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2017 Journal Article Sirtuins in the phylum Basidiomycota: A role in virulence in Cryptococcus neoformansArras, Samantha D. M., Chitty, Jessica L., Wizrah, Maha S. I., Erpf, Paige E., Schulz, Benjamin L., Tanurdzic, Milos and Fraser, James A. (2017). Sirtuins in the phylum Basidiomycota: A role in virulence in Cryptococcus neoformans. Scientific Reports, 7 (1) 46567, 46567.1-46567.14. doi: 10.1038/srep46567 |
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2017 Journal Article Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexityGaiti, Federico, Jindrich, Katia, Fernandez-Valverde, Selene L., Roper, Kathrein E., Degnan, Bernard M. and Tanurdzic, Milos (2017). Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity. Elife, 6 e22194. doi: 10.7554/eLife.22194 |
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2017 Journal Article De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genesKerr, Stephanie C., Gaiti, Federico, Beveridge, Christine A. and Tanurdzic, Milos (2017). De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genes. BMC Genomics, 18 (1) 221, 221. doi: 10.1186/s12864-017-3577-x |
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2015 Journal Article Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal ComplexityGaiti, Federico, Fernandez-Valverde, Selene L., Nakanishi, Nagayasu, Calcino, Andrew D., Yanai, Itai, Tanurdzic, Milos and Degnan, Bernard M. (2015). Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity. Molecular Biology and Evolution, 32 (9), 2367-2382. doi: 10.1093/molbev/msv117 |
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2015 Journal Article The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plantsLi, Ying, Mukherjee, Indrani, Thum, Karen E., Tanurdzic, Milos, Katari, Manpreet S., Obertello, Mariana, Edwards, Molly B., McCombie, W. Richard, Martienssen, Robert A. and Coruzzi, Gloria M. (2015). The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology, 16 (79) 79, 1-15. doi: 10.1186/s13059-015-0640-2 |
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2014 Journal Article Differential sRNA regulation in leaves and roots of sugarcane under water depletionThiebaut, Flavia, Grativol, Clı´cia, Tanurdzic, Milos, Carnavale-Bottino, Mariana, Vieira, Tauan, Motta, Mariana Romeiro, Rojas, Cristian, Vincentini, Renato, Chabregas, Sabrina Moutinho, Hemerly, Adriana Silva, Martienssen, Robert A. and Ferreira, Paulo Cavalcanti Gomes (2014). Differential sRNA regulation in leaves and roots of sugarcane under water depletion. PLoS One, 9 (4) e93822, e93822.1-e93822.17. doi: 10.1371/journal.pone.0093822 |
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2013 Journal Article Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana rootsVidal, Elena A., Moyano, Tomás C., Krouk, Gabriel, Katari, Manpreet S., Tanurdzic, Milos, McCombie, W. Richard, Coruzzi, Gloria M. and Gutierrez, Rodrigo A. (2013). Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 14 (1) 701, 701.1-701.15. doi: 10.1186/1471-2164-14-701 |
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2012 Journal Article Computational identification and analysis of novel sugarcane microRNAsThiebaut, Flavia, Grativol, Clicia, Carnavale-Bottino, Mariana, Rojas, Cristian Antonio, Tanurdzic, Milos, Farinelli, Laurent, Martienssen, Robert A., Hemerly, Adriana Silva and Gomes Ferreira, Paulo Cavalcanti (2012). Computational identification and analysis of novel sugarcane microRNAs. BMC Genomics, 13 (1) 290, 290.1-290.14. doi: 10.1186/1471-2164-13-290 |
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2012 Book Chapter Origins of novel phenotypic variation in polyploidsFinigan, Patrick, Tanurdzic, Milos and Martienssen, Robert A. (2012). Origins of novel phenotypic variation in polyploids. Polyploidy and Genome Evolution. (pp. 57-76) edited by Pamela S. Soltis and Douglas E. Soltis. Heidelberg, Germany: Springer. doi: 10.1007/978-3-642-31442-1_4 |
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2012 Book Chapter Reverse Genetic Analyses of Gene Function in Fern GametophytesRutherford, George, Tanurdzic, Milos, Hasebe, Mitsuyasu and Banks, Jo Ann (2012). Reverse Genetic Analyses of Gene Function in Fern Gametophytes. Vascular Plants and Paleobotany. (pp. 54-66) edited by Philip Stewart and Sabine Globig. Point Pleasant, NJ, United States: CRC Press. doi: 10.1201/b12226-6 |
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2011 Journal Article The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular PlantsBanks, Jo Ann, Nishiyama, Tomoaki, Hasebe, Mitsuyasu, Bowman, John L., Gribskov, Michael, dePamphilis, Claude, Albert, Victor A., Aono, Naoki, Aoyama, Tsuyoshi, Ambrose, Barbara A., Ashton, Neil W., Axtell, Michael J., Barker, Elizabeth, Barker, Michael S., Bennetzen, Jeffrey L., Bonawitz, Nicholas D., Chapple, Clint, Cheng, Chaoyang, Correa, Luiz Gustavo Guedes, Dacre, Michael, DeBarry, Jeremy, Dreyer, Ingo, Elias, Marek, Engstrom, Eric M., Estelle, Mark, Feng, Liang, Finet, Cedric, Floyd, Sandra K., Frommer, Wolf B. ... Grigoriev, Igor V. (2011). The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science, 332 (6032), 960-963. doi: 10.1126/science.1203810 |
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2010 Journal Article Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin stateLee, Tae-Jin, Pascuzzi, Pete E., Settlage, Sharon B., Shultz, Randall W., Tanurdzic, Milos, Rabinowicz, Pablo D., Menges, Margit, Zheng, Ping, Main, Dorrie, Murray, James A. H., Sosinski, Bryon, Allen, George C., Martienssen, Robert A., Hanley-Bowdoin, Linda, Vaughn, Matthew W. and Thompson, William F. (2010). Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. PLoS Genetics, 6 (6) e1000982, e1000982.1-e1000982.18. doi: 10.1371/journal.pgen.1000982 |
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2009 Journal Article Epigenetic reprogramming and small RNA silencing of transposable elements in pollenSlotkin, R. Keith, Vaughn, Matthew, Borges, Filipe, Tanurdzic, Milos, Becker, Joerg D., Feijo, Jose A. and Martienssen, Robert A. (2009). Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell, 136 (3), 461-472. doi: 10.1016/j.cell.2008.12.038 |
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2008 Journal Article Epigenomic consequences of immortalized plant cell suspension cultureTanurdzic, Milos, Vaughn, Matthew W., Jiang, Hongmei, Lee, Tae-Jin, Slotkin, R. Keith, Sosinski, Bryon, Thompson, William F., Doerge, R. W. and Martienssen, Robert A. (2008). Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biology, 6 (12), 2880-2895. doi: 10.1371/journal.pbio.0060302 |
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2008 Journal Article ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcriptionMasuda, Hana Paula, Cabral, Luiz Mors, De Veylder, Lieven, Tanurdzic, Milos, Engler, Janice de Almeida, Geelen, Danny, Inze, Dirk, Martienssen, Robert A., Ferreira, Paulo C. G. and Hemerly, Adriana S. (2008). ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. EMBO Journal, 27 (20), 2746-2756. doi: 10.1038/emboj.2008.191 |
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2008 Journal Article Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1Gutierez, Rodrigo A., Stokes, Trevor L., Thum, Karen, Xu, Xiaodong, Obertello, Mariana, Katari, Manpreet S., Tanurdzic, Milos, Dean, Alexis, Nero, Dannion C., McClung, C. Robertson and Coruzzi, Gloria M. (2008). Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proceedings of the National Academy of Sciences of the United States of America, 105 (12), 4939-4944. doi: 10.1073/pnas.0800211105 |
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2008 Conference Publication Epigenetic inheritance and reprogramming in plants and fission yeastMartienssen, R. A., Kloc, A., Slotkin, R. K. and Tanurdzic, M. (2008). Epigenetic inheritance and reprogramming in plants and fission yeast. 73rd Cold Spring Harbor Symposium on Quantitative Biology, Cold Spring Harbor, NY, New York, 28 May - 2 June 2008. Woodbury, NY, United States: Cold Spring Harbor Laboratory Press. doi: 10.1101/sqb.2008.73.062 |
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2007 Journal Article Epigenetic natural variation in Arabidopsis thalianaVaughn, Matthew W., Tanurdzic, Milos, Lippman, Zachary, Jiang, Hongmei, Carrasquillo, Robert, Rabinowicz, Pablo D., Dedhia, Neilay, McCombie, W. Richard, Agier, Nicolas, Bulski, Agnes, Colot, Vincent, Doerge, R. W. and Martienssen, Robert A. (2007). Epigenetic natural variation in Arabidopsis thaliana. PloS Biology, 5 (7), 1617-1629. doi: 10.1371/journal.pbio.0050174 |
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2007 Conference Publication Silent running: RNA interference and heterochromatic modificationMartienssen, Rob, Zaratiegui, Mikel, Irvine, Danielle, Goto, Derek, Slotkin, Keith, Tanurdzic, Milos, Lippman, Zach, Vaughn, Matt, May, Bruce, Cande, Zac, Colot, Vincent and Doerge, R. W. (2007). Silent running: RNA interference and heterochromatic modification. 16th International Chromosome Conference (ICC 16), Amsterdam, Netherlands, 25-29 August 2007. Dordrecht, Netherlands: Springer. doi: 10.1007/s10577-007-1912-9 |
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2005 Journal Article Replication, repair, and reactivationVaughn, Matthew W., Tanurdzic, Milos and Martienssen, Rob (2005). Replication, repair, and reactivation. Developmental Cell, 9 (6), 724-725. doi: 10.1016/j.devcel.2005.11.011 |
