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2025 Journal Article Ensemble AnalySis with Interpretable Genomic Prediction (EasiGP): Computational tool for interpreting ensembles of genomic prediction modelsTomura, Shunichiro, Wilkinson, Melanie J., Powell, Owen and Cooper, Mark (2025). Ensemble AnalySis with Interpretable Genomic Prediction (EasiGP): Computational tool for interpreting ensembles of genomic prediction models. The Plant Genome, 18 (4) e70138, 1-16. doi: 10.1002/tpg2.70138 |
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2025 Journal Article Increased genomic predictive ability in mango using GWAS-preselected variants and fixed-effect SNPsMunyengwa, Norman, Wilkinson, Melanie J., Ortiz-Barrientos, Daniel, Dillon, Natalie L., Webb, Matthew, Ali, Asjad, Bally, Ian S. E., Myburg, Alexander A. and Hardner, Craig M. (2025). Increased genomic predictive ability in mango using GWAS-preselected variants and fixed-effect SNPs. Frontiers in Plant Science, 16 1664012, 1-21. doi: 10.3389/fpls.2025.1664012 |
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2025 Journal Article Integrative genomics for mango genetics and breedingAhmad, Bilal, Su, Ying, Arshad, Rida, Razzaq, Tayyaba, Zhang, Yi, Hou, Ting, Li, Chaochao, Jin, Zhongxin, Chen, Chengjie, Wang, Peng, Wilkinson, Melanie J., Bai, Yibo, Chen, Yeyuan, Zhang, Yu, Dang, Zhiguo, Zhou, Yongfeng, Tian, Xinmin and Huang, Jianfeng (2025). Integrative genomics for mango genetics and breeding. Horticulture Research uhaf260. doi: 10.1093/hr/uhaf260 |
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2025 Journal Article Ecological and mutation‐order speciation in SenecioJames, Maddie E., Melo, Maria C., Roda, Federico, Bernal‐Franco, Diana, Wilkinson, Melanie J., Walter, Gregory M., Liu, Huanle, Engelstädter, Jan and Ortiz‐Barrientos, Daniel (2025). Ecological and mutation‐order speciation in Senecio. Molecular Ecology e70090, e70090. doi: 10.1111/mec.70090 |
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2025 Journal Article Gravitropic gene expression divergence associated with adaptation to contrasting environments in an Australian wildflowerBroad, Zoe, Lefreve, James, Wilkinson, Melanie J., Barton, Samuel, Barbier, Francois, Jung, Hyungtaek, Donovan, Diane and Ortiz‐Barrientos, Daniel (2025). Gravitropic gene expression divergence associated with adaptation to contrasting environments in an Australian wildflower. Molecular Ecology, 34 (15) e17543, 1-18. doi: 10.1111/mec.17543 |
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2025 Journal Article Breeding perspectives on tackling trait genome-to-phenome (G2P) dimensionality using ensemble-based genomic predictionCooper, Mark, Tomura, Shunichiro, Wilkinson, Melanie J., Powell, Owen and Messina, Carlos D. (2025). Breeding perspectives on tackling trait genome-to-phenome (G2P) dimensionality using ensemble-based genomic prediction. Theoretical and Applied Genetics, 138 (7) 172, 1-24. doi: 10.1007/s00122-025-04960-6 |
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2025 Journal Article Improved Genomic Prediction Performance with Ensembles of Diverse ModelsTomura, Shunichiro, Wilkinson, Melanie J., Cooper, Mark and Powell, Owen (2025). Improved Genomic Prediction Performance with Ensembles of Diverse Models. G3: Genes, Genomes, Genetics, 15 (5) jkaf048, 1-15. doi: 10.1093/g3journal/jkaf048 |
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2025 Journal Article Centromeres are hotspots for chromosomal inversions and breeding traits in mangoWilkinson, Melanie J., McLay, Kathleen, Kainer, David, Elphinstone, Cassandra, Dillon, Natalie L., Webb, Matthew, Wijesundara, Upendra K., Ali, Asjad, Bally, Ian S. E., Munyengwa, Norman, Furtado, Agnelo, Henry, Robert J., Hardner, Craig M. and Ortiz‐Barrientos, Daniel (2025). Centromeres are hotspots for chromosomal inversions and breeding traits in mango. New Phytologist, 245 (2), 899-913. doi: 10.1111/nph.20252 |
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2023 Journal Article Uncovering the genetic architecture of parallel evolutionJames, Maddie E., Allsopp, Robin N., Groh, Jeffrey S., Kaur, Avneet, Wilkinson, Melanie J. and Ortiz‐Barrientos, Daniel (2023). Uncovering the genetic architecture of parallel evolution. Molecular Ecology, 32 (20), 5575-5589. doi: 10.1111/mec.17134 |
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2022 Journal Article The influence of genetic structure on phenotypic diversity in the Australian mango (Mangifera indica) gene poolWilkinson, Melanie J., Yamashita, Risa, James, Maddie E., Bally, Ian S. E., Dillon, Natalie L., Ali, Asjad, Hardner, Craig M. and Ortiz-Barrientos, Daniel (2022). The influence of genetic structure on phenotypic diversity in the Australian mango (Mangifera indica) gene pool. Scientific Reports, 12 (1) 20614, 1-13. doi: 10.1038/s41598-022-24800-7 |
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2021 Journal Article Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflowerWilkinson, Melanie J., Roda, Federico, Walter, Greg M., James, Maddie E., Nipper, Rick, Walsh, Jessica, Allen, Scott L., North, Henry L., Beveridge, Christine A. and Ortiz-Barrientos, Daniel (2021). Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflower. Proceedings of the National Academy of Sciences, 118 (47) e2004901118, e2004901118. doi: 10.1073/pnas.2004901118 |
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2021 Journal Article Phenotypic and genotypic parallel evolution in parapatric ecotypes of SenecioJames, Maddie E., Wilkinson, Melanie J., Bernal, Diana M., Liu, Huanle, North, Henry L., Engelstädter, Jan and Ortiz‐Barrientos, Daniel (2021). Phenotypic and genotypic parallel evolution in parapatric ecotypes of Senecio. Evolution, 75 (12), 3115-3131. doi: 10.1111/evo.14387 |
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2020 Journal Article Loss of ecologically important genetic variation in late generation hybrids reveals links between adaptation and speciationWalter, Greg M., Richards, Thomas J., Wilkinson, Melanie J, Blows, Mark W., Aguirre, J. David and Ortiz‐Barrientos, Daniel (2020). Loss of ecologically important genetic variation in late generation hybrids reveals links between adaptation and speciation. Evolution Letters, 4 (4) evl3.187, 302-316. doi: 10.1002/evl3.187 |
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2018 Journal Article Environmentally induced development costs underlie fitness tradeoffsWalter, Greg M., Wilkinson, Melanie J., Aguirre, J. David, Blows, Mark W. and Ortiz-Barrientos, Daniel (2018). Environmentally induced development costs underlie fitness tradeoffs. Ecology, 99 (6), 1391-1401. doi: 10.1002/ecy.2234 |
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2016 Journal Article Diversification across a heterogeneous landscapeWalter, Greg M., Wilkinson, Melanie J., James, Maddie E., Richards, Thomas J., Aguirre, J. David and Ortiz-Barrientos, Daniel (2016). Diversification across a heterogeneous landscape. Evolution, 70 (9), 1979-1992. doi: 10.1111/evo.13009 |
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2013 Journal Article Convergence and divergence during the adaptation to similar environments by an Australian groundselRoda, Federico, Liu, Huanle, Wilkinson, Melanie J., Walter, Gregory M., James, Maddie E., Bernal, Diana M., Melo, Maria C., Lowe, Andrew, Rieseberg, Loren H., Prentis, Peter and Ortiz-Barrientos, Daniel (2013). Convergence and divergence during the adaptation to similar environments by an Australian groundsel. Evolution, 67 (9), 2515-2529. doi: 10.1111/evo.12136 |
