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2025 Journal Article Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattleForutan, Mehrnush, Ross, Elizabeth M., Chamberlain, Amanda J., Fordyce, Geoffry, Engle, Bailey N., Nguyen, Loan T. and Hayes, Ben J. (2025). Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattle. Genetics Selection Evolution, 57 (1) 56, 1-14. doi: 10.1186/s12711-025-01004-x |
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2025 Journal Article Genetic analysis of Ornithobacterium rhinotracheale isolates; an Australian perspectiveNaseem, Muhammad Noman, Bisset, Sean William, Heng, Zi Ming, Nguyen, Loan To, Anwar, Arif, Scott, Peter, Blackall, Patrick J, Turni, Conny and Omaleki, Lida (2025). Genetic analysis of Ornithobacterium rhinotracheale isolates; an Australian perspective. Avian Pathology, 1-27. doi: 10.1080/03079457.2025.2552314 |
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2025 Journal Article Proof-of-concept trial in mature bulls prophylactically and therapeutically vaccinated with an experimental whole-cell killed Tritrichomonas foetus vaccineSantos, John Harvey M., Cavallaro, Antonino S., McCosker, Kieren D., McGowan, Michael R., Siddle, Hannah V., Nguyen, Loan T., Raza, Ali, Boe-Hansen, Gry B. and Tabor, Ala E. (2025). Proof-of-concept trial in mature bulls prophylactically and therapeutically vaccinated with an experimental whole-cell killed Tritrichomonas foetus vaccine. Parasitology, 1-33. doi: 10.1017/s0031182025100772 |
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2025 Journal Article Genome assembly of the Bos gaurus in Vietnam using nanopore sequencingNguyen, Thi Dieu Thuy, Tran, Thi Binh Nguyen and Nguyen, Loan T. (2025). Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing. BMC Genomic Data, 26 (1) 42, 42. doi: 10.1186/s12863-025-01331-4 |
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2025 Journal Article Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysisChen, Ziming, Ong, Chian Teng, Nguyen, Loan To, Lamb, Harrison J., González-Recio, O., Gutiérrez-Rivas, M., Meale, Sarah J. and Ross, Elizabeth M. (2025). Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis. BMC Genomics, 26 (1) 504, 504. doi: 10.1186/s12864-025-11649-z |
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2025 Journal Article Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologiesBanerjee, Priyanka, de Lima, Andressa Oliveira, Nguyen, Loan T. and Diniz, Wellison J. S. (2025). Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologies. Frontiers in Genetics, 16 1565301, 1-2. doi: 10.3389/fgene.2025.1565301 |
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2025 Journal Article Systematic review of vaccine strategies against Tritrichomonas foetus infection in cattle: Insights, challenges, and prospectsSantos, John Harvey M., Boe‐Hansen, Gry B., Siddle, Hannah V., Nguyen, Loan T., Raza, Ali, McGowan, Michael, McCosker, Kieren D. and Tabor, Ala E. (2025). Systematic review of vaccine strategies against Tritrichomonas foetus infection in cattle: Insights, challenges, and prospects. Parasite Immunology, 47 (1) e70003, 1-23. doi: 10.1111/pim.70003 |
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2024 Journal Article Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) rootsDao, Van Hong Thi, Nguyen, Loan To, Do, Khanh Phuong, Nguyen, Vinh The, Van Nguyen, Hieu, Pham, Khanh Ngoc, Nguyen, Truong Xuan and Dinh, Son Truong (2024). Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots. BMC Genomic Data, 25 (1) 107, 107. doi: 10.1186/s12863-024-01291-1 |
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2024 Journal Article Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibilityMantilla Valdivieso, Emily F., Ross, Elizabeth M., Raza, Ali, Nguyen, Loan, Hayes, Ben J., Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2024). Expression network analysis of bovine skin infested with Rhipicephalus australis identifies pro-inflammatory genes contributing to tick susceptibility. Scientific Reports, 14 (1) 4419, 1-14. doi: 10.1038/s41598-024-54577-w |
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2024 Journal Article Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiationOng, Chian Teng, Blackall, Patrick. J., Boe-Hansen, Gry B., deWet, Sharon, Hayes, Ben J., Indjein, Lea, Korolik, Victoria, Minchin, Catherine, Nguyen, Loan To, Nordin, Yusralimuna, Siddle, Hannah, Turni, Conny, Venus, Bronwyn, Westman, Mark E., Zhang, Zhetao and Tabor, Ala E. (2024). Whole-genome comparison using complete genomes from Campylobacter fetus strains revealed single nucleotide polymorphisms on non-genomic islands for subspecies differentiation. Frontiers in Microbiology, 15 1452564, 1452564. doi: 10.3389/fmicb.2024.1452564 |
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2024 Journal Article Stress-induced epigenetic effects driven by maternal lactation in dairy cattle: a comethylation network approachLópez-Catalina, Adrián, Reverter, Antonio, Alexandre, Pamela A., Nguyen, Loan T. and González-Recio, Oscar (2024). Stress-induced epigenetic effects driven by maternal lactation in dairy cattle: a comethylation network approach. Epigenetics, 19 (1) 2381856, 2381856. doi: 10.1080/15592294.2024.2381856 |
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2024 Journal Article Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysisOng, Chian Teng, Mody, Karishma T., Cavallaro, Antonino S., Yan, Yakun, Nguyen, Loan T., Shao, Renfu, Mitter, Neena, Mahony, Timothy J. and Ross, Elizabeth M. (2024). Chromosome-scale genome assembly of the sheep-biting louse Bovicola ovis using nanopore sequencing data and Pore-C analysis. International Journal of Molecular Sciences, 25 (14) 7824, 1-15. doi: 10.3390/ijms25147824 |
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2024 Journal Article Whole-genome sequence of Micrococcus sp. strain HOU01 isolated from potato rootDao, Van Hong Thi, Nguyen, Loan To, Tran, Phuong Minh Thi, Nguyen, Truong Xuan, Le, Ha Hai Thanh and Dinh, Son Truong (2024). Whole-genome sequence of Micrococcus sp. strain HOU01 isolated from potato root. Microbiology Resource Announcements, 13 (6), e0026824. doi: 10.1128/mra.00268-24 |
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2024 Journal Article Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertilityForutan, Mehrnush, Engle, Bailey N., Chamberlain, Amanda J., Ross, Elizabeth M., Nguyen, Loan T., D’Occhio, Michael J., Snr, Alf Collins, Kho, Elise A., Fordyce, Geoffry, Speight, Shannon, Goddard, Michael E. and Hayes, Ben J. (2024). Genome-wide association and expression quantitative trait loci in cattle reveals common genes regulating mammalian fertility. Communications Biology, 7 (1) 724, 724. doi: 10.1038/s42003-024-06403-2 |
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2023 Journal Article Use of continuous genotypes for genomic prediction in sugarcaneYadav, Seema, Ross, Elizabeth M., Wei, Xianming, Liu, Shouye, Nguyen, Loan To, Powell, Owen, Hickey, Lee T., Deomano, Emily, Atkin, Felicity, Voss‐Fels, Kai P. and Hayes, Ben J. (2023). Use of continuous genotypes for genomic prediction in sugarcane. The Plant Genome, 17 (1) e20417, e20417. doi: 10.1002/tpg2.20417 |
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2023 Journal Article Imputation strategies for genomic prediction using nanopore sequencingLamb, H. J., Nguyen, L. T., Copley, J. P., Engle, B. N., Hayes, B. J. and Ross, E. M. (2023). Imputation strategies for genomic prediction using nanopore sequencing. BMC Biology, 21 (1) 286, 1-18. doi: 10.1186/s12915-023-01782-0 |
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2023 Journal Article Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattleLamb, H. J., Nguyen, L. T., Briody, T. E., Ambrose, R. K., Hayes, B. J., Mahony, T. J. and Ross, E. M. (2023). Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattle. Animal Production Science, 63 (11), 1074-1085. doi: 10.1071/an22451 |
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2023 Journal Article Long-read Pore-C shows the 3D structure of the cattle genomeNguyen, Loan T., Jung, Hyungtaek, Ma, Jun, Andersen, Stacey and Ross, Elizabeth (2023). Long-read Pore-C shows the 3D structure of the cattle genome. Animal Production Science, 63 (11), 1-11. doi: 10.1071/an22479 |
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2023 Journal Article In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variantsNguyen, Tuan V., Vander Jagt, Christy J., Wang, Jianghui, Daetwyler, Hans D., Xiang, Ruidong, Goddard, Michael E., Nguyen, Loan T., Ross, Elizabeth M, Hayes, Ben J., Chamberlain, Amanda J. and MacLeod, Iona M. (2023). In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants. Genetics Selection Evolution, 55 (1) 9, 1-15. doi: 10.1186/s12711-023-00783-5 |
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2022 Journal Article Proteomic analysis of hypothalamus and pituitary gland in pre and postpubertal Brahman heifersNguyen, Loan To, Lau, Li Yieng and Fortes, Marina Rufino Salinas (2022). Proteomic analysis of hypothalamus and pituitary gland in pre and postpubertal Brahman heifers. Frontiers in Genetics, 13 935433, 1-15. doi: 10.3389/fgene.2022.935433 |
