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2024 Journal Article Extraction of high‐molecular‐weight DNA from <i>Streptococcus</i> spp. for nanopore sequencing in resource‐limited settingsDas, Suvra, Delamare‐Deboutteville, JérÔme, Barnes, Andrew C. and Rudenko, Oleksandra (2024). Extraction of high‐molecular‐weight DNA from Streptococcus spp. for nanopore sequencing in resource‐limited settings. MicrobiologyOpen, 13 (4) e1432, e1432. doi: 10.1002/mbo3.1432 |
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2024 Journal Article Serological and molecular typing of Tenacibaculum maritimum from New Zealand farmed salmon, Oncorhynchus tshawytschaKumanan, Karthiga, Delisle, Lizenn, Angelucci, Connie, Hunter, Ryan B.J., Rudenko, Oleksandra, Carson, Jeremy, Morrison, Richard N., Barnes, Andrew C. and Hutson, Kate S. (2024). Serological and molecular typing of Tenacibaculum maritimum from New Zealand farmed salmon, Oncorhynchus tshawytscha. Aquaculture, 578 740055, 1-13. doi: 10.1016/j.aquaculture.2023.740055 |
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2023 Journal Article Transforming the untransformable with knockout minicircles: high‐efficiency transformation and vector‐free allelic exchange knockout in the fish pathogen Photobacterium damselaeRudenko, Oleksandra, Baseggio, Laura, McGuigan, Fynn and Barnes, Andrew C. (2023). Transforming the untransformable with knockout minicircles: high‐efficiency transformation and vector‐free allelic exchange knockout in the fish pathogen Photobacterium damselae. MicrobiologyOpen, 12 (4) e1374, e1374. doi: 10.1002/mbo3.1374 |
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2022 Journal Article The evolution of a specialized, highly virulent fish pathogen through gene loss and acquisition of host-specific survival mechanismsBaseggio, Laura, Rudenko, Oleksandra, Engelstädter, Jan and Barnes, Andrew C. (2022). The evolution of a specialized, highly virulent fish pathogen through gene loss and acquisition of host-specific survival mechanisms. Applied and Environmental Microbiology, 88 (14) e0022222, 1-19. doi: 10.1128/aem.00222-22 |
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2022 Journal Article A high-quality reference genome for the fish pathogen Streptococcus iniaeAlsheikh-Hussain, Areej S., Ben Zakour, Nouri L., Forde, Brian M., Rudenko, Oleksandra, Barnes, Andrew C. and Beatson, Scott A. (2022). A high-quality reference genome for the fish pathogen Streptococcus iniae. Microbial Genomics, 8 (3) 000777. doi: 10.1099/mgen.0.000777 |
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2021 Journal Article Autogenous vaccination in aquaculture: a locally enabled solution towards reduction of the global antimicrobial resistance problemBarnes, Andrew C., Rudenko, Oleksandra, Landos, Matt, Dong, Ha Thanh, Lusiastuti, Angela, Phuoc, Le Hong and Delamare‐Deboutteville, Jerome (2021). Autogenous vaccination in aquaculture: a locally enabled solution towards reduction of the global antimicrobial resistance problem. Reviews in Aquaculture, 14 (2), 907-918. doi: 10.1111/raq.12633 |
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2021 Journal Article Molecular investigation of recurrent Streptococcus iniae epizootics affecting coral reef fish on an oceanic island suggests at least two distinct emergence eventsIrion, Solène, Silayeva, Oleksandra, Sweet, Michael, Chabanet, Pascale, Barnes, Andrew C., Tortosa, Pablo and Séré, Mathieu G. (2021). Molecular investigation of recurrent Streptococcus iniae epizootics affecting coral reef fish on an oceanic island suggests at least two distinct emergence events. Frontiers in Microbiology, 12 749734, 749734. doi: 10.3389/fmicb.2021.749734 |
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2021 Journal Article Complete, closed and curated genome sequences of Photobacterium damselae subsp. piscicida isolates from Australia indicate mobilome-driven localized evolution and novel pathogenicity determinantsBaseggio, Laura, Rudenko, Oleksandra, Buller, Nicky, Landos, Matt, Englestädter, Jan and Barnes, Andrew C. (2021). Complete, closed and curated genome sequences of Photobacterium damselae subsp. piscicida isolates from Australia indicate mobilome-driven localized evolution and novel pathogenicity determinants. Microbial Genomics, 7 (4) 000562, 1-14. doi: 10.1099/mgen.0.000562 |
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2020 Journal Article Evolutionary epidemiology of Streptococcus iniae: linking mutation rate dynamics with adaptation to novel immunological landscapesRudenko, Oleksandra, Engelstädter, Jan and Barnes, Andrew C. (2020). Evolutionary epidemiology of Streptococcus iniae: linking mutation rate dynamics with adaptation to novel immunological landscapes. Infection, Genetics and Evolution, 85 104435, 104435. doi: 10.1016/j.meegid.2020.104435 |
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2019 Other Outputs The role of heritable mutators in evolution and epidemiology of bacterial pathogensSilayeva, Oleksandra (2019). The role of heritable mutators in evolution and epidemiology of bacterial pathogens. PhD Thesis, School of Biological Sciences, The University of Queensland. doi: 10.14264/uql.2019.201 |
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2017 Journal Article Gibson Assembly facilitates bacterial allelic exchange mutagenesisRudenko, Oleksandra and Barnes, Andrew C. (2017). Gibson Assembly facilitates bacterial allelic exchange mutagenesis. Journal of Microbiological Methods, 144, 157-163. doi: 10.1016/j.mimet.2017.11.023 |
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2016 Journal Article Vaccination against streptococcal infections in farmed fishBarnes, Andrew C. and Rudenko, Oleksandra (2016). Vaccination against streptococcal infections in farmed fish. Microbiology Australia, 37 (3), 118-121. doi: 10.1071/MA16040 |
