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2019 Journal Article Treatable traits can be identified in a severe asthma registry and predict future exacerbationsMcDonald, Vanessa M., Hiles, Sarah A., Godbout, Krystelle, Harvey, Erin S., Marks, Guy B., Hew, Mark, Peters, Matthew, Bardin, Philip G., Reynolds, Paul N., Upham, John W., Baraket, Melissa, Bhikoo, Zaheerodin, Bowden, Jeffrey, Brockway, Ben, Chung, Li Ping, Cochrane, Belinda, Foxley, Gloria, Garrett, Jeffrey, Jayaram, Lata, Jenkins, Christine, Katelaris, Constance, Katsoulotos, Gregory, Koh, Mariko S., Kritikos, Vicky, Lambert, Marina, Langton, David, Lara Rivero, Alexis, Middleton, Peter G., Nanguzgambo, Aldoph ... Gibson, Peter G. (2019). Treatable traits can be identified in a severe asthma registry and predict future exacerbations. Respirology, 24 (1), 37-47. doi: 10.1111/resp.13389 |
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2019 Book Chapter Spirometry for chronic obstructive pulmonary disease due to inhalation of smoke from indoor fires used for cooking and heatingShaw, Janet G., Vaughan, Annalicia, Smith, Emma, Fong, Cai, Stevanovic, Svetlana and Yang, Ian A. (2019). Spirometry for chronic obstructive pulmonary disease due to inhalation of smoke from indoor fires used for cooking and heating. Revolutionizing tropical medicine: point‐of‐care tests, new imaging technologies and digital health. (pp. 306-326) edited by Kerry Atkinson and David Mabey. Hoboken, NJ, United States: John Wiley & Sons. doi: 10.1002/9781119282686.ch20 |
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2018 Journal Article Polydisperse microparticle transport and deposition to the terminal bronchioles in a heterogeneous vasculature treeIslam, Mohammad S., Saha, Suvash C., Gemci, Tevfik, Yang, Ian A., Sauret, Emilie and Gu, Y. T. (2018). Polydisperse microparticle transport and deposition to the terminal bronchioles in a heterogeneous vasculature tree. Scientific Reports, 8 (1) 16387, 16387. doi: 10.1038/s41598-018-34804-x |
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2018 Journal Article How do new molecular tools apply to my clinical practice?Yang, Ian A. and Moodley, Yuben (2018). How do new molecular tools apply to my clinical practice?. Respirology, 23 (11), 991-992. doi: 10.1111/resp.13381 |
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2018 Journal Article Comprehensive molecular characterization of the hippo signaling pathway in cancerWang, Yumeng, Xu, Xiaoyan, Maglic, Dejan, Dill, Michael T., Mojumdar, Kamalika, Ng, Patrick Kwok-Shing, Jeong, Kang Jin, Tsang, Yiu Huen, Moreno, Daniela, Bhavana, Venkata Hemanjani, Peng, Xinxin, Ge, Zhongqi, Chen, Hu, Li, Jun, Chen, Zhongyuan, Zhang, Huiwen, Han, Leng, Du, Di, Creighton, Chad J., Mills, Gordon B., Camargo, Fernando, Liang, Han, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Comprehensive molecular characterization of the hippo signaling pathway in cancer. Cell Reports, 25 (5), 1304-1317.e5. doi: 10.1016/j.celrep.2018.10.001 |
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2018 Journal Article A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β SuperfamilyKorkut, Anil, Zaidi, Sobia, Kanchi, Rupa S, Rao, Shuyun, Gough, Nancy R, Schultz, Andre, Li, Xubin, Lorenzi, Philip L, Berger, Ashton C, Robertson, Gordon, Kwong, Lawrence N, Datto, Mike, Roszik, Jason, Ling, Shiyun, Ravikumar, Visweswaran, Manyam, Ganiraju, Rao, Arvind, Shelley, Simon, Liu, Yuexin, Ju, Zhenlin, Hansel, Donna, de Velasco, Guillermo, Pennathur, Arjun, Andersen, Jesper B, O'Rourke, Colm J, Ohshiro, Kazufumi, Jogunoori, Wilma, Nguyen, Bao-Ngoc, Li, Shulin ... Yang, Ian (2018). A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily. Cell systems, 7 (4), 422-437.e7. doi: 10.1016/j.cels.2018.08.010 |
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2018 Journal Article Subtype variation and actionability of telomere length abnormality in lung cancerGoh, Felicia, Yang, Ian A., Bowman, Rayleen V. and Fong, Kwun M. (2018). Subtype variation and actionability of telomere length abnormality in lung cancer. Translational Lung Cancer Research, 7 (S3), S251-S253. doi: 10.21037/tlcr.2018.09.03 |
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2018 Journal Article Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 PatientsKahles, Andre, Lehmann, Kjong-Van, Toussaint, Nora C., Huser, Matthias, Stark, Stefan G., Sachsenberg, Timo, Stegle, Oliver, Kohlbacher, Oliver, Sander, Chris, Ratsch, Gunnar, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients. Cancer Cell, 34 (2), 211-224.e6. doi: 10.1016/j.ccell.2018.07.001 |
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2018 Journal Article Erratum: Comprehensive Characterization of Cancer Driver Genes and MutationsBailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Kwok-Shing Ng, Patrick, Jeong, Kang Jin, Cao, Song, Wang, Zixing, Gao, Jianjiong, Gao, Qingsong, Wang, Fang, Liu, Eric Minwei, Mularoni, Loris, Rubio-Perez, Carlota, Nagarajan, Niranjan, Cortés-Ciriano, Isidro, Zhou, Daniel Cui, Liang, Wen-Wei, Hess, Julian M., Yellapantula, Venkata D., Tamborero, David, Gonzalez-Perez, Abel, Suphavilai, Chayaporn ... Ding, Li (2018). Erratum: Comprehensive Characterization of Cancer Driver Genes and Mutations. Cell, 174 (4), 1034-1035. doi: 10.1016/j.cell.2018.07.034 |
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2018 Journal Article Erratum: The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell CarcinomaRicketts, Christopher J., De Cubas, Aguirre A., Fan, Huihui, Smith, Christof C., Lang, Martin, Reznik, Ed, Bowlby, Reanne, Gibb, Ewan A., Akbani, Rehan, Beroukhim, Rameen, Bottaro, Donald P., Choueiri, Toni K., Gibbs, Richard A., Godwin, Andrew K., Haake, Scott, Hakimi, A. Ari, Henske, Elizabeth P., Hsieh, James J., Ho, Thai H., Kanchi, Rupa S., Krishnan, Bhavani, Kwiatkowski, David J., Lui, Wembin, Merino, Maria J., Mills, Gordon B., Myers, Jerome, Nickerson, Michael L., Reuter, Victor E., Schmidt, Laura S. ... Mariamidze, Armaz (2018). Erratum: The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma. Cell Reports, 23 (12), 3698. doi: 10.1016/j.celrep.2018.06.032 |
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2018 Journal Article Prostate-specific membrane antigen avidity on positron emission tomography scan in malignant pleural mesotheliomaEkanayake, Siyaguna K. D. M., Yang, Ian A., Godbolt, David B., Windsor, Morgan N., Henderson, Daniel, Kyle, Samuel, Sterling, David and Lee, Joseph C. (2018). Prostate-specific membrane antigen avidity on positron emission tomography scan in malignant pleural mesothelioma. ANZ Journal of Surgery, 89 (9), E406-E407. doi: 10.1111/ans.14694 |
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2018 Journal Article Diagnosis of the cause of chronic dyspnoea in primary and tertiary care: characterizing diagnostic confidenceHuang, Yao C., Ferry, Olivia R., McKenzie, Scott C., Bowman, Rayleen, Hamilton, Michael, Masel, Philip J., Fong, Kwun M. and Yang, Ian A. (2018). Diagnosis of the cause of chronic dyspnoea in primary and tertiary care: characterizing diagnostic confidence. Journal of Thoracic Disease, 10 (6), 3745-3756. doi: 10.21037/jtd.2018.05.183 |
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2018 Journal Article Working while unwell: Workplace impairment in people with severe asthmaHiles, S. A., Harvey, E. S., McDonald, V. M., Peters, M., Bardin, P., Reynolds, P. N., Upham, J. W., Baraket, M., Bhikoo, Z., Bowden, J., Brockway, B., Chung, L. P., Cochrane, B., Foxley, G., Garrett, J., Hew, M., Jayaram, L., Jenkins, C., Katelaris, C., Katsoulotos, G., Koh, M. S., Kritikos, V., Lambert, M., Langton, D., Rivero, A. L., Marks, G. B., Middleton, P. G., Nanguzgambo, A., Radhakrishna, N. ... Gibson, P. G. (2018). Working while unwell: Workplace impairment in people with severe asthma. Clinical and Experimental Allergy, 48 (6), 650-662. doi: 10.1111/cea.13153 |
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2018 Journal Article The Immune Landscape of CancerThorsson, Vesteinn, Gibbs, David L., Brown, Scott D., Wolf, Denise, Bortone, Dante S., Yang, Tai-Hsien Ou, Porta-Pardo, Eduard, Gao, Galen F., Plaisier, Christopher L., Eddy, James A., Ziv, Elad, Culhane, Aedin C., Paull, Evan O., Sivakumar, I. K. Ashok, Gentles, Andrew J., Malhotra, Raunaq, Farshidfar, Farshad, Colaprico, Antonio, Parker, Joel S., Mose, Lisle E., Nam Sy Vo,, Liu, Jianfang, Liu, Yuexin, Rader, Janet, Dhankani, Varsha, Reynolds, Sheila M., Bowlby, Reanne, Califano, Andrea, Cherniack, Andrew D. ... Yang, Ian (2018). The Immune Landscape of Cancer. Immunity, 48 (4), 812-830.e14. doi: 10.1016/j.immuni.2018.03.023 |
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2018 Journal Article Comparative Molecular Analysis of Gastrointestinal AdenocarcinomasLiu, Yang, Sethi, Nilay S., Hinoue, Toshinori, Schneider, Barbara G., Cherniack, Andrew D., Sanchez-Vega, Francisco, Seoane, Jose A., Farshidfar, Farshad, Bowlby, Reanne, Islam, Mirazul, Kim, Jaegil, Chatila, Walid, Akbani, Rehan, Kanchi, Rupa S., Rabkin, Charles S., Willis, Joseph E., Wang, Kenneth K., McCall, Shannon J., Mishra, Lopa, Ojesina, Akinyemi I., Bullman, Susan, Pedamallu, Chandra Sekhar, Lazar, Alexander J., Sakai, Ryo, Thorsson, Vesteinn, Bass, Adam J., Laird, Peter W., The Cancer Genome Atlas Research Network and Yang, Ian (2018). Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas. Cancer Cell, 33 (4), 721-735.e8. doi: 10.1016/j.ccell.2018.03.010 |
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2018 Journal Article Genomic and Functional Approaches to Understanding Cancer AneuploidyTaylor, Alison M., Shih, Juliann, Ha, Gavin, Gao, Galen F., Zhang, Xiaoyang, Berger, Ashton C., Schumacher, Steven E., Wang, Chen, Hu, Hai, Liu, Jianfang, Lazar, Alexander J., Cherniack, Andrew D., Beroukhim, Rameen, Meyerson, Matthew, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Genomic and Functional Approaches to Understanding Cancer Aneuploidy. Cancer Cell, 33 (4), 676-689.e3. doi: 10.1016/j.ccell.2018.03.007 |
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2018 Journal Article A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast CancersBerger, Ashton C., Korkut, Anil, Kanchi, Rupa S., Hegde, Apurva M., Lenoir, Walter, Liu, Wenbin, Liu, Yuexin, Fan, Huihui, Shen, Hui, Ravikumar, Visweswaran, Rao, Arvind, Schultz, Andre, Li, Xubin, Sumazin, Pavel, Williams, Cecilia, Mestdagh, Pieter, Gunaratne, Preethi H., Yau, Christina, Bowlby, Reanne, Robertson, A. Gordon, Tiezzi, Daniel G., Wang, Chen, Cherniack, Andrew D., Godwin, Andrew K., Kuderer, Nicole M., Rader, Janet S., Zuna, Rosemary E., Sood, Anil K., Lazar, Alexander J. ... Yang, Ian (2018). A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. Cancer Cell, 33 (4), 690-705.e9. doi: 10.1016/j.ccell.2018.03.014 |
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2018 Journal Article lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in CancerWang, Zehua, Yang, Bo, Zhang, Min, Guo, Weiwei, Wu, Zhiyuan, Wang, Yue, Jia, Lin, Li, Song, Xie, Wen, Yang, Da, The Cancer Genome Atlas Research Network and Yang, Ian (2018). lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer. Cancer Cell, 33 (4), 706-720.e9. doi: 10.1016/j.ccell.2018.03.006 |
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2018 Journal Article An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome AnalyticsLiu, Jianfang, Lichtenberg, Tara, Hoadley, Katherine A., Poisson, Laila M., Lazar, Alexander J., Cherniack, Andrew D., Kovatich, Albert J., Benz, Christopher C., Levine, Douglas A., Lee, Adrian V., Omberg, Larsson, Wolf, Denise M., Shriver, Craig D., Thorsson, Vesteinn, Hu, Hai, The Cancer Genome Atlas Research Network and Yang, Ian (2018). An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics. Cell, 173 (2) 416.e1, 400-416.e11. doi: 10.1016/j.cell.2018.02.052 |
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2018 Journal Article Machine Learning Identifies Stemness Features Associated with Oncogenic DedifferentiationMalta, Tathiane M., Sokolov, Artem, Gentles, Andrew J., Burzykowski, Tomasz, Poisson, Laila, Weinstein, John N., Kaminska, Bozena, Huelsken, Joerg, Omberg, Larsson, Gevaert, Olivier, Colaprico, Antonio, Czerwinska, Patrycja, Mazurek, Sylwia, Mishra, Lopa, Heyn, Holger, Krasnitz, Alex, Godwin, Andrew K., Lazar, Alexander J., Stuart, Joshua M., Hoadley, Katherine A., Laird, Peter W., Noushmehr, Houtan, Wiznerowicz, Maciej, The Cancer Genome Atlas Research Network and Yang, Ian (2018). Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation. Cell, 173 (2), 338-354.e15. doi: 10.1016/j.cell.2018.03.034 |
