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2022 Book Chapter Image synthesis for MRI-only radiotherapy treatment planningDowling, Jason, O'Connor, Laura, Acosta, Oscar, Raniga, Parnesh, de Crevoisier, Renaud, Nunes, Jean-Claude, Barateau, Anais, Chourak, Hilda, Choi, Jae Hyuk and Greer, Peter (2022). Image synthesis for MRI-only radiotherapy treatment planning. Biomedical image synthesis and simulation: methods and applications. (pp. 423-445) edited by Ninon Burgos and David Svoboda. London, United Kingdom: Academic Press/Elsevier. doi: 10.1016/B978-0-12-824349-7.00027-X |
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2022 Journal Article Automated COVID-19 diagnosis and prognosis with medical imaging and who is publishing: a systematic reviewGillman, Ashley G., Lunardo, Febrio, Prinable, Joseph, Belous, Gregg, Nicolson, Aaron, Min, Hang, Terhorst, Andrew and Dowling, Jason A. (2022). Automated COVID-19 diagnosis and prognosis with medical imaging and who is publishing: a systematic review. Physical and Engineering Sciences in Medicine, 45 (1), 13-29. doi: 10.1007/s13246-021-01093-0 |
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2022 Conference Publication ImageCLEF 2021 Best of Labs: The curious case of caption generation for medical imagesNicolson, Aaron, Dowling, Jason and Koopman, Bevan (2022). ImageCLEF 2021 Best of Labs: The curious case of caption generation for medical images. 13th International Conference of the CLEF Association, Bologna, Italy, 5-8 September 2022. Cham, Switzerland: Springer International Publishing. doi: 10.1007/978-3-031-13643-6_15 |
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2022 Journal Article Training radiomics-based CNNs for clinical outcome prediction: challenges, strategies and findingsPang, Shuchao, Field, Matthew, Dowling, Jason, Vinod, Shalini, Holloway, Lois and Sowmya, Arcot (2022). Training radiomics-based CNNs for clinical outcome prediction: challenges, strategies and findings. Artificial Intelligence in Medicine, 123 102230, 1-11. doi: 10.1016/j.artmed.2021.102230 |
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2022 Conference Publication CSIRO at ImageCLEFmedical Caption 2022Lebrat, Leo, Nicolson, Aaron, Santa Cruz, Rodrigo, Belous, Gregg, Koopman, Bevan and Dowling, Jason (2022). CSIRO at ImageCLEFmedical Caption 2022. CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, 5-8 September 2022. Aachen, Germany: Rheinisch-Westfaelische Technische Hochschule Aachen Lehrstuhl Informatik. |
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2022 Conference Publication CSIRO at the ImageCLEFmed 2022 Tuberculosis Caverns Detection Challenge: A 2D and 3D deep learning detection network approachXin, Bowen, Min, Hang, Gillman, Ashley G., Koopman, Bevan, Dowling, Jason and Nicolson, Aaron (2022). CSIRO at the ImageCLEFmed 2022 Tuberculosis Caverns Detection Challenge: A 2D and 3D deep learning detection network approach. CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, 5-8 September 2022. Aachen, Germany: Rheinisch-Westfaelische Technische Hochschule Aachen Lehrstuhl Informatik. |
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2021 Journal Article Optimisation and validation of an integrated magnetic resonance imaging-only radiotherapy planning solutionO'Connor, Laura M., Skehan, Kate, Choi, Jae H., Simpson, John, Martin, Jarad, Warren-Forward, Helen, Dowling, Jason and Greer, Peter (2021). Optimisation and validation of an integrated magnetic resonance imaging-only radiotherapy planning solution. Physics and Imaging in Radiation Oncology, 20, 34-39. doi: 10.1016/j.phro.2021.10.001 |
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2021 Journal Article Automatic radiotherapy delineation quality assurance on prostate MRI with deep learning in a multicentre clinical trialMin, Hang, Dowling, Jason, Jameson, Michael G, Cloak, Kirrily, Faustino, Joselle, Sidhom, Mark, Martin, Jarad, Ebert, Martin A, Haworth, Annette, Chlap, Phillip, de Leon, Jeremiah, Berry, Megan, Pryor, David, Greer, Peter, Vinod, Shalini K and Holloway, Lois (2021). Automatic radiotherapy delineation quality assurance on prostate MRI with deep learning in a multicentre clinical trial. Physics in Medicine and Biology, 66 (19) 195008, 195008. doi: 10.1088/1361-6560/ac25d5 |
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2021 Conference Publication A three-dimensional computational model of prostate cancer biologyFinnegan, Robert, Reynolds, Hayley, Sun, Yu, Ebert, Martin, Holloway, Lois, Sykes, Jonathan, Dowling, Jason and Haworth, Annette (2021). A three-dimensional computational model of prostate cancer biology. HOBOKEN: WILEY. |
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2021 Conference Publication a probabilistic biological atlas for prostate cancerFinnegan, R., Reynolds, H. M., Sun, Y., Ebert, M. A., Holloway, L., Sykes, J., Dowling, J. and Haworth, A. (2021). a probabilistic biological atlas for prostate cancer. Annual Meeting of the European-Society-for-Radiotherapy-and-Oncology (ESTRO), Electr Network, Aug 28-31, 2021. CLARE: ELSEVIER IRELAND LTD. |
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2021 Journal Article Deep learning for segmentation in radiation therapy planning: a reviewSamarasinghe, Gihan, Jameson, Michael, Vinod, Shalini, Field, Matthew, Dowling, Jason, Sowmya, Arcot and Holloway, Lois (2021). Deep learning for segmentation in radiation therapy planning: a review. Journal of Medical Imaging and Radiation Oncology, 65 (5), 578-595. doi: 10.1111/1754-9485.13286 |
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2021 Journal Article Effects of MR imaging time reduction on substitute CT generation for prostate MRI-only treatment planningYoung, Tony, Dowling, Jason, Rai, Robba, Liney, Gary, Greer, Peter, Thwaites, David and Holloway, Lois (2021). Effects of MR imaging time reduction on substitute CT generation for prostate MRI-only treatment planning. Physical and Engineering Sciences in Medicine, 44 (3), 799-807. doi: 10.1007/s13246-021-01031-0 |
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2021 Conference Publication Quantification Of Cardiac Chamber Size From Chest CT: Application To COVID19Otton, J., Finnegan, R. and Dowling, J. (2021). Quantification Of Cardiac Chamber Size From Chest CT: Application To COVID19. 16th Annual Scientific Meeting of the Society of Cardiovascular Computed Tomography, Online, 16 - 17 July 2021. Philadelphia, PA United States: Elsevier. doi: 10.1016/j.jcct.2021.06.216 |
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2021 Journal Article A review of medical image data augmentation techniques for deep learning applicationsChlap, Phillip, Min, Hang, Vandenberg, Nym, Dowling, Jason, Holloway, Lois and Haworth, Annette (2021). A review of medical image data augmentation techniques for deep learning applications. Journal of Medical Imaging and Radiation Oncology, 65 (5), 545-563. doi: 10.1111/1754-9485.13261 |
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2021 Conference Publication Voxel-wise analysis for spatial characterisation of pseudo-CT errors in MRI-only radiotherapy planningChourak, Hilda, Barateau, Anais, Mylona, Eugenia, Cadin, Capucine, Lafond, Caroline, Greer, Peter, Dowling, Jason, Jean-Claude-Nunes, , Crevoisier, Renaud de and Acosta, Oscar (2021). Voxel-wise analysis for spatial characterisation of pseudo-CT errors in MRI-only radiotherapy planning. IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, 13-16 April 2021. Piscataway, NJ, United States: IEEE. doi: 10.1109/isbi48211.2021.9433800 |
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2021 Conference Publication Going Deeper With Brain Morphometry Using Neural NetworksCruz, Rodrigo Santa, Lebrat, Leo, Bourgeat, Pierrick, Dore, Vincent, Dowling, Jason, Fripp, Jurgen, Fookes, Clinton and Salvado, Olivier (2021). Going Deeper With Brain Morphometry Using Neural Networks. 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, 13-16 April 2021. Piscataway, NJ United States: IEEE. doi: 10.1109/isbi48211.2021.9434039 |
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2021 Journal Article Automatic deep learning-based pleural effusion classification in lung ultrasound images for respiratory pathology diagnosisTsai, Chung-Han, van der Burgt, Jeroen, Vukovic, Damjan, Kaur, Nancy, Demi, Libertario, Canty, David, Wang, Andrew, Royse, Alistair, Royse, Colin, Haji, Kavi, Dowling, Jason, Chetty, Girija and Fontanarosa, Davide (2021). Automatic deep learning-based pleural effusion classification in lung ultrasound images for respiratory pathology diagnosis. Physica Medica, 83, 38-45. doi: 10.1016/j.ejmp.2021.02.023 |
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2021 Journal Article Validation of a new open-source method for automatic delineation and dose assessment of the heart and LADCA in breast radiotherapy with simultaneous uncertainty estimationFinnegan, Robert, Laugaard Lorenzen, Ebbe, Dowling, Jason, Thwaites, David, Delaney, Geoff, Brink, Carsten and Holloway, Lois (2021). Validation of a new open-source method for automatic delineation and dose assessment of the heart and LADCA in breast radiotherapy with simultaneous uncertainty estimation. Physics in Medicine & Biology, 66 (3) 035014, 035014. doi: 10.1088/1361-6560/abcb1d |
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2021 Journal Article Feasibility of using a novel automatic cardiac segmentation algorithm in the clinical routine of lung cancer patientsFinnegan, Robert Neil, Orlandini, Lucia, Liao, Xiongfei, Yin, Jun, Lang, Jinyi, Dowling, Jason and Fontanarosa, Davide (2021). Feasibility of using a novel automatic cardiac segmentation algorithm in the clinical routine of lung cancer patients. PLoS One, 16 (1) e0245364, 1-14. doi: 10.1371/journal.pone.0245364 |
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2021 Conference Publication Automated Cardiac Evaluation From Chest CT: Potential Role in COVID-19Otton, J., Finnegan, R. and Dowling, J. (2021). Automated Cardiac Evaluation From Chest CT: Potential Role in COVID-19. 69th CSANZ Annual Scientific Meeting 45th Annual Scientific Meeting of the International Society for Heart Research ANZET 21, Online, 2021. Philadelphia, PA United States: Elsevier. doi: 10.1016/j.hlc.2021.06.186 |
