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2012 Journal Article Pancreatic cancer genomes reveal aberrations in axon guidance pathway genesBiankin, Andrew V., Waddell, Nicola, Kassahn, Karin S., Gingras, Marie-Claude, Muthuswamy, Lakshmi B., Johns, Amber L., Miller, David K., Wilson, Peter J., Patch, Ann-Marie, Wu, Jianmin, Chang, David K., Cowley, Mark J., Gardiner, Brooke B., Song, Sarah, Harliwong, Ivon, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Gongora, Milena, Pajic, Marina, Scarlett, Christopher J., Gill, Anthony J., Pinho, Andreia V., Rooman, Ilse, Anderson, Matthew, Holmes, Oliver, Leonard, Conrad ... Grimmond, Sean M. (2012). Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature, 491 (7424), 399-405. doi: 10.1038/nature11547 |
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2012 Journal Article Quantitative trait loci associated with chemical composition of the chicken carcassNones, K., Ledur, M. C., Zanella, E. L., Klein, C., Pinto, L. F. B., Moura, A. S. A. M. T., Ruy, D. C., Baron, E. E., Ambo, M., Campos, R. L. R., Boschiero, C., Burt, D. W. and Coutinho, L. L. (2012). Quantitative trait loci associated with chemical composition of the chicken carcass. Animal Genetics, 43 (5), 570-576. doi: 10.1111/j.1365-2052.2012.02321.x |
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2012 Journal Article RON is not a prognostic marker for resectable pancreatic cancerTactacan, Carole M., Chang, David K., Cowley, Mark J., Humphrey, Emily S., Wu, Jianmin, Gill, Anthony J., Chou, Angela, Nones, Katia, Grimmond, Sean M., Sutherland, Robert L., Biankin, Andrew V., Daly, Roger J. and Australian Pancreratic Genome Initiative (2012). RON is not a prognostic marker for resectable pancreatic cancer. BMC Cancer, 12 (Article No.395) 395. doi: 10.1186/1471-2407-12-395 |
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2012 Journal Article qpure: a tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profilesSong, Sarah, Nones, Katia, Miller, David, Harliwong, Ivon, Kassahn, Karin S., Pinese, Mark, Pajic, Marina, Gill, Anthony J., Johns, Amber L., Anderson, Matthew, Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Wood, Scott, Xu, Qinying, Newell, Felicity, Cowley, Mark J., Wu, Jianmin, Wilson, Peter, Fink, Lynn, Biankin, Andrew V., Waddell, Nic, Grimmond, Sean M. and Pearson, John V. (2012). qpure: a tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles. PLoS One, 7 (9) e45835, e45835.1-e45835.7. doi: 10.1371/journal.pone.0045835 |
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2012 Journal Article Effects of dietary broccoli fibre and corn oil on serum lipids, faecal bile acid excretion and hepatic gene expression in ratsMandimika, Tafadzwa, Paturi, Gunaranjan, De Guzman, Cloe Erika, Butts, Christine A., Nones, Katia, Monro, John A., Butler, Ruth C., Joyce, Nigel I., Mishra, Suman and Ansell, Juliet (2012). Effects of dietary broccoli fibre and corn oil on serum lipids, faecal bile acid excretion and hepatic gene expression in rats. Food Chemistry, 131 (4), 1272-1278. doi: 10.1016/j.foodchem.2011.09.117 |
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2012 Journal Article Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinomaMann, Karen M., Ward, Jerrold M., Yew, Christopher Chin Kuan, Kovochich, Anne, Dawson, David W., Black, Michael A., Brett, Benjamin T., Sheetz, Benjamin T., Dupuy, Adam J., Chang, David K., Biankin, Andrew V., Waddell, Nicola, Kassahn, Karin S., Grimmond, Sean M., Rust, Alistair G., Adams, David J., Jenkins, Nancy A., Copeland, Neal G., Australian Pancreatic Cancer Genome Initiative, Miller, David K., Wilson, Peter J., Patch, Ann-Marie, Song, Sarah, Harliwong, Ivon, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi ... Pearson, John V. (2012). Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma. Proceedings of the National Academy of Sciences of the United States of America, 109 (16), 5934-5941. doi: 10.1073/pnas.1202490109 |
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2012 Conference Publication Individualised Measurement of Tumour-Derived Circulating Dna in Patients with Pancreatic Cancer: a Marker of Prognosis and Therapeutic ResponseChin, V. T., Waddell, N., Nones, K., Quek, K., Mawson, A., Johns, A., Grimmond, S. and Biankin, A. (2012). Individualised Measurement of Tumour-Derived Circulating Dna in Patients with Pancreatic Cancer: a Marker of Prognosis and Therapeutic Response. Medical Oncology Group of Australia Incorporated Annual Scientific Meeting, Brisbane, QLD, Australia, 8-10 August 2012. Chichester, West Sussex, United Kingdom: Wiley-Blackwell. doi: 10.1111/j.1743-7563.2012.01578.x |
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2011 Journal Article MicroRNAs and their isomiRs function cooperatively to target common biological pathwaysCloonan, Nicole, Wani, Shivangi, Xu, Qinying, Gu, Jian, Lea, Kristi, Heater, Sheila, Barbacioru, Catalin, Steptoe, Anita L., Martin, Hilary C., Nourbakhsh, Ehsan, Krishnan, Keerthana, Gardiner, Brooke, Wang, Xiaohui, Nones, Katia, Steen, Jason A., Matigan, Nicholas A., Wood, David L., Kassahn, Karin S., Waddell, Nic, Shepherd, Jill, Lee, Clarence, Ichikawa, Jeff, McKernan, Kevin, Bramlett, Kelli, Kuersten, Scott and Grimmond, Sean M. (2011). MicroRNAs and their isomiRs function cooperatively to target common biological pathways. Genome Biology: biology for the post-genomic era, 12 (12) R126, 1-20. doi: 10.1186/gb-2011-12-12-r126 |
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2011 Journal Article Genetic parameters for body weight, carcass chemical composition and yield in a broiler-layer cross developed for QTL mappingNunes, Beatriz do Nascimento, Ramos, Salvador Boccaletti, Savegnago, Rodrigo Pelicioni, Ledur, Mônica Corrêa, Nones, Kátia, Klein, Claudete Hara and Munari, Danísio Prado (2011). Genetic parameters for body weight, carcass chemical composition and yield in a broiler-layer cross developed for QTL mapping. Genetics and Molecular Biology, 34 (3), 429-434. doi: 10.1590/s1415-47572011005000019 |
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2011 Journal Article QTL for percentage of carcass and carcass parts in a broiler x layer crossBaron, E. E., Moura, A. S. A. M. T., Ledur, M. C., Pinto, L. F. B., Boschiero, C., Ruy, D. C., Nones, K., Zanella, E. L., Rosário, M. F., Burt, D. W. and Coutinho, L. L. (2011). QTL for percentage of carcass and carcass parts in a broiler x layer cross. Animal Genetics, 42 (2), 117-124. doi: 10.1111/j.1365-2052.2010.02105.x |
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2011 Journal Article Heritabilities and genetic correlations for reproductive traits in an F2 reciprocal cross chicken populationSavegnago, R.P., Buzanskas, M.E., Nunes, B.N., Ramos, S.B., Ledur, M.C., Nones, K. and Munari, D.P. (2011). Heritabilities and genetic correlations for reproductive traits in an F2 reciprocal cross chicken population. Genetics and Molecular Research, 10 (3), 1247-1254. doi: 10.4238/vol10-3gmr1053 |
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2010 Journal Article Maternal influences on the transmission of leukocyte gene expression profiles in population samples from Brisbane, AustraliaMason, E, Tronc, G, Nones, K, Matigian, N, Kim, J, Aronow, BJ, Wolfinger, RD, Wells, C and Gibson, G (2010). Maternal influences on the transmission of leukocyte gene expression profiles in population samples from Brisbane, Australia. PLoS ONE, 5 (12) e14479, e14479 -1-e14479-12. doi: 10.1371/journal.pone.0014479 |
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2010 Journal Article Diversity of cecal bacteria is altered in interleukin-10 gene-deficient mice before and after colitis onset and when fed polyunsaturated fatty acids.Knoch, Bianca, Nones, Katia, Barnett, Matthew P. G., McNabb, Warren C. and Roy, Nicole C. (2010). Diversity of cecal bacteria is altered in interleukin-10 gene-deficient mice before and after colitis onset and when fed polyunsaturated fatty acids.. Microbiology, 156 (11), 3306-3316. doi: 10.1099/mic.0.041723-0 |
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2010 Journal Article Mapping quantitative trait loci in Gallus gallus using principal components Mapeamento de locos de características quantitativas em Gallus gallus com utilização de componentes principaisPinto, Luís Fernando Batista, Packer, Irineu Umberto, Ledur, Mônica Corrêa, Moura, Ana Silvia Alves Meira Tavares, Nones, Kátia and Coutinho, Luiz Lehmann (2010). Mapping quantitative trait loci in Gallus gallus using principal components Mapeamento de locos de características quantitativas em Gallus gallus com utilização de componentes principais. Revista Brasileira de Zootecnia, 39 (11), 2434-2441. doi: 10.1590/S1516-35982010001100016 |
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2010 Journal Article Cecal and colonic responses in rats fed 5 or 30% corn oil diets containing either 7.5% broccoli dietary fiber or microcrystalline cellulosePaturi, Gunaranjan, Butts, Christine, Monro, John, Nones, Katia, Martell, Sheridan, Butler, Ruth and Sutherland, Juliet (2010). Cecal and colonic responses in rats fed 5 or 30% corn oil diets containing either 7.5% broccoli dietary fiber or microcrystalline cellulose. Journal of Agricultural and Food Chemistry, 58 (10), 6510-6515. doi: 10.1021/jf100296m |
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2010 Journal Article Changes in colon gene expression associated with increased colon inflammation in interleukin-10 gene-deficient mice inoculated with Enterococcus speciesBarnett, Matthew P. G., McNabb, Warren C., Cookson, Adrian L., Zhu, Shuotun, Davy, Marcus, Knoch, Bianca, Nones, Katia, Hodgkinson, Alison J. and Roy, Nicole C. (2010). Changes in colon gene expression associated with increased colon inflammation in interleukin-10 gene-deficient mice inoculated with Enterococcus species. BMC Immunology, 11. doi: 10.1186/1471-2172-11-39 |
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2010 Book Chapter Evaluation of the beneficial effects of phytonutrients by metabolomicsNones, Katia and Villas-Boas, Silas G. (2010). Evaluation of the beneficial effects of phytonutrients by metabolomics. Genomics, proteomics, and metabolomics in nutraceuticals and functional foods. (pp. 287-296) edited by Debasis Bagchi, Francis C. Lau and Manashi Bagchi. Iowa, USA: Blackwell Publishing. doi: 10.1002/9780813821474.ch19 |
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2009 Journal Article Quantitative trait loci associated with fatness in a broiler-layer crossCampos, R. L. R., Nones, K., Ledur, M. C., Moura ASAMT, Pinto, L. F. B., Ambo, M., Boschiero, C., Ruy, D. C., Baron, E. E., Ninov, K., Altenhofen, C. A. B., Burt, D. W. and Coutinho, L. L. (2009). Quantitative trait loci associated with fatness in a broiler-layer cross. Animal Genetics, 40 (5), 729-736. doi: 10.1111/j.1365-2052.2009.01910.x |
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2009 Journal Article Multidrug resistance gene deficient (mdr1a(-/-)) mice have an altered caecal microbiota that precedes the onset of intestinal inflammationNones, K., Knoch, B., Dommels, Y. E., Paturi, G., Butts, C., McNabb, W. C. and Roy, N. C. (2009). Multidrug resistance gene deficient (mdr1a(-/-)) mice have an altered caecal microbiota that precedes the onset of intestinal inflammation. Journal of Applied Microbiology, 107 (2), 557-566. doi: 10.1111/j.1365-2672.2009.04225.x |
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2009 Journal Article Initiation and elongation steps of mRNA translation are involved in the increase in milk protein yield caused by growth hormone administration during lactationHayashi, A. A., Nones, K., Roy, N. C., McNabb, W. C., Mackenzie, D. S., Pacheco, D. and McCoard, S. (2009). Initiation and elongation steps of mRNA translation are involved in the increase in milk protein yield caused by growth hormone administration during lactation. Journal of Dairy Science, 92 (5), 1889-1899. doi: 10.3168/jds.2008-1334 |
