the CGIAR. Journal of Experimental Botany, 72 (14), 5158-5179. doi: 10.1093/jxb/erab226 |
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2021 Journal Article Back to the future: implications of genetic complexity for the structure of hybrid breeding programsTechnow, Frank, Podlich, Dean and Cooper, Mark (2021). Back to the future: implications of genetic complexity for the structure of hybrid breeding programs. G3: Genes, Genomes, Genetics, 11 (7) jkab153. doi: 10.1093/g3journal/jkab153 |
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2021 Journal Article Tackling G × E × M interactions to close on-farm yield-gaps: creating novel pathways for crop improvement by predicting contributions of genetics and management to crop productivityCooper, Mark, Voss-Fels, Kai P., Messina, Carlos D., Tang, Tom and Hammer, Graeme L. (2021). Tackling G × E × M interactions to close on-farm yield-gaps: creating novel pathways for crop improvement by predicting contributions of genetics and management to crop productivity. Theoretical and Applied Genetics, 134 (6), 1625-1644. doi: 10.1007/s00122-021-03812-3 |
