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2025

Journal Article

Analysis of 30 chromosome-level Drosophila genome assemblies reveals dynamic evolution of centromeric satellite repeats

Gebert, Daniel, Hay, Amir D., Hoang, Jennifer P., Gibbon, Adam E., Henderson, Ian R. and Teixeira, Felipe Karam (2025). Analysis of 30 chromosome-level Drosophila genome assemblies reveals dynamic evolution of centromeric satellite repeats. Genome Biology, 26 (1) 63, 1-26. doi: 10.1186/s13059-025-03527-4

Analysis of 30 chromosome-level Drosophila genome assemblies reveals dynamic evolution of centromeric satellite repeats

2025

Journal Article

Histone variant H2A.W7 represses meiotic crossover formation in Arabidopsis heterochromatin

Kuo, Pallas, Tock, Andrew J., Liu, Xuexia, Topp, Stephanie D., Zhong, Zhenhui, Henderson, Ian R. and Lambing, Christophe (2025). Histone variant H2A.W7 represses meiotic crossover formation in Arabidopsis heterochromatin. Proceedings of the National Academy of Sciences of the United States of America, 122 (22) e2414166122, 22. doi: 10.1073/pnas.2414166122

Histone variant H2A.W7 represses meiotic crossover formation in Arabidopsis heterochromatin

2025

Journal Article

Centrophilic Retrotransposons of Plant Genomes

Bousios, Alexandros, Kakutani, Tetsuji and Henderson, Ian R. (2025). Centrophilic Retrotransposons of Plant Genomes. Annual Review of Plant Biology, 76 (1), 579-604. doi: 10.1146/annurev-arplant-083123-082220

Centrophilic Retrotransposons of Plant Genomes

2025

Journal Article

Genome-wide high-throughput transposon mutagenesis unveils key factors for acidic pH adaptation of Corynebacterium diphtheriae

Antunes, Camila Azevedo, Goodall, Emily C. A., Henderson, Ian R., Wild, David, Mehltretter, Alexander, Ott, Philipp, Hölzl, Markus, Ott, Lisa, Seidel, Gerald and Burkovski, Andreas (2025). Genome-wide high-throughput transposon mutagenesis unveils key factors for acidic pH adaptation of Corynebacterium diphtheriae. Microbiology, 171 (4) 001554. doi: 10.1099/mic.0.001554

Genome-wide high-throughput transposon mutagenesis unveils key factors for acidic pH adaptation of Corynebacterium diphtheriae

2025

Journal Article

Discrete and conserved inflammatory signatures drive thrombosis in different organs after Salmonella infection

Perez-Toledo, Marisol, Beristain-Covarrubias, Nonantzin, Pillaye, Jamie, Persaud, Ruby R., Marcial-Juarez, Edith, Jossi, Sian E., Hitchcock, Jessica R., Alshayea, Areej, Channell, William M., Wiersma, Niek T. J., Lamerton, Rachel E., Kavanagh, Dean P., Carestia, Agostina, Horsnell, William G., Henderson, Ian R., Mackman, Nigel, Clark, Andrew R., Jenne, Craig N., Rayes, Julie, Watson, Steve P. and Cunningham, Adam F. (2025). Discrete and conserved inflammatory signatures drive thrombosis in different organs after Salmonella infection. Nature Communications, 16 (1) 2356, 1-16. doi: 10.1038/s41467-025-57466-6

Discrete and conserved inflammatory signatures drive thrombosis in different organs after Salmonella infection

2025

Journal Article

The Gastric Microbiota Invade the Lamina Propria in <i>Helicobacter pylori</i>-Associated Gastritis and Precancer

Giddings, Harriet J., Teodosio, Ana, Jones, Jordanne, Mcmurray, Jack L., Hunter, Kelly, Alame, Riad, Gardiner, Isaac, Abdawn, Zainab, Butterworth, William, Henderson, Ian R., Cole, Jeffrey A., Shannon-Lowe, Claire D. and Rossiter-Pearson, Amanda E. (2025). The Gastric Microbiota Invade the Lamina Propria in Helicobacter pylori-Associated Gastritis and Precancer. Helicobacter, 30 (1) e70016, e70016. doi: 10.1111/hel.70016

The Gastric Microbiota Invade the Lamina Propria in <i>Helicobacter pylori</i>-Associated Gastritis and Precancer

2025

Journal Article

Centrophilic retrotransposon integration via CENH3 chromatin in Arabidopsis

Tsukahara, Sayuri, Bousios, Alexandros, Perez-Roman, Estela, Yamaguchi, Sota, Leduque, Basile, Nakano, Aimi, Naish, Matthew, Osakabe, Akihisa, Toyoda, Atsushi, Ito, Hidetaka, Edera, Alejandro, Tominaga, Sayaka, Juliarni, , Kato, Kae, Oda, Shoko, Inagaki, Soichi, Lorković, Zdravko, Nagaki, Kiyotaka, Berger, Frédéric, Kawabe, Akira, Quadrana, Leandro, Henderson, Ian and Kakutani, Tetsuji (2025). Centrophilic retrotransposon integration via CENH3 chromatin in Arabidopsis. Nature, 637 (8046) 1, 744-748. doi: 10.1038/s41586-024-08319-7

Centrophilic retrotransposon integration via CENH3 chromatin in Arabidopsis

2025

Journal Article

COmapper: high-resolution mapping of meiotic crossovers by long-read sequencing in Arabidopsis

Byun, Dohwan, Son, Namil, Kim, Heejin, Kim, Jaeil, Park, Jihye, Park, Sang-jun, Kim, Hyein, Kim, Jaebeom, Kim, Juhyun, Lee, Seula, Hyun, Youbong, Ziolkowski, Piotr A., Henderson, Ian R. and Choi, Kyuha (2025). COmapper: high-resolution mapping of meiotic crossovers by long-read sequencing in Arabidopsis. New Phytologist. doi: 10.1111/nph.70304

COmapper: high-resolution mapping of meiotic crossovers by long-read sequencing in Arabidopsis

2024

Journal Article

Distinct neutralising and complement-fixing antibody responses can be induced to the same antigen in haemodialysis patients after immunisation with different vaccine platforms

Wall, Nadezhda, Lamerton, Rachel, Ashford, Fiona, Perez-Toledo, Marisol, Jasiulewicz, Aleksandra, Banham, Gemma D., Newby, Maddy L., Faustini, Sian E., Richter, Alex G., Selvaskandan, Haresh, Billany, Roseanne E., Adenwalla, Sherna F., Henderson, Ian R., Crispin, Max, Graham-Brown, Matthew, Harper, Lorraine and Cunningham, Adam F. (2024). Distinct neutralising and complement-fixing antibody responses can be induced to the same antigen in haemodialysis patients after immunisation with different vaccine platforms. Vaccines, 13 (1) 7, 1-17. doi: 10.3390/vaccines13010007

Distinct neutralising and complement-fixing antibody responses can be induced to the same antigen in haemodialysis patients after immunisation with different vaccine platforms

2024

Journal Article

Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Fernandes, Joiselle B., Naish, Matthew, Lian, Qichao, Burns, Robin, Tock, Andrew J., Rabanal, Fernando A., Wlodzimierz, Piotr, Habring, Anette, Nicholas, Robert E., Weigel, Detlef, Mercier, Raphael and Henderson, Ian R. (2024). Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis. Genome Biology, 25 (1) 30. doi: 10.1186/s13059-024-03163-4

Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

2024

Journal Article

A review of antibacterial candidates with new modes of action

Butler, Mark S., Vollmer, Waldemar, Goodall, Emily C. A., Capon, Robert J., Henderson, Ian R. and Blaskovich, Mark A. T. (2024). A review of antibacterial candidates with new modes of action. ACS Infectious Diseases, 10 (10), 3440-3474. doi: 10.1021/acsinfecdis.4c00218

A review of antibacterial candidates with new modes of action

2024

Journal Article

Genome-wide fitness analysis of Salmonella enterica reveals aroA mutants are attenuated due to iron restriction in vitro

Rooke, Jessica L., Goodall, Emily C. A., Pullela, Karthik, Da Costa, Rochelle, Martinelli, Nicole, Smith, Chelsie, Mora, Maria, Cunningham, Adam F. and Henderson, Ian R. (2024). Genome-wide fitness analysis of Salmonella enterica reveals aroA mutants are attenuated due to iron restriction in vitro. mBio, 15 (10), 1-17. doi: 10.1128/mbio.03319-23

Genome-wide fitness analysis of Salmonella enterica reveals aroA mutants are attenuated due to iron restriction in vitro

2024

Journal Article

Type 5 secretion system antigens as vaccines against Gram-negative bacterial infections

Da Costa, Rochelle M., Rooke, Jessica L., Wells, Timothy J., Cunningham, Adam F. and Henderson, Ian R. (2024). Type 5 secretion system antigens as vaccines against Gram-negative bacterial infections. npj Vaccines, 9 (1) 159, 159. doi: 10.1038/s41541-024-00953-6

Type 5 secretion system antigens as vaccines against Gram-negative bacterial infections

2024

Journal Article

Transposon mutagenesis screen in Klebsiella pneumoniae identifies genetic determinants required for growth in human urine and serum

Gray, Jessica, Torres, Von Vergel L., Goodall, Emily, McKeand, Samantha A., Scales, Danielle, Collins, Christy, Wetherall, Laura, Lian, Zheng Jie, Bryant, Jack A., Milner, Matthew T., Dunne, Karl A., Icke, Christopher, Rooke, Jessica L., Schneiders, Thamarai, Lund, Peter A., Cunningham, Adam F., Cole, Jeff A. and Henderson, Ian R. (2024). Transposon mutagenesis screen in Klebsiella pneumoniae identifies genetic determinants required for growth in human urine and serum. eLife, 12 RP88971, 1-27. doi: 10.7554/elife.88971.3

Transposon mutagenesis screen in Klebsiella pneumoniae identifies genetic determinants required for growth in human urine and serum

2024

Journal Article

Mechanisms of antibody-dependent enhancement of infectious disease

Wells, Timothy J., Esposito, Tyron, Henderson, Ian R. and Labzin, Larisa I. (2024). Mechanisms of antibody-dependent enhancement of infectious disease. Nature Reviews Immunology, 25 (1) e33073, 6-21. doi: 10.1038/s41577-024-01067-9

Mechanisms of antibody-dependent enhancement of infectious disease

2024

Journal Article

Loading the Centromere during Embryogenesis: NASP Functions in de Novo CENH3 Deposition

Naish, Matthew and Henderson, Ian R. (2024). Loading the Centromere during Embryogenesis: NASP Functions in de Novo CENH3 Deposition. Plant and Cell Physiology, 65 (7), 1081-1082. doi: 10.1093/pcp/pcae068

Loading the Centromere during Embryogenesis: NASP Functions in de Novo CENH3 Deposition

2024

Journal Article

Antibody-mediated serum resistance protects Pseudomonas aeruginosa during bloodstream infections

Hickson, Sarah M., Hoehensteiger, Johannes K., Mayer-Coverdale, Johanna, Torres, Von Vergel L., Feng, Wenkang, Monteith, Joshua N., Henderson, Ian R., McCarthy, Kate L. and Wells, Timothy J. (2024). Antibody-mediated serum resistance protects Pseudomonas aeruginosa during bloodstream infections. The Journal of Infectious Diseases, 230 (2), e221-e229. doi: 10.1093/infdis/jiad457

Antibody-mediated serum resistance protects Pseudomonas aeruginosa during bloodstream infections

2024

Journal Article

The structure, function, and evolution of plant centromeres

Naish, Matthew and Henderson, Ian R. (2024). The structure, function, and evolution of plant centromeres. Genome Research, 34 (1), 161-178. doi: 10.1101/gr.278409.123

The structure, function, and evolution of plant centromeres

2023

Journal Article

Excretory-secretory products from adult helminth Nippostrongylus brasiliensis have in vitro bactericidal activity

Pillay, Roxanne, Mkhize-Kwitshana, Zilungile L., Horsnell, William G. C., Icke, Christopher, Henderson, Ian, Selkirk, Murray E., Berkachy, Rita, Naidoo, Pragalathan, Niehaus, Abraham J., Singh, Ravesh, Cunningham, Adam F. and O'Shea, Matthew K. (2023). Excretory-secretory products from adult helminth Nippostrongylus brasiliensis have in vitro bactericidal activity. Journal of Medical Microbiology, 72 (11) 001762, 1-7. doi: 10.1099/jmm.0.001762

Excretory-secretory products from adult helminth Nippostrongylus brasiliensis have in vitro bactericidal activity

2023

Journal Article

Microbial primer: transposon directed insertion site sequencing (TraDIS): a high throughput method for linking genotype to phenotype

Warner, Isabel A., Kok, Weine J., Martinelli, Nicole, Yang, Zihao, Goodall, Emily C. A. and Henderson, Ian (2023). Microbial primer: transposon directed insertion site sequencing (TraDIS): a high throughput method for linking genotype to phenotype. Microbiology, 169 (11) 001385. doi: 10.1099/mic.0.001385

Microbial primer: transposon directed insertion site sequencing (TraDIS): a high throughput method for linking genotype to phenotype